Wall clock time and date at job start Wed Apr 1 2020 00:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00026 * 2 1 4 4 H 1.09002 * 110.64256 * 26.85724 * 3 2 1 5 5 C 1.54329 * 110.87157 * 263.61696 * 3 2 1 6 6 N 1.47023 * 107.26890 * 219.37252 * 5 3 2 7 7 C 1.36935 * 125.65157 * 178.89221 * 6 5 3 8 8 H 1.07998 * 120.00084 * 180.02562 * 7 6 5 9 9 C 1.38817 * 119.99719 * 0.02839 * 7 6 5 10 10 N 1.31617 * 119.99671 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00016 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47461 * 89.99501 * 11 9 7 13 13 H 1.48503 * 109.47127 * 209.99573 * 11 9 7 14 14 H 1.48500 * 109.47191 * 329.99721 * 11 9 7 15 15 C 1.47424 * 108.70328 * 358.93733 * 6 5 3 16 16 C 1.54911 * 104.83320 * 24.13364 * 15 6 5 17 17 H 1.09000 * 111.04229 * 81.07425 * 16 15 6 18 18 N 1.46504 * 111.00595 * 204.91524 * 16 15 6 19 19 C 1.34774 * 120.00121 * 267.19431 * 18 16 15 20 20 O 1.21276 * 119.99542 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00002 * 179.97438 * 19 18 16 22 22 C 1.53120 * 109.52389 * 60.12713 * 21 19 18 23 23 C 1.53166 * 109.20873 * 177.56295 * 22 21 19 24 24 N 1.46845 * 109.55463 * 300.85535 * 23 22 21 25 25 C 1.46900 * 111.00045 * 185.84196 * 24 23 22 26 26 C 1.52999 * 109.47534 * 50.78906 * 25 24 23 27 27 C 1.52999 * 109.47470 * 170.79391 * 25 24 23 28 28 C 1.46848 * 111.19518 * 61.74755 * 24 23 22 29 29 C 1.53037 * 109.52381 * 298.25146 * 28 24 23 30 30 H 1.09001 * 109.47565 * 59.99910 * 1 2 3 31 31 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46843 * 299.99562 * 1 2 3 33 33 H 1.09001 * 109.87909 * 338.78457 * 5 3 2 34 34 H 1.08996 * 109.88326 * 99.79858 * 5 3 2 35 35 H 0.97007 * 119.99501 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.37448 * 265.29196 * 15 6 5 37 37 H 1.09007 * 110.37037 * 142.96691 * 15 6 5 38 38 H 0.97000 * 119.99946 * 87.19222 * 18 16 15 39 39 H 1.09002 * 109.52254 * 299.99824 * 21 19 18 40 40 H 1.09004 * 109.49930 * 297.56498 * 22 21 19 41 41 H 1.08997 * 109.50353 * 57.67714 * 22 21 19 42 42 H 1.09003 * 109.44926 * 180.83262 * 23 22 21 43 43 H 1.09002 * 109.44150 * 60.87652 * 23 22 21 44 44 H 1.09002 * 109.47372 * 290.78954 * 25 24 23 45 45 H 1.08998 * 109.47220 * 300.00421 * 26 25 24 46 46 H 1.09001 * 109.46287 * 59.99921 * 26 25 24 47 47 H 1.08991 * 109.47452 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.46867 * 59.99560 * 27 25 24 49 49 H 1.08993 * 109.47452 * 179.97438 * 27 25 24 50 50 H 1.09001 * 109.46905 * 300.00418 * 27 25 24 51 51 H 1.09006 * 109.46097 * 178.23945 * 28 24 23 52 52 H 1.08996 * 109.46046 * 58.26729 * 28 24 23 53 53 H 1.08996 * 109.50616 * 299.24564 * 29 28 24 54 54 H 1.08992 * 109.50671 * 179.12200 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3803 1.7425 -1.4331 6 7 3.6668 2.4501 -1.3551 7 6 4.3523 2.9791 -2.4159 8 1 5.2941 3.4820 -2.2535 9 6 3.8366 2.8689 -3.7000 10 7 2.6890 2.2555 -3.8978 11 14 4.7713 3.5911 -5.1470 12 1 5.6968 2.5690 -5.6985 13 1 3.8098 4.0074 -6.1994 14 1 5.5506 4.7712 -4.6937 15 6 4.0970 2.4947 0.0543 16 6 3.3817 1.2957 0.7255 17 1 3.9169 0.3651 0.5368 18 7 3.2166 1.5209 2.1637 19 6 4.1467 1.0686 3.0278 20 8 5.1202 0.4749 2.6147 21 6 3.9771 1.3007 4.5071 22 6 2.6813 0.6387 4.9836 23 6 2.5467 0.8266 6.4978 24 7 3.7035 0.2241 7.1725 25 6 3.5408 0.2632 8.6320 26 6 2.1736 -0.3110 9.0084 27 6 4.6426 -0.5695 9.2905 28 6 4.9547 0.8759 6.7648 29 6 5.1619 0.6892 5.2601 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.4774 0.8665 -2.0744 34 1 1.6122 2.4075 -1.8278 35 1 2.3289 2.1782 -4.7953 36 1 3.7841 3.4306 0.5171 37 1 5.1786 2.3788 0.1246 38 1 2.4377 1.9954 2.4940 39 1 3.9332 2.3717 4.7051 40 1 1.8310 1.0998 4.4811 41 1 2.7092 -0.4256 4.7503 42 1 1.6326 0.3438 6.8436 43 1 2.5051 1.8910 6.7290 44 1 3.6093 1.2947 8.9777 45 1 1.3887 0.2822 8.5393 46 1 2.1052 -1.3425 8.6626 47 1 2.0531 -0.2825 10.0912 48 1 5.6167 -0.1603 9.0223 49 1 4.5222 -0.5401 10.3733 50 1 4.5742 -1.6009 8.9447 51 1 5.7896 0.4289 7.3046 52 1 4.9016 1.9400 6.9949 53 1 5.2288 -0.3743 5.0311 54 1 6.0826 1.1863 4.9551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082291222.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:46 Heat of formation + Delta-G solvation = -77.169754 kcal Electronic energy + Delta-G solvation = -30956.926076 eV Core-core repulsion = 26928.336148 eV Total energy + Delta-G solvation = -4028.589928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44032 -40.20220 -39.34027 -37.51773 -35.92199 -35.62475 -33.69791 -32.01211 -31.69567 -30.48565 -28.89410 -28.05522 -27.52653 -26.47755 -25.49032 -23.67530 -22.60907 -22.13925 -21.72003 -21.01062 -20.58054 -19.17416 -18.29737 -17.90405 -17.24861 -17.20260 -16.48920 -16.17128 -15.87157 -15.81023 -15.74813 -15.47449 -15.23759 -15.08550 -14.80834 -14.59725 -14.38355 -14.17857 -13.97493 -13.70083 -13.62043 -13.17965 -13.05608 -12.99699 -12.82327 -12.76276 -12.65073 -12.55999 -12.31393 -12.23004 -12.12236 -12.09608 -12.07026 -11.87938 -11.84974 -11.64055 -11.52208 -11.09736 -10.81156 -10.78225 -10.54611 -10.06223 -9.17003 -8.98202 -7.88693 -5.26997 1.44479 1.47440 1.55702 1.64580 2.06791 2.45823 2.77731 2.93552 3.30503 3.53000 3.56672 3.73066 3.84013 3.87763 3.92130 4.07546 4.08893 4.14693 4.27590 4.32679 4.38473 4.45659 4.46794 4.47995 4.51404 4.60103 4.65255 4.67661 4.77049 4.81074 4.82809 4.87921 4.91044 4.91750 4.96585 5.02249 5.03424 5.06659 5.21768 5.23621 5.32677 5.35461 5.37920 5.38155 5.46630 5.49785 5.64845 6.12291 6.23202 6.27237 6.32210 6.56734 7.03390 7.28510 7.68433 8.31011 9.20757 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.002317 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.744194 B =12081.189438 C =13051.575697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.077 3.923 4 H 0.098 0.902 5 C 0.175 3.825 6 N -0.622 5.622 7 C -0.247 4.247 8 H 0.083 0.917 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.131 3.869 16 C 0.150 3.850 17 H 0.070 0.930 18 N -0.700 5.700 19 C 0.516 3.484 20 O -0.585 6.585 21 C -0.096 4.096 22 C -0.102 4.102 23 C 0.055 3.945 24 N -0.549 5.549 25 C 0.075 3.925 26 C -0.147 4.147 27 C -0.144 4.144 28 C 0.062 3.938 29 C -0.093 4.093 30 H 0.034 0.966 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.249 0.751 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.415 0.585 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.053 0.947 51 H 0.083 0.917 52 H 0.043 0.957 53 H 0.054 0.946 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -1.354 28.593 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.116 0.884 5 C 0.049 3.951 6 N -0.350 5.350 7 C -0.375 4.375 8 H 0.101 0.899 9 C -0.257 4.257 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.005 3.995 16 C 0.043 3.957 17 H 0.089 0.911 18 N -0.352 5.352 19 C 0.304 3.696 20 O -0.465 6.465 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.072 4.072 24 N -0.275 5.275 25 C -0.033 4.033 26 C -0.205 4.205 27 C -0.201 4.201 28 C -0.066 4.066 29 C -0.132 4.132 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.253 0.747 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.101 0.899 52 H 0.061 0.939 53 H 0.073 0.927 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.901 -2.413 27.969 28.497 hybrid contribution 0.099 1.297 -1.271 1.818 sum -4.803 -1.116 26.698 27.150 Atomic orbital electron populations 1.22993 0.79286 1.03865 1.00814 1.87901 1.21814 1.27042 1.94917 1.23497 0.93670 0.85251 0.95796 0.88403 1.21280 0.87177 0.94597 0.92053 1.44533 1.22102 1.66269 1.02104 1.19446 1.02728 1.29429 0.85919 0.89937 1.25700 0.98483 1.01490 1.00028 1.70166 1.20584 1.48339 1.20660 0.85029 0.77282 0.78087 0.78613 1.21529 1.21624 1.19155 1.21931 0.97147 0.95827 0.84620 1.21798 0.95545 0.98153 0.80235 0.91142 1.45713 1.25880 1.58672 1.04904 1.21355 0.81486 0.76980 0.89784 1.90699 1.32046 1.43086 1.80652 1.21411 0.98750 1.03425 0.88108 1.21604 0.95161 1.00998 0.96206 1.22207 0.94358 0.97967 0.92664 1.61976 1.02384 1.56350 1.06800 1.21654 0.96882 0.98295 0.86448 1.21945 0.95274 1.01427 1.01823 1.21857 0.97753 1.00152 1.00367 1.22066 0.92955 0.97134 0.94446 1.21332 0.96595 1.01037 0.94186 0.94679 0.88251 0.91492 0.96676 0.95889 0.94191 0.93757 0.94883 0.74720 0.86415 0.88905 0.92328 0.88700 0.93586 0.93947 0.91779 0.92524 0.91160 0.92782 0.91125 0.92744 0.89864 0.93881 0.92737 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.91 16 2 O -0.40 -14.49 10.44 -148.98 -1.56 -16.05 16 3 C 0.08 2.88 3.09 31.78 0.10 2.98 16 4 H 0.10 2.96 7.68 -2.39 -0.02 2.94 16 5 C 0.17 8.83 5.15 86.73 0.45 9.28 16 6 N -0.62 -33.20 3.39 -691.97 -2.35 -35.55 16 7 C -0.25 -14.26 10.28 84.04 0.86 -13.40 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 9 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 10 N -0.95 -57.81 10.31 21.65 0.22 -57.58 16 11 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 C 0.13 5.71 6.93 86.86 0.60 6.31 16 16 C 0.15 5.67 3.15 46.38 0.15 5.82 16 17 H 0.07 3.22 7.54 -2.39 -0.02 3.20 16 18 N -0.70 -19.21 5.10 -435.96 -2.22 -21.43 16 19 C 0.52 15.01 7.16 87.66 0.63 15.64 16 20 O -0.59 -23.26 15.62 -3.02 -0.05 -23.31 16 21 C -0.10 -1.85 2.59 -11.46 -0.03 -1.88 16 22 C -0.10 -1.56 5.27 30.69 0.16 -1.40 16 23 C 0.06 0.69 5.01 86.37 0.43 1.13 16 24 N -0.55 -8.20 4.52 -870.85 -3.94 -12.14 16 25 C 0.07 0.89 2.69 44.91 0.12 1.01 16 26 C -0.15 -1.43 8.65 71.98 0.62 -0.81 16 27 C -0.14 -1.64 9.10 71.98 0.66 -0.98 16 28 C 0.06 0.97 5.29 86.33 0.46 1.42 16 29 C -0.09 -1.96 4.68 30.65 0.14 -1.82 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 33 H 0.01 0.89 7.30 -2.39 -0.02 0.87 16 34 H 0.02 1.25 7.51 -2.39 -0.02 1.24 16 35 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.42 8.02 8.04 -92.71 -0.75 7.28 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.05 7.65 -2.39 -0.02 1.03 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.01 5.83 -2.39 -0.01 1.00 16 43 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.04 0.48 8.13 -2.39 -0.02 0.46 16 45 H 0.06 0.55 6.19 -2.39 -0.01 0.53 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.05 0.63 6.40 -2.39 -0.02 0.62 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.08 1.25 6.18 -2.38 -0.01 1.24 16 52 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.05 1.43 8.04 -2.39 -0.02 1.41 16 54 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -76.07 412.21 -0.70 -76.78 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.12 Total: 18.66 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 7.04 Total: 21.97 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -8.29 Total: -126.71 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.60 Total: -39.35 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -76.07 -0.70 -76.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082291222.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.395 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds