Wall clock time and date at job start Tue Mar 31 2020 22:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46783 * 2 1 4 4 H 1.09004 * 109.46716 * 55.00767 * 3 2 1 5 5 C 1.52994 * 109.47487 * 295.00350 * 3 2 1 6 6 C 1.52999 * 109.46645 * 175.00106 * 3 2 1 7 7 H 1.08999 * 109.47383 * 60.00604 * 6 3 2 8 8 C 1.52999 * 109.47357 * 299.99782 * 6 3 2 9 9 C 1.50706 * 109.46628 * 180.02562 * 6 3 2 10 10 O 1.21274 * 120.00621 * 33.96391 * 9 6 3 11 11 N 1.34891 * 119.99682 * 213.96194 * 9 6 3 12 12 C 1.47760 * 121.44402 * 354.86200 * 11 9 6 13 13 C 1.52894 * 109.29863 * 263.18228 * 12 11 9 14 14 C 1.50756 * 109.53607 * 292.26292 * 13 12 11 15 15 O 1.21254 * 120.23038 * 294.78776 * 14 13 12 16 16 N 1.36026 * 118.98430 * 114.94682 * 14 13 12 17 17 C 1.47585 * 117.00930 * 189.33941 * 16 14 13 18 18 C 1.52988 * 108.80767 * 118.96596 * 17 16 14 19 19 N 1.47751 * 109.12608 * 295.89418 * 18 17 16 20 20 C 1.36983 * 121.46331 * 259.64796 * 19 18 17 21 21 H 1.07992 * 119.99972 * 24.89892 * 20 19 18 22 22 C 1.38812 * 119.99646 * 204.90184 * 20 19 18 23 23 N 1.31619 * 120.00195 * 15.20387 * 22 20 19 24 24 Si 1.86799 * 119.99706 * 195.20717 * 22 20 19 25 25 H 1.48498 * 109.47301 * 94.94864 * 24 22 20 26 26 H 1.48502 * 109.47067 * 214.94650 * 24 22 20 27 27 H 1.48495 * 109.47059 * 334.94798 * 24 22 20 28 28 C 1.47812 * 116.77091 * 80.02536 * 19 18 17 29 29 C 1.47742 * 121.78533 * 174.26773 * 11 9 6 30 30 H 1.09002 * 109.46477 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46809 * 299.99623 * 1 2 3 32 32 H 1.08998 * 109.47089 * 59.99862 * 1 2 3 33 33 H 1.09002 * 109.46809 * 240.00377 * 2 1 3 34 34 H 1.08998 * 109.47089 * 120.00138 * 2 1 3 35 35 H 1.09004 * 109.47249 * 59.99480 * 5 3 2 36 36 H 1.08996 * 109.47027 * 180.02562 * 5 3 2 37 37 H 1.09005 * 109.46744 * 299.99879 * 5 3 2 38 38 H 1.09003 * 109.46645 * 58.34415 * 8 6 3 39 39 H 1.08999 * 109.47398 * 178.33989 * 8 6 3 40 40 H 1.08998 * 109.47899 * 298.34545 * 8 6 3 41 41 H 1.09068 * 109.47515 * 23.17740 * 12 11 9 42 42 H 1.09044 * 109.54445 * 143.06814 * 12 11 9 43 43 H 1.08916 * 109.71076 * 52.46200 * 13 12 11 44 44 H 1.09096 * 109.43253 * 172.41613 * 13 12 11 45 45 H 0.97109 * 121.46464 * 8.31941 * 16 14 13 46 46 H 1.08872 * 110.03656 * 358.76919 * 17 16 14 47 47 H 1.09133 * 109.42099 * 238.46371 * 17 16 14 48 48 H 1.09031 * 109.50609 * 176.01244 * 18 17 16 49 49 H 1.09018 * 109.60091 * 55.89303 * 18 17 16 50 50 H 0.96998 * 119.99958 * 179.97438 * 23 22 20 51 51 H 1.08969 * 109.36929 * 352.89076 * 28 19 18 52 52 H 1.09142 * 109.24883 * 112.53888 * 28 19 18 53 53 H 1.09162 * 109.29222 * 299.91286 * 29 11 9 54 54 H 1.09020 * 109.36816 * 180.28822 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9696 0.7603 1.4330 9 6 4.0670 2.8653 0.1263 10 8 3.4028 3.7430 0.6353 11 7 5.2554 3.1607 -0.4392 12 6 6.1416 2.1032 -0.9682 13 6 7.1943 1.7532 0.0839 14 6 8.1295 2.9210 0.2693 15 8 8.8503 3.2761 -0.6387 16 7 8.1521 3.5634 1.4681 17 6 8.9190 4.8223 1.5396 18 6 7.9660 5.9600 1.9111 19 7 6.9733 6.1324 0.8304 20 6 7.0996 7.1254 -0.1047 21 1 8.0735 7.5342 -0.3299 22 6 5.9758 7.6062 -0.7625 23 7 4.7749 7.3392 -0.2948 24 14 6.1681 8.6320 -2.3118 25 1 6.0555 7.7540 -3.5040 26 1 5.1030 9.6659 -2.3561 27 1 7.4984 9.2918 -2.3067 28 6 5.8362 5.1881 0.8140 29 6 5.7291 4.5539 -0.5722 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 0.5488 2.1252 -1.3968 36 1 1.9989 3.1541 -1.3073 37 1 2.0698 1.5876 -2.1491 38 1 3.5811 -0.2580 1.4457 39 1 5.0567 0.7353 1.5086 40 1 3.5595 1.3162 2.2762 41 1 5.5505 1.2169 -1.2021 42 1 6.6335 2.4588 -1.8741 43 1 6.7061 1.5249 1.0303 44 1 7.7637 0.8837 -0.2478 45 1 7.6725 3.2167 2.2381 46 1 9.3825 5.0319 0.5770 47 1 9.6927 4.7330 2.3040 48 1 8.5324 6.8831 2.0365 49 1 7.4536 5.7183 2.8426 50 1 3.9896 7.6754 -0.7544 51 1 5.9967 4.4160 1.5660 52 1 4.9161 5.7290 1.0418 53 1 5.0196 5.1197 -1.1789 54 1 6.7044 4.5592 -1.0593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131392890.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:29 Heat of formation + Delta-G solvation = -72.348888 kcal Electronic energy + Delta-G solvation = -33432.033416 eV Core-core repulsion = 29403.652536 eV Total energy + Delta-G solvation = -4028.380880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47304 -40.37564 -38.08813 -37.49066 -36.71158 -35.35665 -33.24818 -32.95981 -31.92493 -30.77202 -30.18742 -28.51158 -26.37049 -25.36535 -25.13076 -24.67457 -23.25884 -22.06597 -21.25998 -20.89892 -19.40587 -18.67616 -18.25944 -17.90234 -17.37066 -16.70226 -16.52336 -16.41441 -15.96811 -15.78656 -15.44331 -15.18741 -15.07434 -14.82185 -14.48021 -14.32757 -14.26816 -14.03507 -13.92211 -13.54007 -13.44423 -13.22638 -13.17714 -12.92971 -12.83656 -12.77617 -12.68230 -12.55530 -12.38768 -12.38536 -12.12279 -11.98858 -11.93182 -11.81622 -11.55802 -11.48801 -11.34633 -11.26043 -10.78129 -10.64717 -10.36294 -9.92148 -9.60854 -8.62662 -7.68982 -5.29789 1.38529 1.41191 1.48961 1.71253 1.88629 2.09150 2.48781 2.54224 3.32550 3.52949 3.65997 3.73473 3.85150 3.97933 4.05679 4.19389 4.25130 4.32722 4.41468 4.42823 4.48301 4.51257 4.58386 4.63478 4.68692 4.69335 4.74766 4.77954 4.78993 4.81884 4.85456 4.95285 4.98021 5.01857 5.09604 5.13860 5.15711 5.24520 5.28080 5.33428 5.33620 5.42142 5.56062 5.60593 5.61007 5.62563 5.71920 5.99014 6.32436 6.70797 6.74766 7.15107 7.42721 7.44202 7.86076 8.38915 9.20104 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.004704 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.247047 B = 5951.405757 C = 7443.982891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.073 4.073 4 H 0.053 0.947 5 C -0.149 4.149 6 C -0.098 4.098 7 H 0.116 0.884 8 C -0.140 4.140 9 C 0.511 3.489 10 O -0.574 6.574 11 N -0.620 5.620 12 C 0.110 3.890 13 C -0.150 4.150 14 C 0.514 3.486 15 O -0.587 6.587 16 N -0.717 5.717 17 C 0.098 3.902 18 C 0.123 3.877 19 N -0.608 5.608 20 C -0.250 4.250 21 H 0.062 0.938 22 C -0.042 4.042 23 N -0.913 5.913 24 Si 0.945 3.055 25 H -0.295 1.295 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.186 3.814 29 C 0.145 3.855 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.016 0.984 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.133 0.867 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.139 0.861 45 H 0.412 0.588 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.241 0.759 51 H 0.039 0.961 52 H 0.031 0.969 53 H 0.020 0.980 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -22.432 3.764 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.092 4.092 4 H 0.071 0.929 5 C -0.206 4.206 6 C -0.119 4.119 7 H 0.134 0.866 8 C -0.197 4.197 9 C 0.301 3.699 10 O -0.452 6.452 11 N -0.354 5.354 12 C -0.013 4.013 13 C -0.191 4.191 14 C 0.302 3.698 15 O -0.468 6.468 16 N -0.371 5.371 17 C -0.029 4.029 18 C -0.004 4.004 19 N -0.332 5.332 20 C -0.380 4.380 21 H 0.080 0.920 22 C -0.239 4.239 23 N -0.559 5.559 24 Si 0.775 3.225 25 H -0.222 1.222 26 H -0.223 1.223 27 H -0.192 1.192 28 C 0.060 3.940 29 C 0.021 3.979 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.150 0.850 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.157 0.843 45 H 0.249 0.751 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.050 0.950 51 H 0.057 0.943 52 H 0.049 0.951 53 H 0.038 0.962 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.909 -21.607 3.374 21.888 hybrid contribution -0.350 1.695 -0.787 1.902 sum -1.260 -19.911 2.587 20.118 Atomic orbital electron populations 1.21834 0.95968 1.02079 1.01423 1.21611 0.95879 0.93766 1.03550 1.20994 0.92754 0.97797 0.97625 0.92857 1.21884 1.01761 0.98991 0.97976 1.21510 0.97098 0.90619 1.02695 0.86642 1.21873 1.02545 1.01535 0.93776 1.21422 0.79576 0.92189 0.76692 1.90747 1.57357 1.51184 1.45949 1.49110 1.19247 1.07369 1.59670 1.22009 0.91430 0.92198 0.95667 1.22294 0.97029 0.97026 1.02763 1.21424 0.82154 0.84492 0.81708 1.90657 1.44587 1.69169 1.42338 1.46428 1.53280 1.24571 1.12795 1.22213 0.94292 0.84190 1.02178 1.21639 0.91386 0.97010 0.90324 1.44756 1.25713 1.32557 1.30160 1.19246 0.92032 1.12462 1.14287 0.91986 1.25550 0.95260 1.00687 1.02361 1.70197 0.97074 1.49075 1.39540 0.85562 0.77328 0.78546 0.81069 1.22239 1.22276 1.19152 1.20921 0.90814 0.89443 0.92780 1.21815 0.96471 0.80193 0.99372 0.91302 0.93638 0.93133 0.90360 0.89890 0.91806 0.96520 0.91413 0.88097 0.90716 0.93806 0.84973 0.91501 0.87535 0.84311 0.75055 0.92177 0.89161 0.92026 0.93503 0.94970 0.94270 0.95110 0.96191 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.67 71.98 0.70 -1.60 16 2 C -0.11 -1.58 5.19 30.60 0.16 -1.42 16 3 C -0.07 -1.63 1.65 -10.79 -0.02 -1.64 16 4 H 0.05 1.51 7.85 -2.38 -0.02 1.49 16 5 C -0.15 -3.84 8.69 71.98 0.63 -3.22 16 6 C -0.10 -2.10 1.79 -11.54 -0.02 -2.12 16 7 H 0.12 1.78 5.88 -2.39 -0.01 1.76 16 8 C -0.14 -2.18 8.88 71.98 0.64 -1.54 16 9 C 0.51 17.51 5.51 87.64 0.48 17.99 16 10 O -0.57 -26.52 14.58 -3.01 -0.04 -26.57 16 11 N -0.62 -21.45 2.61 -815.38 -2.13 -23.57 16 12 C 0.11 2.64 5.58 86.10 0.48 3.12 16 13 C -0.15 -3.05 6.09 29.83 0.18 -2.86 16 14 C 0.51 16.03 5.02 87.48 0.44 16.47 16 15 O -0.59 -23.95 15.80 -2.95 -0.05 -23.99 16 16 N -0.72 -20.76 3.65 -458.93 -1.68 -22.44 16 17 C 0.10 3.21 6.68 86.17 0.58 3.79 16 18 C 0.12 4.80 6.07 86.14 0.52 5.33 16 19 N -0.61 -30.53 2.72 -695.55 -1.90 -32.43 16 20 C -0.25 -14.10 9.19 84.03 0.77 -13.33 16 21 H 0.06 3.49 7.87 -2.91 -0.02 3.46 16 22 C -0.04 -2.45 4.49 84.86 0.38 -2.07 16 23 N -0.91 -56.66 9.77 21.65 0.21 -56.45 16 24 Si 0.95 47.72 29.58 68.60 2.03 49.75 16 25 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 26 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 27 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 28 C 0.19 9.20 3.48 86.07 0.30 9.50 16 29 C 0.15 6.89 3.99 86.08 0.34 7.23 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.80 6.56 -2.39 -0.02 0.79 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.93 6.14 -2.39 -0.01 0.91 16 35 H 0.06 1.50 6.56 -2.39 -0.02 1.49 16 36 H 0.02 0.56 6.79 -2.39 -0.02 0.55 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.10 0.95 6.24 -2.39 -0.01 0.93 16 39 H 0.07 0.93 6.22 -2.39 -0.01 0.91 16 40 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 1.95 5.65 -2.35 -0.01 1.94 16 42 H 0.07 1.91 7.82 -2.36 -0.02 1.89 16 43 H 0.11 1.64 6.00 -2.43 -0.01 1.63 16 44 H 0.14 1.87 8.15 -2.34 -0.02 1.85 16 45 H 0.41 9.53 8.38 -92.63 -0.78 8.76 16 46 H 0.06 2.43 6.78 -2.45 -0.02 2.42 16 47 H 0.09 2.28 8.15 -2.32 -0.02 2.27 16 48 H 0.06 2.39 8.02 -2.37 -0.02 2.38 16 49 H 0.05 1.70 8.08 -2.38 -0.02 1.68 16 50 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 51 H 0.04 1.72 6.13 -2.40 -0.01 1.70 16 52 H 0.03 1.90 5.92 -2.31 -0.01 1.88 16 53 H 0.02 1.14 6.84 -2.30 -0.02 1.12 16 54 H 0.05 2.74 6.10 -2.38 -0.01 2.73 16 Total: -1.00 -82.55 393.16 3.14 -79.41 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.13 Total: 22.68 kcal Atomic # 6 Polarization: 27.06 SS G_CDS: 6.56 Total: 33.62 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -5.49 Total: -134.89 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.09 Total: -50.56 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -82.55 3.14 -79.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131392890.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.062 kcal (2) G-P(sol) polarization free energy of solvation -82.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds