Wall clock time and date at job start Tue Mar 31 2020 22:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46795 * 2 1 4 4 H 1.08996 * 109.47509 * 304.99977 * 3 2 1 5 5 C 1.52996 * 109.47403 * 65.00242 * 3 2 1 6 6 C 1.50702 * 109.46943 * 184.99866 * 3 2 1 7 7 O 1.21279 * 120.00285 * 0.02562 * 6 3 2 8 8 N 1.34784 * 119.99756 * 179.97438 * 6 3 2 9 9 C 1.46507 * 119.99543 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.46574 * 174.35948 * 9 8 6 11 11 N 1.46903 * 109.47121 * 305.31717 * 10 9 8 12 12 C 1.46895 * 111.00301 * 305.21089 * 11 10 9 13 13 C 1.50698 * 109.47462 * 185.17484 * 12 11 10 14 14 O 1.21297 * 119.99911 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00134 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99694 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00433 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99805 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99661 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99858 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47101 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47051 * 120.00061 * 20 18 16 23 23 H 1.48503 * 109.46558 * 239.99943 * 20 18 16 24 24 C 1.53005 * 109.46710 * 185.32304 * 10 9 8 25 25 C 1.53001 * 109.47073 * 180.02562 * 24 10 9 26 26 C 1.53004 * 109.47033 * 59.99709 * 25 24 10 27 27 C 1.53003 * 109.46921 * 299.99930 * 26 25 24 28 28 C 1.52991 * 109.47222 * 65.31993 * 10 9 8 29 29 H 1.09003 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47010 * 299.99974 * 1 2 3 31 31 H 1.08996 * 109.46985 * 60.00281 * 1 2 3 32 32 H 1.08997 * 109.47010 * 240.00025 * 2 1 3 33 33 H 1.08996 * 109.46913 * 120.00271 * 2 1 3 34 34 H 1.09002 * 109.47010 * 299.99986 * 5 3 2 35 35 H 1.09005 * 109.47587 * 59.99544 * 5 3 2 36 36 H 1.08998 * 109.47695 * 179.97438 * 5 3 2 37 37 H 0.96988 * 120.00274 * 0.02562 * 8 6 3 38 38 H 1.08997 * 109.47499 * 294.36389 * 9 8 6 39 39 H 1.09004 * 109.46795 * 54.36098 * 9 8 6 40 40 H 1.00894 * 110.99686 * 69.16890 * 11 10 9 41 41 H 1.09005 * 109.47220 * 305.17720 * 12 11 10 42 42 H 1.09005 * 109.47057 * 65.17365 * 12 11 10 43 43 H 0.97000 * 120.00110 * 359.97438 * 15 13 12 44 44 H 0.97001 * 119.99563 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.46684 * 299.99874 * 24 10 9 46 46 H 1.08996 * 109.47750 * 59.99552 * 24 10 9 47 47 H 1.08992 * 109.47061 * 299.99746 * 25 24 10 48 48 H 1.08994 * 109.47165 * 179.97438 * 25 24 10 49 49 H 1.09001 * 109.47155 * 180.02562 * 26 25 24 50 50 H 1.09000 * 109.47308 * 59.99838 * 26 25 24 51 51 H 1.09000 * 109.47054 * 300.00063 * 27 26 25 52 52 H 1.09006 * 109.46602 * 180.02562 * 27 26 25 53 53 H 1.08996 * 109.47561 * 299.99702 * 28 10 9 54 54 H 1.09006 * 109.46897 * 59.99923 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2046 8 7 4.2148 2.6119 -0.1458 9 6 5.6750 2.6137 -0.2656 10 6 6.1732 4.0533 -0.4078 11 7 5.4863 4.7002 -1.5337 12 6 5.6448 3.9177 -2.7668 13 6 5.0385 4.6721 -3.9219 14 8 4.5244 5.7550 -3.7361 15 7 5.0665 4.1433 -5.1612 16 6 4.5144 4.8294 -6.2120 17 1 4.0574 5.7939 -6.0467 18 6 4.5437 4.2844 -7.4899 19 7 5.1011 3.1115 -7.6912 20 14 3.7922 5.2196 -8.9216 21 1 3.2331 6.5059 -8.4337 22 1 4.8382 5.4887 -9.9407 23 1 2.7072 4.4073 -9.5284 24 6 7.6813 4.0478 -0.6656 25 6 8.1797 5.4874 -0.8072 26 6 7.8853 6.2581 0.4814 27 6 6.3772 6.2635 0.7390 28 6 5.8787 4.8244 0.8803 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5489 2.1252 1.3969 35 1 2.0699 1.5875 2.1492 36 1 1.9989 3.1540 1.3076 37 1 3.7325 3.4509 -0.0815 38 1 6.1132 2.1638 0.6253 39 1 5.9681 2.0392 -1.1444 40 1 4.5110 4.8508 -1.3239 41 1 6.7050 3.7514 -2.9579 42 1 5.1407 2.9577 -2.6553 43 1 5.4772 3.2772 -5.3098 44 1 5.1219 2.7312 -8.5833 45 1 8.1909 3.5677 0.1698 46 1 7.8912 3.4983 -1.5833 47 1 7.6702 5.9678 -1.6424 48 1 9.2542 5.4835 -0.9904 49 1 8.2400 7.2838 0.3803 50 1 8.3949 5.7776 1.3166 51 1 5.8676 6.7439 -0.0962 52 1 6.1674 6.8130 1.6568 53 1 4.8043 4.8284 1.0640 54 1 6.3884 4.3444 1.7158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115414213.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:28 Heat of formation + Delta-G solvation = -124.752509 kcal Electronic energy + Delta-G solvation = -31508.689866 eV Core-core repulsion = 27478.036595 eV Total energy + Delta-G solvation = -4030.653271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58667 -40.43392 -39.64634 -36.50775 -36.20440 -35.91842 -34.54204 -33.24641 -31.74667 -31.46270 -30.43611 -28.05742 -27.09015 -25.93808 -25.79020 -23.67397 -22.69073 -21.75552 -21.01454 -20.81912 -19.95422 -19.80102 -18.34498 -17.85904 -17.13101 -16.92592 -16.77179 -16.31581 -16.08827 -15.90721 -15.71179 -15.42604 -15.30779 -14.98411 -14.69601 -14.42819 -14.37390 -14.26004 -13.95354 -13.54971 -13.51664 -13.21206 -13.14761 -12.98735 -12.93652 -12.71865 -12.64075 -12.62555 -12.55063 -12.50852 -12.39366 -12.11515 -11.84425 -11.75111 -11.62937 -11.50769 -11.34459 -11.09208 -10.83677 -10.75284 -10.33954 -10.14803 -10.01238 -9.29773 -8.46700 -5.95543 1.35874 1.40838 1.55193 1.59856 2.05323 2.12741 2.28475 2.88592 3.20444 3.47230 3.62672 3.66992 3.75293 3.84515 3.92967 3.96415 4.22754 4.28373 4.34038 4.37768 4.39990 4.48552 4.50957 4.51668 4.58176 4.61234 4.65054 4.68862 4.73856 4.77848 4.82189 4.95561 5.00172 5.00570 5.07792 5.08959 5.16015 5.17830 5.30857 5.35059 5.40372 5.41826 5.43256 5.46870 5.47771 5.51357 5.75244 5.90261 6.09862 6.40102 6.45022 6.59257 7.12616 7.18023 7.56245 8.10955 8.71085 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007125 B = 0.003952 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.789618 B = 7083.168122 C =10002.250177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.111 4.111 4 H 0.102 0.898 5 C -0.138 4.138 6 C 0.513 3.487 7 O -0.584 6.584 8 N -0.717 5.717 9 C 0.092 3.908 10 C 0.114 3.886 11 N -0.645 5.645 12 C 0.066 3.934 13 C 0.443 3.557 14 O -0.615 6.615 15 N -0.576 5.576 16 C -0.330 4.330 17 H 0.081 0.919 18 C -0.014 4.014 19 N -0.923 5.923 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.103 4.103 25 C -0.110 4.110 26 C -0.110 4.110 27 C -0.111 4.111 28 C -0.098 4.098 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.407 0.593 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.342 0.658 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.392 0.608 44 H 0.276 0.724 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.071 0.929 51 H 0.053 0.947 52 H 0.069 0.931 53 H 0.068 0.932 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 -1.588 21.479 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.132 4.132 4 H 0.120 0.880 5 C -0.196 4.196 6 C 0.300 3.700 7 O -0.464 6.464 8 N -0.370 5.370 9 C -0.034 4.034 10 C 0.023 3.977 11 N -0.278 5.278 12 C -0.066 4.066 13 C 0.230 3.770 14 O -0.501 6.501 15 N -0.214 5.214 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.564 5.564 20 Si 0.816 3.184 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.148 4.148 27 C -0.149 4.149 28 C -0.136 4.136 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.161 0.839 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.226 0.774 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.088 0.912 53 H 0.087 0.913 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.882 -1.273 21.234 21.291 hybrid contribution -0.679 -0.707 -1.277 1.610 sum -1.562 -1.980 19.957 20.115 Atomic orbital electron populations 1.21818 0.93602 1.02465 1.02720 1.21300 0.96938 0.94058 1.01884 1.21422 0.89655 0.99784 1.02386 0.87957 1.21814 1.03532 1.00321 0.93908 1.21249 0.91194 0.83047 0.74467 1.90672 1.71452 1.32939 1.51297 1.45949 1.07709 1.08922 1.74408 1.22089 0.80414 0.98954 1.01959 1.21307 0.95374 0.89439 0.91584 1.60214 1.18983 1.47858 1.00710 1.21488 1.01546 0.94176 0.89402 1.20773 0.84179 0.87507 0.84525 1.90487 1.50795 1.23898 1.84889 1.41965 1.52485 1.20367 1.06540 1.19705 1.35454 1.03504 0.87277 0.90106 1.26052 0.97559 0.96992 1.00782 1.69696 1.44869 1.17636 1.24244 0.84873 0.78069 0.78083 0.77337 1.19542 1.19723 1.19716 1.21541 0.92717 0.97824 1.02005 1.21354 0.99731 0.95113 0.98614 1.21454 0.96329 0.99802 0.97200 1.21392 0.95956 0.96099 1.01445 1.21549 1.01537 0.95812 0.94679 0.92099 0.90772 0.92605 0.93682 0.92011 0.89465 0.92269 0.91043 0.75571 0.90580 0.92978 0.83863 0.88444 0.93204 0.77433 0.91422 0.89573 0.92820 0.93339 0.92175 0.92549 0.91034 0.92771 0.91199 0.91310 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 71.98 0.70 -1.56 16 2 C -0.10 -2.12 4.75 30.59 0.15 -1.98 16 3 C -0.11 -2.15 2.72 -11.54 -0.03 -2.18 16 4 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.14 -1.79 8.84 71.98 0.64 -1.16 16 6 C 0.51 13.07 7.15 87.66 0.63 13.70 16 7 O -0.58 -19.85 15.91 -3.03 -0.05 -19.89 16 8 N -0.72 -15.28 4.93 -463.03 -2.28 -17.56 16 9 C 0.09 2.04 3.87 86.38 0.33 2.38 16 10 C 0.11 2.38 0.30 3.53 0.00 2.38 16 11 N -0.65 -18.12 4.02 -474.15 -1.90 -20.02 16 12 C 0.07 2.28 5.28 85.56 0.45 2.73 16 13 C 0.44 20.89 7.83 87.66 0.69 21.58 16 14 O -0.61 -33.04 15.89 -3.08 -0.05 -33.09 16 15 N -0.58 -29.98 5.29 -306.98 -1.62 -31.60 16 16 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 17 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 19 N -0.92 -50.88 13.05 21.67 0.28 -50.60 16 20 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 C -0.10 -2.13 4.51 30.60 0.14 -1.99 16 25 C -0.11 -2.46 5.77 30.60 0.18 -2.28 16 26 C -0.11 -2.02 5.92 30.60 0.18 -1.84 16 27 C -0.11 -2.05 5.76 30.58 0.18 -1.87 16 28 C -0.10 -1.59 4.67 30.57 0.14 -1.45 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.87 6.56 -2.39 -0.02 0.85 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 1.14 7.95 -2.39 -0.02 1.12 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 0.87 6.56 -2.39 -0.02 0.86 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 0.76 7.56 -2.39 -0.02 0.74 16 37 H 0.41 7.18 5.82 -92.72 -0.54 6.64 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.42 6.76 -2.38 -0.02 1.41 16 40 H 0.34 9.67 7.28 -89.70 -0.65 9.01 16 41 H 0.10 3.20 6.22 -2.38 -0.01 3.19 16 42 H 0.05 1.69 6.60 -2.38 -0.02 1.67 16 43 H 0.39 19.90 7.90 -92.71 -0.73 19.17 16 44 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 1.24 6.42 -2.39 -0.02 1.23 16 47 H 0.05 1.42 7.60 -2.39 -0.02 1.41 16 48 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.05 1.31 7.60 -2.39 -0.02 1.30 16 52 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 53 H 0.07 0.99 7.08 -2.39 -0.02 0.97 16 54 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -70.81 413.29 1.03 -69.78 By element: Atomic # 1 Polarization: 50.54 SS G_CDS: -1.01 Total: 49.53 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.64 Total: 8.12 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.53 Total: -119.79 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.10 Total: -52.99 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.81 1.03 -69.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115414213.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.970 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds