Wall clock time and date at job start Wed Apr 1 2020 00:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47407 * 2 1 4 4 N 1.46902 * 109.47273 * 120.00416 * 2 1 3 5 5 C 1.48561 * 110.99647 * 302.96728 * 4 2 1 6 6 C 1.54388 * 104.59189 * 200.95919 * 5 4 2 7 7 C 1.54266 * 105.05905 * 23.85407 * 6 5 4 8 8 C 1.48563 * 110.99993 * 187.55148 * 4 2 1 9 9 H 1.08998 * 110.41005 * 40.25723 * 8 4 2 10 10 C 1.50709 * 110.40911 * 277.81960 * 8 4 2 11 11 O 1.21275 * 119.99831 * 3.36887 * 10 8 4 12 12 N 1.34780 * 119.99543 * 183.37459 * 10 8 4 13 13 C 1.46497 * 119.99381 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46869 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.51514 * 59.89790 * 14 13 12 16 16 C 1.53296 * 109.51065 * 180.02562 * 14 13 12 17 17 N 1.47158 * 108.38438 * 172.22533 * 16 14 13 18 18 C 1.36935 * 120.98373 * 129.44293 * 17 16 14 19 19 H 1.07998 * 119.99958 * 208.35452 * 18 17 16 20 20 C 1.38812 * 120.00083 * 28.34939 * 18 17 16 21 21 N 1.31620 * 119.99877 * 14.86240 * 20 18 17 22 22 Si 1.86800 * 120.00144 * 194.85947 * 20 18 17 23 23 H 1.48496 * 109.47129 * 60.00020 * 22 20 18 24 24 H 1.48501 * 109.46894 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46926 * 300.00103 * 22 20 18 26 26 C 1.47157 * 118.03322 * 309.46586 * 17 16 14 27 27 C 1.53295 * 108.38738 * 50.53484 * 26 17 16 28 28 O 1.42962 * 109.51085 * 299.74736 * 14 13 12 29 29 H 1.09005 * 109.46502 * 298.51219 * 1 2 3 30 30 H 1.09003 * 109.46947 * 58.50744 * 1 2 3 31 31 H 1.08995 * 109.47183 * 178.51048 * 1 2 3 32 32 H 1.09000 * 109.47022 * 240.00342 * 2 1 3 33 33 H 1.09000 * 109.46795 * 66.58082 * 3 2 1 34 34 H 1.08998 * 109.47254 * 186.57486 * 3 2 1 35 35 H 1.08997 * 109.47392 * 306.58211 * 3 2 1 36 36 H 1.08991 * 110.41060 * 82.18301 * 5 4 2 37 37 H 1.08995 * 110.41588 * 319.73653 * 5 4 2 38 38 H 1.08997 * 110.32141 * 264.96293 * 6 5 4 39 39 H 1.08996 * 110.32269 * 142.74757 * 6 5 4 40 40 H 1.09003 * 110.32134 * 118.89586 * 7 6 5 41 41 H 1.08998 * 110.32351 * 241.10390 * 7 6 5 42 42 H 0.96993 * 120.00150 * 0.02562 * 12 10 8 43 43 H 1.08997 * 109.47373 * 300.00163 * 13 12 10 44 44 H 1.09001 * 109.47456 * 60.00109 * 13 12 10 45 45 H 1.09003 * 109.46624 * 59.99709 * 15 14 13 46 46 H 1.08992 * 109.47304 * 179.97438 * 15 14 13 47 47 H 1.09002 * 109.47093 * 300.00351 * 15 14 13 48 48 H 1.08997 * 109.68390 * 291.94401 * 16 14 13 49 49 H 1.08995 * 109.68355 * 52.46883 * 16 14 13 50 50 H 0.96994 * 120.00035 * 180.02562 * 21 20 18 51 51 H 1.09000 * 109.67715 * 170.25515 * 26 17 16 52 52 H 1.08998 * 109.68239 * 290.80711 * 26 17 16 53 53 H 1.08999 * 109.51536 * 67.61807 * 27 26 17 54 54 H 1.08994 * 109.51309 * 187.77630 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4856 -0.0617 2.4338 6 6 2.4592 -0.5019 3.5482 7 6 3.7801 -0.8274 2.8208 8 6 3.4935 -0.5565 1.3283 9 1 3.8073 0.4516 1.0577 10 6 4.1928 -1.5753 0.4655 11 8 3.5458 -2.3112 -0.2491 12 7 5.5372 -1.6684 0.4881 13 6 6.2168 -2.6591 -0.3503 14 6 7.7285 -2.5564 -0.1372 15 6 8.0563 -2.8198 1.3339 16 6 8.4407 -3.5922 -1.0145 17 7 9.8900 -3.3497 -0.9351 18 6 10.7606 -4.3679 -0.6514 19 1 11.6968 -4.1557 -0.1564 20 6 10.4398 -5.6727 -0.9998 21 7 9.4607 -5.9056 -1.8480 22 14 11.3978 -7.0981 -0.2649 23 1 11.2598 -7.0773 1.2135 24 1 10.8639 -8.3786 -0.7944 25 1 12.8316 -6.9714 -0.6300 26 6 10.3760 -1.9806 -1.1693 27 6 9.5695 -1.0233 -0.2844 28 8 8.1739 -1.2471 -0.4996 29 1 -0.3632 0.4906 0.9031 30 1 -0.3633 0.5369 -0.8763 31 1 -0.3633 -1.0273 -0.0267 32 1 1.8933 -0.5138 -0.8900 33 1 1.7761 1.9212 0.9430 34 1 3.1237 1.4447 -0.1177 35 1 1.5838 1.9892 -0.8252 36 1 0.4797 -0.4259 2.6421 37 1 1.4852 1.0239 2.3363 38 1 2.0781 -1.3881 4.0555 39 1 2.6096 0.3085 4.2614 40 1 4.5788 -0.1768 3.1771 41 1 4.0473 -1.8734 2.9713 42 1 6.0545 -1.0801 1.0599 43 1 5.8790 -3.6588 -0.0777 44 1 5.9836 -2.4698 -1.3981 45 1 7.7181 -3.8190 1.6081 46 1 9.1333 -2.7469 1.4848 47 1 7.5510 -2.0815 1.9566 48 1 8.2162 -4.5958 -0.6533 49 1 8.1070 -3.4904 -2.0471 50 1 9.2363 -6.8174 -2.0912 51 1 11.4330 -1.9171 -0.9105 52 1 10.2376 -1.7161 -2.2176 53 1 9.8104 -1.2053 0.7629 54 1 9.8170 0.0064 -0.5421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107941714.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:36 Heat of formation + Delta-G solvation = -66.511559 kcal Electronic energy + Delta-G solvation = -31794.313248 eV Core-core repulsion = 27766.185494 eV Total energy + Delta-G solvation = -4028.127754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53399 -40.65564 -39.25505 -36.50899 -35.90594 -35.31780 -33.26130 -33.15310 -30.71094 -29.94442 -29.56116 -28.15982 -27.97802 -27.07861 -24.99650 -24.23729 -22.98820 -22.47745 -21.16992 -20.50394 -20.10267 -18.93264 -18.33817 -17.54320 -17.43474 -16.85588 -16.76032 -16.18001 -15.99370 -15.84340 -15.57656 -15.39215 -15.28341 -14.92210 -14.84763 -14.61596 -14.49428 -14.12081 -13.91689 -13.63319 -13.42922 -13.33684 -13.17604 -12.91946 -12.75406 -12.71551 -12.52946 -12.47191 -12.44540 -12.38846 -12.18807 -12.16188 -12.01022 -11.96003 -11.85503 -11.70227 -11.30838 -11.13755 -10.81734 -10.66867 -10.50494 -10.07567 -9.30022 -8.69510 -7.89631 -5.39301 1.46063 1.47942 1.54961 1.68879 2.06233 2.47886 2.78887 3.08738 3.25828 3.50690 3.60513 3.61147 3.88781 3.94762 4.02053 4.08430 4.11149 4.13468 4.14900 4.28864 4.41810 4.43250 4.47059 4.57473 4.59103 4.63519 4.67388 4.71396 4.72539 4.78326 4.80044 4.88524 4.93739 4.97572 5.03083 5.05029 5.12681 5.13092 5.13337 5.20825 5.21890 5.34495 5.36058 5.39260 5.42695 5.53382 5.61025 5.87373 6.13689 6.30174 6.37471 6.63123 7.06997 7.32373 7.75764 8.30832 9.15746 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002612 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.925906 B =10717.689147 C =10942.713299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.061 3.939 3 C -0.184 4.184 4 N -0.505 5.505 5 C 0.026 3.974 6 C -0.118 4.118 7 C -0.114 4.114 8 C 0.042 3.958 9 H 0.102 0.898 10 C 0.515 3.485 11 O -0.573 6.573 12 N -0.706 5.706 13 C 0.153 3.847 14 C 0.096 3.904 15 C -0.151 4.151 16 C 0.170 3.830 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.101 3.899 27 C 0.053 3.947 28 O -0.385 6.385 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.413 0.587 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.063 0.937 49 H -0.010 1.010 50 H 0.250 0.750 51 H 0.072 0.928 52 H 0.010 0.990 53 H 0.062 0.938 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 18.263 12.829 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C -0.242 4.242 4 N -0.230 5.230 5 C -0.101 4.101 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.070 4.070 9 H 0.119 0.881 10 C 0.302 3.698 11 O -0.452 6.452 12 N -0.359 5.359 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.209 4.209 16 C 0.043 3.957 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.200 1.200 26 C -0.024 4.024 27 C -0.024 4.024 28 O -0.304 6.304 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.250 0.750 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.008 0.992 50 H 0.059 0.941 51 H 0.091 0.909 52 H 0.028 0.972 53 H 0.080 0.920 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.232 17.158 12.113 25.371 hybrid contribution 1.274 -0.679 -0.417 1.503 sum -12.958 16.479 11.695 24.005 Atomic orbital electron populations 1.21779 0.92845 1.01891 1.02820 1.21816 0.96924 0.92857 0.93161 1.22467 1.01178 0.96890 1.03695 1.65293 1.02954 1.51914 1.02796 1.23290 0.99674 0.98387 0.88700 1.22303 0.93438 1.02521 0.97332 1.22343 0.99882 1.02781 0.90275 1.22744 0.90493 0.97277 0.96462 0.88058 1.21035 0.81851 0.84614 0.82324 1.90673 1.66229 1.45406 1.42850 1.45766 1.06236 1.38436 1.45447 1.20951 0.89240 0.92401 0.94673 1.22161 0.91968 0.84669 0.95749 1.22093 1.02665 1.01859 0.94248 1.21010 0.83500 0.96886 0.94311 1.44217 1.01689 1.04737 1.82423 1.19463 1.01597 0.86901 1.31090 0.90868 1.25875 0.99951 1.00810 0.97864 1.70168 1.33736 1.19636 1.34756 0.85337 0.78374 0.78324 0.78399 1.19954 1.22429 1.20022 1.21832 0.98341 0.85548 0.96696 1.23115 0.80532 0.99625 0.99162 1.87823 1.25057 1.30685 1.86858 0.91032 0.91253 0.93376 0.92790 0.90382 0.92992 0.90979 0.89544 0.91458 0.91184 0.88480 0.87759 0.92022 0.74977 0.91499 0.93316 0.92808 0.91949 0.90186 0.91852 0.99240 0.94094 0.90929 0.97158 0.91953 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.01 71.98 0.65 -1.65 16 2 C 0.06 1.29 2.94 44.92 0.13 1.42 16 3 C -0.18 -2.84 8.33 71.98 0.60 -2.24 16 4 N -0.51 -11.03 4.74 -835.99 -3.96 -14.99 16 5 C 0.03 0.38 5.07 86.45 0.44 0.82 16 6 C -0.12 -1.45 7.00 31.49 0.22 -1.23 16 7 C -0.11 -1.76 6.47 31.49 0.20 -1.56 16 8 C 0.04 0.87 2.47 44.32 0.11 0.98 16 9 H 0.10 1.77 5.47 -2.39 -0.01 1.76 16 10 C 0.51 15.47 6.98 87.66 0.61 16.08 16 11 O -0.57 -22.87 15.67 -3.01 -0.05 -22.92 16 12 N -0.71 -19.88 5.09 -463.06 -2.36 -22.23 16 13 C 0.15 5.46 4.82 86.38 0.42 5.88 16 14 C 0.10 3.54 0.76 -10.69 -0.01 3.53 16 15 C -0.15 -4.88 7.92 71.98 0.57 -4.31 16 16 C 0.17 8.26 4.09 86.35 0.35 8.61 16 17 N -0.61 -29.87 2.56 -697.53 -1.79 -31.65 16 18 C -0.26 -13.92 9.64 84.03 0.81 -13.12 16 19 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 20 C -0.05 -2.73 4.98 84.86 0.42 -2.31 16 21 N -0.94 -55.82 11.17 21.65 0.24 -55.58 16 22 Si 0.97 44.32 29.58 68.60 2.03 46.35 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.10 4.06 6.73 86.35 0.58 4.64 16 27 C 0.05 1.65 6.60 72.08 0.48 2.13 16 28 O -0.38 -13.37 9.98 -148.98 -1.49 -14.85 16 29 H 0.07 0.94 6.80 -2.38 -0.02 0.92 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.54 7.43 -2.39 -0.02 1.52 16 33 H 0.08 0.92 5.91 -2.39 -0.01 0.91 16 34 H 0.05 0.87 6.31 -2.39 -0.02 0.86 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.19 7.63 -2.39 -0.02 1.17 16 37 H 0.07 0.74 5.73 -2.39 -0.01 0.72 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.17 7.85 -2.39 -0.02 1.15 16 42 H 0.41 9.31 7.18 -92.71 -0.67 8.65 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 2.17 6.12 -2.39 -0.01 2.16 16 47 H 0.08 1.97 6.86 -2.39 -0.02 1.95 16 48 H 0.06 3.46 6.23 -2.39 -0.01 3.44 16 49 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 50 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 51 H 0.07 2.70 7.96 -2.39 -0.02 2.69 16 52 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 53 H 0.06 1.82 6.25 -2.39 -0.01 1.80 16 54 H 0.12 2.84 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -71.88 401.54 -0.56 -72.45 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.22 Total: 25.76 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 6.59 Total: 17.67 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.87 Total: -124.46 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.53 Total: -37.77 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.88 -0.56 -72.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107941714.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.936 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds