Wall clock time and date at job start Wed Apr 1 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47053 * 2 1 4 4 N 1.46901 * 109.46818 * 175.56946 * 3 2 1 5 5 C 1.47448 * 111.00149 * 55.51924 * 4 3 2 6 6 C 1.54319 * 107.23243 * 123.25555 * 5 4 3 7 7 C 1.55138 * 103.01797 * 22.28364 * 6 5 4 8 8 C 1.47842 * 110.99827 * 176.35943 * 4 3 2 9 9 H 1.09000 * 110.37591 * 332.57944 * 8 4 3 10 10 C 1.50705 * 110.37334 * 94.80571 * 8 4 3 11 11 O 1.21284 * 119.99908 * 0.02562 * 10 8 4 12 12 N 1.34775 * 120.00081 * 179.97438 * 10 8 4 13 13 C 1.46499 * 119.99935 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47186 * 180.02562 * 13 12 10 15 15 C 1.52991 * 109.51561 * 59.99775 * 14 13 12 16 16 C 1.53294 * 109.51287 * 180.10219 * 14 13 12 17 17 N 1.47271 * 108.32726 * 172.23033 * 16 14 13 18 18 C 1.36928 * 120.95753 * 129.46621 * 17 16 14 19 19 H 1.08003 * 120.00127 * 205.87180 * 18 17 16 20 20 C 1.38819 * 120.00495 * 25.87221 * 18 17 16 21 21 N 1.31623 * 119.99130 * 16.99800 * 20 18 17 22 22 Si 1.86796 * 120.00400 * 196.99692 * 20 18 17 23 23 H 1.48503 * 109.46812 * 60.00419 * 22 20 18 24 24 H 1.48499 * 109.46904 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47128 * 300.00049 * 22 20 18 26 26 C 1.47148 * 118.05952 * 309.49354 * 17 16 14 27 27 C 1.53296 * 108.38861 * 50.53014 * 26 17 16 28 28 O 1.42963 * 109.21974 * 307.69964 * 27 26 17 29 29 H 1.08994 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46952 * 300.00137 * 1 2 3 31 31 H 1.08998 * 109.46704 * 59.99878 * 1 2 3 32 32 H 1.09003 * 109.46952 * 239.99863 * 2 1 3 33 33 H 1.09001 * 109.46818 * 119.99599 * 2 1 3 34 34 H 1.08998 * 109.47385 * 55.56990 * 3 2 1 35 35 H 1.08998 * 109.46864 * 295.56528 * 3 2 1 36 36 H 1.08995 * 109.88714 * 242.66320 * 5 4 3 37 37 H 1.09006 * 109.88404 * 3.84958 * 5 4 3 38 38 H 1.09002 * 110.70120 * 140.66949 * 6 5 4 39 39 H 1.08998 * 110.70285 * 263.72359 * 6 5 4 40 40 H 1.09005 * 110.98948 * 206.25011 * 7 6 5 41 41 H 1.09005 * 110.99133 * 82.44164 * 7 6 5 42 42 H 0.96996 * 119.99930 * 0.02562 * 12 10 8 43 43 H 1.08998 * 109.47290 * 59.99936 * 13 12 10 44 44 H 1.08999 * 109.47217 * 300.00062 * 13 12 10 45 45 H 1.09002 * 109.47398 * 59.99881 * 15 14 13 46 46 H 1.08997 * 109.47505 * 300.00443 * 15 14 13 47 47 H 1.09003 * 109.47616 * 180.02562 * 15 14 13 48 48 H 1.08999 * 109.68422 * 291.99396 * 16 14 13 49 49 H 1.08999 * 109.68322 * 52.55099 * 16 14 13 50 50 H 0.97004 * 119.99592 * 179.97438 * 21 20 18 51 51 H 1.09004 * 109.67857 * 290.81037 * 26 17 16 52 52 H 1.09000 * 109.68132 * 170.25433 * 26 17 16 53 53 H 1.08994 * 109.51557 * 187.77928 * 27 26 17 54 54 H 1.08999 * 109.55197 * 67.64731 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5052 1.4439 0.1070 5 6 4.1141 0.6361 -0.9658 6 6 5.0900 1.5541 -1.7314 7 6 5.4035 2.6691 -0.6993 8 6 4.0413 2.8191 0.0227 9 1 3.3704 3.4531 -0.5569 10 6 4.2392 3.3905 1.4031 11 8 3.9643 2.7259 2.3797 12 7 4.7228 4.6396 1.5524 13 6 4.9158 5.1949 2.8943 14 6 5.4702 6.6165 2.7831 15 6 4.4833 7.4908 2.0071 16 6 5.6749 7.1975 4.1868 17 7 6.3800 8.4840 4.0573 18 6 5.9081 9.6111 4.6752 19 1 6.1437 10.5858 4.2739 20 6 5.1268 9.5012 5.8174 21 7 5.1105 8.3744 6.4974 22 14 4.0989 10.9523 6.3892 23 1 3.1300 11.3220 5.3261 24 1 3.3620 10.5810 7.6238 25 1 4.9878 12.1076 6.6724 26 6 7.6057 8.5227 3.2441 27 6 7.3061 7.8765 1.8867 28 8 6.7243 6.5876 2.0972 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6134 1.9788 0.8476 35 1 1.7430 1.9329 -0.9270 36 1 4.6571 -0.2046 -0.5341 37 1 3.3396 0.2726 -1.6413 38 1 5.9968 1.0127 -2.0014 39 1 4.6124 1.9696 -2.6187 40 1 5.6846 3.5961 -1.1992 41 1 6.1808 2.3508 -0.0046 42 1 4.9430 5.1710 0.7714 43 1 5.6191 4.5724 3.4474 44 1 3.9606 5.2179 3.4188 45 1 3.5280 7.5138 2.5315 46 1 4.3396 7.0781 1.0085 47 1 4.8792 8.5033 1.9279 48 1 4.7075 7.3542 4.6640 49 1 6.2729 6.5100 4.7851 50 1 4.5649 8.2977 7.2958 51 1 8.3979 7.9686 3.7476 52 1 7.9165 9.5571 3.0975 53 1 8.2321 7.7699 1.3218 54 1 6.6099 8.5036 1.3298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107982913.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:55 Heat of formation + Delta-G solvation = -73.980645 kcal Electronic energy + Delta-G solvation = -31346.926908 eV Core-core repulsion = 27318.475270 eV Total energy + Delta-G solvation = -4028.451638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37472 -40.56390 -39.11466 -36.49984 -35.87621 -35.42247 -33.27253 -33.14715 -31.63952 -30.54436 -29.55400 -28.02892 -27.12620 -26.38184 -24.98666 -23.74632 -22.98865 -22.64517 -21.13329 -20.86229 -20.23094 -18.93821 -18.45278 -17.58078 -17.28228 -16.84172 -16.67468 -16.44131 -16.11382 -15.69522 -15.62172 -15.55527 -15.22338 -15.19594 -14.67037 -14.60747 -14.28982 -14.03006 -13.91142 -13.71368 -13.59610 -13.39611 -13.18847 -12.92260 -12.76772 -12.74568 -12.71099 -12.51795 -12.43858 -12.21871 -12.18385 -12.06974 -11.95235 -11.84121 -11.76357 -11.64941 -11.51812 -11.13908 -10.81910 -10.67973 -10.48667 -10.05772 -9.22702 -8.72110 -7.89350 -5.35876 1.46100 1.48105 1.55124 1.70834 2.05160 2.48300 2.79500 3.04229 3.25458 3.50646 3.56121 3.65834 3.90897 3.98384 4.03073 4.04807 4.11399 4.12761 4.15439 4.22313 4.43545 4.45260 4.47567 4.52856 4.54923 4.59748 4.65772 4.72172 4.77537 4.79840 4.81927 4.86446 4.94202 4.97665 4.98995 5.05620 5.09864 5.13371 5.17541 5.21645 5.28508 5.34652 5.36359 5.37736 5.43799 5.53904 5.61461 5.93637 6.14715 6.29269 6.38254 6.66021 7.06692 7.35383 7.76558 8.30493 9.16148 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.002604 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.108025 B =10748.965244 C =11899.002373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.056 3.944 4 N -0.536 5.536 5 C 0.039 3.961 6 C -0.131 4.131 7 C -0.115 4.115 8 C 0.060 3.940 9 H 0.100 0.900 10 C 0.513 3.487 11 O -0.572 6.572 12 N -0.706 5.706 13 C 0.153 3.847 14 C 0.097 3.903 15 C -0.152 4.152 16 C 0.167 3.833 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.075 0.925 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.101 3.899 27 C 0.053 3.947 28 O -0.383 6.383 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.413 0.587 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.066 0.934 49 H -0.010 1.010 50 H 0.250 0.750 51 H 0.011 0.989 52 H 0.072 0.928 53 H 0.119 0.881 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -12.028 -23.032 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.072 4.072 4 N -0.261 5.261 5 C -0.088 4.088 6 C -0.169 4.169 7 C -0.153 4.153 8 C -0.052 4.052 9 H 0.118 0.882 10 C 0.299 3.701 11 O -0.451 6.451 12 N -0.359 5.359 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.209 4.209 16 C 0.040 3.960 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.092 0.908 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.024 4.024 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.250 0.750 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.008 0.992 50 H 0.059 0.941 51 H 0.029 0.971 52 H 0.091 0.909 53 H 0.137 0.863 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.598 -12.901 -21.758 25.550 hybrid contribution -0.592 1.509 0.697 1.765 sum -4.190 -11.392 -21.061 24.308 Atomic orbital electron populations 1.21715 0.94609 1.02382 1.01896 1.21565 0.96377 0.95229 1.02377 1.22296 0.86697 0.98273 0.99938 1.63002 1.06414 1.09137 1.47547 1.22953 0.97717 0.96684 0.91422 1.22785 1.00387 0.96045 0.97714 1.22702 0.93652 1.01398 0.97597 1.22495 0.99527 0.91679 0.91485 0.88235 1.21134 0.76108 0.80699 0.92133 1.90676 1.51613 1.60226 1.42539 1.45767 1.65884 1.15498 1.08773 1.20942 0.99489 0.91850 0.84981 1.22139 0.84766 0.93744 0.93805 1.22098 0.98386 1.00405 1.00023 1.21081 0.97277 0.85858 0.91771 1.44277 1.24907 1.06311 1.57633 1.19483 1.27909 0.86828 1.04647 0.90770 1.25803 1.03348 0.99546 0.95978 1.70190 1.42575 1.27908 1.17665 0.85345 0.78927 0.79219 0.77010 1.20023 1.22458 1.20065 1.21830 0.88344 0.99828 0.92413 1.23110 0.98841 0.84485 0.95992 1.87827 1.35494 1.29635 1.77320 0.91586 0.93574 0.91788 0.90423 0.92914 0.93193 0.93263 0.91175 0.90489 0.89113 0.89264 0.87605 0.91910 0.74975 0.93331 0.91543 0.92864 0.90247 0.91936 0.91539 0.99217 0.94118 0.97103 0.90932 0.86349 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.97 5.63 30.60 0.17 -1.80 16 3 C 0.06 1.10 4.80 86.30 0.41 1.52 16 4 N -0.54 -11.85 4.45 -864.97 -3.85 -15.70 16 5 C 0.04 0.60 6.18 86.65 0.54 1.14 16 6 C -0.13 -1.49 6.94 31.77 0.22 -1.27 16 7 C -0.12 -1.81 6.47 31.98 0.21 -1.60 16 8 C 0.06 1.25 2.84 44.64 0.13 1.37 16 9 H 0.10 1.64 7.72 -2.39 -0.02 1.62 16 10 C 0.51 15.42 7.19 87.66 0.63 16.05 16 11 O -0.57 -23.11 16.49 -3.04 -0.05 -23.16 16 12 N -0.71 -19.80 5.13 -463.07 -2.38 -22.17 16 13 C 0.15 5.46 4.82 86.38 0.42 5.88 16 14 C 0.10 3.57 0.76 -10.70 -0.01 3.56 16 15 C -0.15 -4.90 7.92 71.98 0.57 -4.33 16 16 C 0.17 8.12 4.12 86.33 0.36 8.48 16 17 N -0.61 -29.85 2.57 -697.24 -1.79 -31.64 16 18 C -0.26 -13.82 9.65 84.04 0.81 -13.01 16 19 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 20 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 21 N -0.94 -55.78 11.12 21.65 0.24 -55.53 16 22 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.10 4.04 6.74 86.36 0.58 4.62 16 27 C 0.05 1.65 6.60 72.08 0.48 2.12 16 28 O -0.38 -13.22 9.98 -148.98 -1.49 -14.71 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.03 6.40 -2.39 -0.02 1.02 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 0.78 8.00 -2.39 -0.02 0.76 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 0.91 6.04 -2.38 -0.01 0.90 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 1.26 8.05 -2.38 -0.02 1.24 16 42 H 0.41 9.19 7.20 -92.71 -0.67 8.52 16 43 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 1.96 6.87 -2.39 -0.02 1.94 16 47 H 0.06 2.18 6.11 -2.39 -0.01 2.17 16 48 H 0.07 3.63 6.11 -2.39 -0.01 3.61 16 49 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 50 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 51 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 53 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 54 H 0.06 1.79 6.25 -2.39 -0.01 1.78 16 Total: -1.00 -72.19 411.17 -0.44 -72.62 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.20 Total: 25.03 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 6.64 Total: 18.93 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -7.77 Total: -125.05 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.54 Total: -37.87 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.19 -0.44 -72.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982913.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.358 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds