Wall clock time and date at job start Tue Mar 31 2020 22:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47056 * 2 1 4 4 H 1.09005 * 109.47394 * 174.95677 * 3 2 1 5 5 C 1.53004 * 109.47355 * 294.95341 * 3 2 1 6 6 C 1.50693 * 109.47108 * 293.54907 * 5 3 2 7 7 O 1.21281 * 120.00462 * 353.74193 * 6 5 3 8 8 N 1.34781 * 119.99847 * 173.73296 * 6 5 3 9 9 C 1.47080 * 120.88067 * 359.72405 * 8 6 5 10 10 C 1.53697 * 108.27413 * 128.75184 * 9 8 6 11 11 N 1.46900 * 109.25511 * 54.08461 * 10 9 8 12 12 C 1.46900 * 110.99829 * 172.60575 * 11 10 9 13 13 C 1.50694 * 109.47263 * 294.29951 * 12 11 10 14 14 O 1.21293 * 120.00108 * 0.02562 * 13 12 11 15 15 N 1.34784 * 120.00207 * 179.97438 * 13 12 11 16 16 C 1.37100 * 120.00038 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99679 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99990 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00141 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99979 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47195 * 89.99994 * 20 18 16 22 22 H 1.48503 * 109.47017 * 210.00486 * 20 18 16 23 23 H 1.48499 * 109.47193 * 329.99798 * 20 18 16 24 24 C 1.46903 * 111.27024 * 296.75190 * 11 10 9 25 25 C 1.47077 * 120.87835 * 180.02562 * 8 6 5 26 26 C 1.52996 * 109.47335 * 54.95745 * 3 2 1 27 27 C 1.52998 * 109.47416 * 60.00000 * 26 3 2 28 28 C 1.52998 * 109.47335 * 180.02562 * 26 3 2 29 29 H 1.09005 * 109.47166 * 301.94957 * 1 2 3 30 30 H 1.09000 * 109.47385 * 61.94185 * 1 2 3 31 31 H 1.09001 * 109.47554 * 181.94608 * 1 2 3 32 32 H 1.09001 * 109.47267 * 240.00033 * 2 1 3 33 33 H 1.08999 * 109.47088 * 120.00010 * 2 1 3 34 34 H 1.09000 * 109.46604 * 53.54900 * 5 3 2 35 35 H 1.08995 * 109.47214 * 173.54327 * 5 3 2 36 36 H 1.09000 * 109.62909 * 248.51735 * 9 8 6 37 37 H 1.08995 * 109.62522 * 9.10191 * 9 8 6 38 38 H 1.08995 * 109.64944 * 294.07976 * 10 9 8 39 39 H 1.09000 * 109.44387 * 173.95775 * 10 9 8 40 40 H 1.09006 * 109.47316 * 54.30140 * 12 11 10 41 41 H 1.09009 * 109.47349 * 174.29826 * 12 11 10 42 42 H 0.96998 * 119.99470 * 0.02562 * 15 13 12 43 43 H 0.96998 * 120.00012 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.49158 * 303.14947 * 24 11 10 45 45 H 1.08999 * 109.49255 * 183.06471 * 24 11 10 46 46 H 1.08998 * 109.63525 * 350.89636 * 25 8 6 47 47 H 1.09000 * 109.62991 * 111.48334 * 25 8 6 48 48 H 1.09009 * 109.47079 * 299.99834 * 26 3 2 49 49 H 1.08999 * 109.47298 * 59.99745 * 27 26 3 50 50 H 1.08997 * 109.47402 * 180.02562 * 27 26 3 51 51 H 1.09005 * 109.46960 * 299.99841 * 27 26 3 52 52 H 1.08996 * 109.47213 * 299.99840 * 28 26 3 53 53 H 1.09000 * 109.47253 * 59.99622 * 28 26 3 54 54 H 1.09008 * 109.47575 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1262 1.4439 0.0903 5 6 1.6362 2.1262 -1.3079 6 6 2.3633 1.4792 -2.4583 7 8 3.2122 0.6399 -2.2441 8 7 2.0700 1.8329 -3.7253 9 6 1.0397 2.8439 -4.0076 10 6 1.6434 3.8970 -4.9504 11 7 2.1961 3.2267 -6.1349 12 6 2.6256 4.2065 -7.1417 13 6 1.4228 4.9463 -7.6679 14 8 0.3166 4.6836 -7.2454 15 7 1.5763 5.9006 -8.6072 16 6 0.4820 6.5740 -9.0856 17 1 -0.5029 6.3400 -8.7093 18 6 0.6402 7.5574 -10.0543 19 7 -0.4086 8.2032 -10.5124 20 14 2.3439 7.9625 -10.7044 21 1 2.6416 7.1059 -11.8804 22 1 2.3933 9.3910 -11.1073 23 1 3.3514 7.7128 -9.6424 24 6 3.2991 2.3269 -5.7720 25 6 2.7673 1.2135 -4.8626 26 6 1.4291 2.1994 1.1810 27 6 1.8329 1.5158 2.4888 28 6 1.9386 3.6421 1.1806 29 1 -0.3634 0.5438 0.8720 30 1 -0.3634 0.4834 -0.9069 31 1 -0.3634 -1.0271 0.0349 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5609 2.0243 -1.4542 35 1 1.8978 3.1833 -1.2611 36 1 0.1822 2.3695 -4.4848 37 1 0.7283 3.3189 -3.0773 38 1 2.4369 4.4382 -4.4352 39 1 0.8662 4.5967 -5.2579 40 1 3.3178 4.9152 -6.6869 41 1 3.1223 3.6897 -7.9630 42 1 2.4610 6.1109 -8.9448 43 1 -0.2981 8.8900 -11.1884 44 1 4.0696 2.8900 -5.2454 45 1 3.7223 1.8876 -6.6753 46 1 3.5986 0.6101 -4.4979 47 1 2.0723 0.5856 -5.4202 48 1 0.3427 2.1981 1.0906 49 1 2.9191 1.5171 2.5792 50 1 1.3973 2.0548 3.3301 51 1 1.4695 0.4881 2.4889 52 1 3.0248 3.6438 1.2707 53 1 1.6505 4.1289 0.2488 54 1 1.5037 4.1813 2.0223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113560488.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:28 Heat of formation + Delta-G solvation = -95.216538 kcal Electronic energy + Delta-G solvation = -30691.035624 eV Core-core repulsion = 26661.663129 eV Total energy + Delta-G solvation = -4029.372495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50786 -40.48843 -39.19700 -38.17766 -36.07253 -35.41971 -33.72392 -33.33651 -32.42561 -31.05485 -30.04589 -27.80528 -27.45022 -26.11208 -25.14733 -24.58082 -23.25091 -22.12422 -21.25960 -20.27311 -20.03948 -19.44053 -18.18723 -17.75882 -17.07721 -16.90284 -16.82157 -16.38380 -16.03017 -15.92497 -15.72022 -15.54879 -15.33138 -14.96913 -14.90463 -14.84533 -14.37983 -14.14133 -13.92535 -13.82265 -13.60698 -13.29091 -13.20576 -13.05987 -13.00547 -12.79955 -12.74140 -12.46736 -12.40525 -12.31204 -12.23434 -12.16916 -12.16283 -11.95975 -11.69111 -11.44541 -11.36039 -11.14622 -11.11904 -10.64850 -10.39536 -10.21255 -9.74744 -9.21828 -8.39164 -5.99261 1.31088 1.36436 1.44865 1.63025 1.95232 1.98748 2.24071 2.59935 3.15827 3.21215 3.48207 3.77541 3.87166 3.90453 3.97638 4.04783 4.11547 4.20195 4.22488 4.28866 4.34203 4.41335 4.46618 4.47664 4.51292 4.57803 4.61061 4.64393 4.67537 4.74474 4.82700 4.84609 4.85486 4.92934 5.02059 5.05381 5.07886 5.12545 5.17405 5.23060 5.33047 5.36229 5.45333 5.47227 5.54598 5.58104 5.67876 5.85434 5.99928 6.11847 6.42078 6.61844 6.91060 7.16774 7.42594 7.99018 8.78200 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002133 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.702271 B =13122.985151 C =13612.060319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.060 4.060 4 H 0.059 0.941 5 C -0.140 4.140 6 C 0.514 3.486 7 O -0.576 6.576 8 N -0.615 5.615 9 C 0.122 3.878 10 C 0.040 3.960 11 N -0.535 5.535 12 C 0.055 3.945 13 C 0.453 3.547 14 O -0.601 6.601 15 N -0.593 5.593 16 C -0.322 4.322 17 H 0.058 0.942 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.232 1.232 24 C 0.049 3.951 25 C 0.117 3.883 26 C -0.090 4.090 27 C -0.147 4.147 28 C -0.153 4.153 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.041 0.959 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.048 0.952 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.048 0.952 53 H 0.060 0.940 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.156 -12.213 21.395 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.079 4.079 4 H 0.077 0.923 5 C -0.179 4.179 6 C 0.304 3.696 7 O -0.457 6.457 8 N -0.348 5.348 9 C -0.001 4.001 10 C -0.088 4.088 11 N -0.260 5.260 12 C -0.076 4.076 13 C 0.241 3.759 14 O -0.484 6.484 15 N -0.235 5.235 16 C -0.452 4.452 17 H 0.076 0.924 18 C -0.215 4.215 19 N -0.576 5.576 20 Si 0.783 3.217 21 H -0.183 1.183 22 H -0.203 1.203 23 H -0.155 1.155 24 C -0.079 4.079 25 C -0.006 4.006 26 C -0.109 4.109 27 C -0.204 4.204 28 C -0.210 4.210 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.224 0.776 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.125 0.875 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.067 0.933 53 H 0.079 0.921 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.397 -12.969 21.464 26.780 hybrid contribution 0.999 1.086 -0.746 1.654 sum 10.396 -11.883 20.718 26.048 Atomic orbital electron populations 1.21899 0.95246 1.01741 1.02213 1.21554 0.96339 0.96266 1.01602 1.20895 0.99855 0.94627 0.92487 0.92293 1.21985 1.02037 1.01743 0.92152 1.21210 0.82478 0.81741 0.84129 1.90638 1.35302 1.34909 1.84812 1.48366 1.39326 1.41242 1.05876 1.21931 0.89937 0.88434 0.99776 1.22620 0.99622 0.96421 0.90152 1.61455 1.33068 1.20156 1.11333 1.21816 0.93575 0.94994 0.97218 1.20795 0.91411 0.81909 0.81779 1.90510 1.28760 1.67996 1.61172 1.42059 1.08475 1.34976 1.38013 1.18984 0.88415 1.16925 1.20855 0.92354 1.26080 1.03210 0.95621 0.96577 1.69801 1.32285 1.25182 1.30283 0.85398 0.77670 0.78660 0.80001 1.18309 1.20260 1.15532 1.22533 0.91302 0.94070 1.00045 1.21674 0.97650 0.95049 0.86191 1.21191 1.00895 0.94757 0.94025 1.21862 1.01184 1.00768 0.96628 1.21950 1.01000 0.95843 1.02232 0.91060 0.93033 0.93010 0.93489 0.91691 0.87370 0.87223 0.91113 0.86980 0.94311 0.90129 0.90713 0.86020 0.77645 0.91257 0.94117 0.87549 0.88920 0.90991 0.89884 0.93286 0.92002 0.92283 0.93259 0.92130 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.20 71.98 0.66 -1.53 16 2 C -0.12 -2.10 5.01 30.59 0.15 -1.94 16 3 C -0.06 -0.98 1.39 -10.79 -0.02 -0.99 16 4 H 0.06 1.20 7.81 -2.38 -0.02 1.19 16 5 C -0.14 -2.29 3.25 29.85 0.10 -2.20 16 6 C 0.51 11.86 7.26 87.65 0.64 12.49 16 7 O -0.58 -16.86 13.79 -3.03 -0.04 -16.90 16 8 N -0.61 -13.94 3.00 -816.98 -2.45 -16.39 16 9 C 0.12 2.73 6.48 86.50 0.56 3.29 16 10 C 0.04 1.11 5.27 86.54 0.46 1.57 16 11 N -0.53 -15.00 4.37 -898.78 -3.93 -18.93 16 12 C 0.05 1.59 5.45 85.56 0.47 2.05 16 13 C 0.45 19.34 7.44 87.65 0.65 19.99 16 14 O -0.60 -31.04 13.91 -3.07 -0.04 -31.09 16 15 N -0.59 -26.88 5.09 -306.98 -1.56 -28.44 16 16 C -0.32 -18.32 10.16 84.04 0.85 -17.47 16 17 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 18 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 19 N -0.93 -55.49 13.96 21.66 0.30 -55.19 16 20 Si 0.96 38.03 27.74 68.60 1.90 39.93 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 24 C 0.05 1.03 5.62 86.40 0.49 1.52 16 25 C 0.12 2.61 6.60 86.36 0.57 3.18 16 26 C -0.09 -1.11 2.02 -10.80 -0.02 -1.14 16 27 C -0.15 -1.72 8.84 71.98 0.64 -1.08 16 28 C -0.15 -1.81 8.85 71.98 0.64 -1.18 16 29 H 0.07 0.83 6.23 -2.38 -0.01 0.81 16 30 H 0.05 0.75 6.53 -2.39 -0.02 0.74 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.09 6.24 -2.39 -0.01 1.07 16 33 H 0.06 1.07 6.71 -2.39 -0.02 1.05 16 34 H 0.11 1.50 5.86 -2.39 -0.01 1.48 16 35 H 0.11 1.53 5.91 -2.39 -0.01 1.51 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 1.86 6.04 -2.39 -0.01 1.85 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 2.84 5.76 -2.39 -0.01 2.82 16 40 H 0.08 1.83 8.12 -2.38 -0.02 1.82 16 41 H 0.12 2.84 7.97 -2.38 -0.02 2.82 16 42 H 0.39 14.59 5.76 -92.71 -0.53 14.06 16 43 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.11 1.85 7.99 -2.39 -0.02 1.83 16 46 H 0.09 2.10 7.06 -2.39 -0.02 2.08 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.08 0.92 6.30 -2.38 -0.02 0.91 16 49 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.68 6.55 -2.38 -0.02 0.67 16 52 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.06 0.68 6.29 -2.39 -0.02 0.67 16 54 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -75.01 403.06 1.78 -73.23 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.31 Total: 37.64 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.30 Total: 16.14 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -7.64 Total: -118.95 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.08 Total: -47.98 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.93 kcal Total: -75.01 1.78 -73.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113560488.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.991 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds