Wall clock time and date at job start Tue Mar 31 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08998 * 109.46981 * 304.99585 * 3 2 1 5 5 C 1.52995 * 109.47305 * 65.00212 * 3 2 1 6 6 C 1.50700 * 109.46659 * 184.99763 * 3 2 1 7 7 O 1.21279 * 120.00306 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99728 * 180.02562 * 6 3 2 9 9 C 1.46505 * 119.99883 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.46903 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00382 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00149 * 180.02562 * 10 9 8 13 13 C 1.47431 * 125.64341 * 0.03974 * 12 10 9 14 14 C 1.54912 * 104.82949 * 204.09147 * 13 12 10 15 15 H 1.09000 * 111.00254 * 81.07017 * 14 13 12 16 16 C 1.53004 * 111.00695 * 204.91801 * 14 13 12 17 17 C 1.55156 * 101.58604 * 322.99608 * 14 13 12 18 18 H 1.09000 * 110.86864 * 277.06858 * 17 14 13 19 19 C 1.52992 * 110.72497 * 153.86469 * 17 14 13 20 20 C 1.52997 * 109.47482 * 180.02562 * 19 17 14 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 C 1.47023 * 125.65069 * 180.02562 * 12 10 9 31 31 H 1.09003 * 109.47159 * 299.99996 * 1 2 3 32 32 H 1.08996 * 109.47007 * 60.00133 * 1 2 3 33 33 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47291 * 239.99666 * 2 1 3 35 35 H 1.09004 * 109.46838 * 119.99651 * 2 1 3 36 36 H 1.08994 * 109.47232 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47158 * 300.00061 * 5 3 2 38 38 H 1.09001 * 109.47287 * 59.99355 * 5 3 2 39 39 H 0.97000 * 120.00339 * 359.97438 * 8 6 3 40 40 H 1.08998 * 109.46940 * 60.00189 * 9 8 6 41 41 H 1.08998 * 109.47129 * 299.99582 * 9 8 6 42 42 H 1.08992 * 110.37314 * 322.93281 * 13 12 10 43 43 H 1.09008 * 110.36286 * 85.14824 * 13 12 10 44 44 H 1.08997 * 109.47132 * 172.19914 * 16 14 13 45 45 H 1.09005 * 109.47105 * 292.20409 * 16 14 13 46 46 H 1.09001 * 109.46710 * 52.19730 * 16 14 13 47 47 H 1.09002 * 109.47103 * 60.02094 * 19 17 14 48 48 H 1.08998 * 109.46862 * 300.02906 * 19 17 14 49 49 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 50 50 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 51 51 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 52 52 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 53 53 H 1.08996 * 109.87920 * 59.56468 * 30 12 10 54 54 H 1.08996 * 109.88311 * 298.39002 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2045 8 7 4.2149 2.6119 -0.1447 9 6 5.6750 2.6136 -0.2656 10 6 6.1773 4.0344 -0.2655 11 8 5.3930 4.9549 -0.1730 12 7 7.4980 4.2823 -0.3681 13 6 8.5567 3.2632 -0.4872 14 6 9.8368 3.9577 0.0407 15 1 9.8696 3.9407 1.1301 16 6 11.0930 3.3174 -0.5535 17 6 9.6469 5.4042 -0.4874 18 1 9.9758 5.4856 -1.5234 19 6 10.3939 6.4055 0.3958 20 6 10.1871 7.8200 -0.1494 21 7 10.9020 8.7789 0.6968 22 6 10.8619 10.1154 0.4016 23 1 10.3030 10.4627 -0.4549 24 6 11.5396 11.0238 1.2029 25 7 12.2211 10.6005 2.2463 26 14 11.4844 12.8472 0.8006 27 1 10.3308 13.4727 1.4957 28 1 12.7435 13.4921 1.2523 29 1 11.3349 13.0262 -0.6659 30 6 8.1217 5.6137 -0.3802 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.9989 3.1541 1.3075 37 1 0.5489 2.1253 1.3969 38 1 2.0698 1.5875 2.1491 39 1 3.7326 3.4510 -0.0805 40 1 5.9629 2.1269 -1.1974 41 1 6.1099 2.0741 0.5757 42 1 8.3170 2.3937 0.1248 43 1 8.6848 2.9692 -1.5291 44 1 11.9668 3.9077 -0.2778 45 1 11.2021 2.3042 -0.1667 46 1 11.0048 3.2842 -1.6394 47 1 11.4576 6.1677 0.3951 48 1 10.0097 6.3488 1.4143 49 1 9.1234 8.0578 -0.1487 50 1 10.5714 7.8766 -1.1678 51 1 11.4042 8.4668 1.4657 52 1 12.6950 11.2352 2.8062 53 1 7.8840 6.1426 0.5427 54 1 7.7646 6.1825 -1.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105024862.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:05 Heat of formation + Delta-G solvation = -109.904979 kcal Electronic energy + Delta-G solvation = -29326.302911 eV Core-core repulsion = 25296.293477 eV Total energy + Delta-G solvation = -4030.009434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62340 -40.81201 -39.26588 -36.89364 -36.43929 -35.61458 -34.72611 -33.49025 -31.90555 -31.03636 -29.56352 -27.89395 -27.27407 -26.18513 -25.62621 -23.99735 -22.68803 -22.04072 -21.12950 -21.02394 -20.39942 -19.16847 -18.63908 -17.92837 -17.31725 -17.15588 -16.80924 -16.62304 -16.26896 -15.84577 -15.56373 -15.39980 -15.38877 -15.06035 -14.71434 -14.56524 -14.40122 -14.34547 -13.94514 -13.73294 -13.62412 -13.43718 -13.24219 -13.06025 -12.97682 -12.87700 -12.64125 -12.57534 -12.53521 -12.51471 -12.30248 -12.11597 -11.91559 -11.72810 -11.66636 -11.58949 -11.56454 -11.21121 -11.16851 -10.94033 -10.87804 -10.29978 -9.80228 -9.01716 -7.97227 -5.26246 1.35402 1.45800 1.47750 1.54793 1.56184 1.57767 2.26841 2.54458 3.21135 3.36399 3.48314 3.59298 3.64105 3.70454 3.85245 3.97225 4.11373 4.19543 4.22644 4.24109 4.31672 4.40281 4.42583 4.50542 4.52122 4.56535 4.62149 4.64206 4.71301 4.72427 4.78432 4.87747 4.90947 4.94947 5.01145 5.02064 5.08145 5.11526 5.16828 5.19539 5.24520 5.28808 5.34486 5.36909 5.42212 5.47968 5.50695 5.53996 6.25601 6.33170 6.39796 6.87149 7.10400 7.31593 8.08070 8.30991 9.26251 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.001780 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.226912 B =15725.374749 C =17051.041513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.145 4.145 6 C 0.518 3.482 7 O -0.576 6.576 8 N -0.718 5.718 9 C 0.111 3.889 10 C 0.519 3.481 11 O -0.577 6.577 12 N -0.611 5.611 13 C 0.097 3.903 14 C -0.094 4.094 15 H 0.083 0.917 16 C -0.137 4.137 17 C -0.080 4.080 18 H 0.099 0.901 19 C -0.100 4.100 20 C 0.149 3.851 21 N -0.748 5.748 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.269 1.269 30 C 0.113 3.887 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.415 0.585 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.013 0.987 50 H 0.022 0.978 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.050 0.950 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.851 -25.690 -6.765 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.127 4.127 4 H 0.134 0.866 5 C -0.203 4.203 6 C 0.306 3.694 7 O -0.455 6.455 8 N -0.373 5.373 9 C -0.016 4.016 10 C 0.308 3.692 11 O -0.458 6.458 12 N -0.343 5.343 13 C -0.024 4.024 14 C -0.113 4.113 15 H 0.102 0.898 16 C -0.195 4.195 17 C -0.099 4.099 18 H 0.117 0.883 19 C -0.138 4.138 20 C 0.022 3.978 21 N -0.391 5.391 22 C -0.381 4.381 23 H 0.091 0.909 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.802 3.198 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.194 1.194 30 C -0.010 4.010 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.253 0.747 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.031 0.969 50 H 0.040 0.960 51 H 0.206 0.794 52 H 0.061 0.939 53 H 0.069 0.931 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.956 -25.814 -6.891 32.191 hybrid contribution 0.313 1.793 0.399 1.863 sum -17.642 -24.021 -6.492 30.503 Atomic orbital electron populations 1.21824 0.93708 1.02459 1.02756 1.21320 0.96826 0.93701 1.02290 1.21410 0.89093 1.00016 1.02179 0.86576 1.21853 1.03667 1.00119 0.94616 1.21253 0.91321 0.82389 0.74398 1.90682 1.71247 1.32450 1.51166 1.45852 1.06481 1.10190 1.74749 1.21043 0.82506 0.92381 1.05690 1.20536 0.81096 0.91566 0.75953 1.90703 1.55402 1.47498 1.52164 1.48495 1.05500 1.09198 1.71143 1.22802 0.85326 0.91037 1.03259 1.22400 0.95111 0.92751 1.01019 0.89813 1.21687 0.95347 1.01045 1.01412 1.22187 0.91625 0.95119 1.00967 0.88277 1.21560 1.00898 0.92732 0.98640 1.20871 0.94214 0.89125 0.93551 1.42596 1.60595 1.03165 1.32708 1.19647 1.24939 0.84873 1.08671 0.90866 1.25574 1.00674 1.02462 0.98004 1.69809 1.38285 1.34608 1.19210 0.85140 0.76619 0.80073 0.77935 1.21508 1.21860 1.19416 1.22014 0.93436 0.84300 1.01261 0.91476 0.91906 0.92150 0.92449 0.92459 0.91856 0.89202 0.92745 0.74695 0.87027 0.87335 0.88103 0.88636 0.92550 0.90665 0.91316 0.90873 0.92628 0.96880 0.95998 0.79426 0.93938 0.93104 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 71.98 0.70 -0.55 16 2 C -0.10 -1.33 4.75 30.60 0.15 -1.18 16 3 C -0.11 -1.31 2.73 -11.54 -0.03 -1.34 16 4 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.15 -1.46 8.84 71.98 0.64 -0.82 16 6 C 0.52 9.56 7.15 87.66 0.63 10.19 16 7 O -0.58 -14.39 15.92 -3.03 -0.05 -14.44 16 8 N -0.72 -12.56 5.42 -466.78 -2.53 -15.09 16 9 C 0.11 1.86 5.16 85.63 0.44 2.31 16 10 C 0.52 11.67 7.92 87.66 0.69 12.37 16 11 O -0.58 -17.41 15.99 -3.03 -0.05 -17.46 16 12 N -0.61 -12.49 3.33 -811.78 -2.70 -15.19 16 13 C 0.10 1.26 6.16 86.86 0.53 1.80 16 14 C -0.09 -1.45 3.09 -9.40 -0.03 -1.48 16 15 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 16 C -0.14 -1.67 9.31 71.98 0.67 -1.00 16 17 C -0.08 -1.71 2.45 -9.61 -0.02 -1.74 16 18 H 0.10 1.96 8.04 -2.39 -0.02 1.94 16 19 C -0.10 -2.96 4.71 30.59 0.14 -2.81 16 20 C 0.15 5.89 6.11 86.38 0.53 6.41 16 21 N -0.75 -38.72 5.60 -343.45 -1.92 -40.65 16 22 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 23 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 25 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 26 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 30 C 0.11 2.82 5.61 86.73 0.49 3.30 16 31 H 0.07 0.45 6.57 -2.39 -0.02 0.43 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.88 7.95 -2.39 -0.02 0.87 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.06 0.64 7.56 -2.39 -0.02 0.62 16 37 H 0.09 0.60 6.57 -2.39 -0.02 0.58 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.41 7.13 6.85 -92.71 -0.64 6.49 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 1.63 7.85 -2.39 -0.02 1.61 16 42 H 0.10 0.91 7.48 -2.39 -0.02 0.90 16 43 H 0.10 0.92 7.99 -2.38 -0.02 0.91 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.05 1.74 8.06 -2.39 -0.02 1.73 16 49 H 0.01 0.54 7.49 -2.39 -0.02 0.52 16 50 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.37 20.40 7.67 -92.71 -0.71 19.68 16 52 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 53 H 0.05 1.54 7.76 -2.39 -0.02 1.52 16 54 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -75.46 429.00 1.42 -74.05 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.47 Total: 31.46 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.83 Total: 8.13 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -6.87 Total: -130.48 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.10 Total: -31.90 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -75.46 1.42 -74.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105024862.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.860 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds