Wall clock time and date at job start Tue Mar 31 2020 23:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47185 * 2 1 4 4 H 1.09003 * 109.47042 * 305.00092 * 3 2 1 5 5 C 1.52996 * 109.47471 * 65.00171 * 3 2 1 6 6 C 1.50702 * 109.47373 * 185.00364 * 3 2 1 7 7 O 1.21289 * 119.99679 * 333.17433 * 6 3 2 8 8 N 1.34777 * 120.00534 * 153.17024 * 6 3 2 9 9 C 1.46500 * 120.00079 * 184.76009 * 8 6 3 10 10 C 1.50705 * 109.46773 * 185.44267 * 9 8 6 11 11 O 1.21275 * 120.00178 * 2.90613 * 10 9 8 12 12 N 1.34777 * 119.99831 * 182.90877 * 10 9 8 13 13 C 1.46958 * 120.65255 * 5.09987 * 12 10 9 14 14 C 1.53196 * 108.89167 * 233.53341 * 13 12 10 15 15 C 1.53035 * 109.31110 * 305.44899 * 14 13 12 16 16 C 1.53041 * 109.54258 * 61.36049 * 15 14 13 17 17 C 1.46927 * 120.63048 * 185.28676 * 12 10 9 18 18 H 1.09002 * 109.58065 * 246.32009 * 17 12 10 19 19 C 1.53002 * 109.58627 * 6.60158 * 17 12 10 20 20 N 1.46503 * 109.46727 * 177.96721 * 19 17 12 21 21 C 1.46505 * 119.99839 * 269.03301 * 20 19 17 22 22 C 1.36933 * 119.99929 * 89.04121 * 20 19 17 23 23 H 1.08001 * 119.99819 * 343.99318 * 22 20 19 24 24 C 1.38812 * 119.99778 * 163.99785 * 22 20 19 25 25 N 1.31611 * 119.99967 * 344.82351 * 24 22 20 26 26 Si 1.86800 * 119.99698 * 165.10716 * 24 22 20 27 27 H 1.48500 * 109.46865 * 274.75141 * 26 24 22 28 28 H 1.48497 * 109.47496 * 34.75163 * 26 24 22 29 29 H 1.48493 * 109.47227 * 154.75677 * 26 24 22 30 30 H 1.08994 * 109.47438 * 60.00261 * 1 2 3 31 31 H 1.09005 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46915 * 300.00151 * 1 2 3 33 33 H 1.09001 * 109.47430 * 239.99961 * 2 1 3 34 34 H 1.09003 * 109.47344 * 119.99911 * 2 1 3 35 35 H 1.09002 * 109.46956 * 292.73343 * 5 3 2 36 36 H 1.08995 * 109.46868 * 52.73142 * 5 3 2 37 37 H 1.09002 * 109.47480 * 172.73067 * 5 3 2 38 38 H 0.96995 * 119.99574 * 4.76453 * 8 6 3 39 39 H 1.09000 * 109.46882 * 65.44507 * 9 8 6 40 40 H 1.08993 * 109.47137 * 305.43921 * 9 8 6 41 41 H 1.09004 * 109.46707 * 113.75210 * 13 12 10 42 42 H 1.09002 * 109.71428 * 353.46663 * 13 12 10 43 43 H 1.08997 * 109.50033 * 185.49561 * 14 13 12 44 44 H 1.08999 * 109.52125 * 65.41498 * 14 13 12 45 45 H 1.09003 * 109.46097 * 301.33907 * 15 14 13 46 46 H 1.08999 * 109.45953 * 181.38221 * 15 14 13 47 47 H 1.08997 * 109.49802 * 178.68108 * 16 15 14 48 48 H 1.09000 * 109.49135 * 58.58734 * 16 15 14 49 49 H 1.08995 * 109.46902 * 57.96618 * 19 17 12 50 50 H 1.08997 * 109.47190 * 297.96894 * 19 17 12 51 51 H 1.09002 * 109.47213 * 264.53631 * 21 20 19 52 52 H 1.08998 * 109.47035 * 24.53910 * 21 20 19 53 53 H 1.08994 * 109.46887 * 144.53572 * 21 20 19 54 54 H 0.97001 * 119.99818 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1841 0.4943 0.2712 8 7 4.1715 2.5015 -0.6738 9 6 5.6199 2.4604 -0.8898 10 6 6.0918 3.8025 -1.3872 11 8 5.3058 4.7197 -1.4954 12 7 7.3873 3.9833 -1.7117 13 6 8.3289 2.8552 -1.6930 14 6 9.5304 3.2264 -0.8180 15 6 10.1339 4.5407 -1.3182 16 6 9.0927 5.6569 -1.2078 17 6 7.8864 5.3133 -2.0872 18 1 8.1875 5.3081 -3.1348 19 6 6.7843 6.3532 -1.8754 20 7 7.2997 7.6846 -2.2043 21 6 7.9129 8.5109 -1.1614 22 6 7.2080 8.1567 -3.4864 23 1 7.0023 7.4759 -4.2991 24 6 7.3796 9.5104 -3.7414 25 7 7.3317 10.3776 -2.7525 26 14 7.6705 10.1019 -5.4892 27 1 9.1178 10.0091 -5.8087 28 1 6.8998 9.2540 -6.4337 29 1 7.2256 11.5131 -5.6148 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5517 2.2410 1.3372 36 1 1.9598 1.5180 2.1513 37 1 2.1060 3.1080 1.3648 38 1 3.6656 3.2896 -0.9265 39 1 5.8553 1.6954 -1.6298 40 1 6.1207 2.2243 0.0490 41 1 8.6668 2.6471 -2.7083 42 1 7.8374 1.9727 -1.2834 43 1 10.2798 2.4369 -0.8751 44 1 9.2053 3.3454 0.2156 45 1 10.4368 4.4283 -2.3592 46 1 11.0039 4.7945 -0.7126 47 1 9.5307 6.5973 -1.5422 48 1 8.7713 5.7532 -0.1707 49 1 6.4629 6.3350 -0.8341 50 1 5.9373 6.1217 -2.5211 51 1 7.1674 9.1934 -0.7534 52 1 8.2924 7.8696 -0.3660 53 1 8.7352 9.0845 -1.5891 54 1 7.4512 11.3235 -2.9308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158872538.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:50 Heat of formation + Delta-G solvation = -68.909728 kcal Electronic energy + Delta-G solvation = -31126.476230 eV Core-core repulsion = 27098.244483 eV Total energy + Delta-G solvation = -4028.231747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80654 -40.80072 -38.63391 -37.34532 -36.42127 -35.58425 -34.03230 -33.74053 -31.77132 -30.85705 -29.16456 -28.18229 -27.53151 -26.10988 -25.51218 -23.93303 -22.88368 -22.12922 -21.77879 -20.98209 -19.96000 -18.88194 -18.38804 -17.60424 -17.29756 -17.18815 -16.66053 -16.37666 -16.07044 -15.64771 -15.52193 -15.41441 -15.24063 -14.92217 -14.85122 -14.51490 -14.37972 -14.23930 -14.19429 -13.90840 -13.63278 -13.34183 -13.04885 -13.02034 -12.96101 -12.81617 -12.59777 -12.54853 -12.52591 -12.40317 -12.03855 -11.99990 -11.86872 -11.74543 -11.71023 -11.59906 -11.56346 -11.43386 -10.82853 -10.64123 -10.33681 -10.20339 -9.56325 -8.81212 -7.81059 -5.23446 1.45296 1.46822 1.47923 1.55340 1.58726 1.69776 2.29750 2.53590 3.27986 3.38559 3.66643 3.77346 3.85982 3.91545 3.94457 4.00485 4.02734 4.14618 4.25822 4.28687 4.36810 4.43372 4.46032 4.53793 4.61063 4.61576 4.65819 4.73259 4.82914 4.85560 4.95097 4.97637 5.01105 5.04448 5.11991 5.13151 5.16721 5.19960 5.25570 5.27189 5.28350 5.37578 5.41258 5.48148 5.49720 5.59341 5.69462 5.73881 6.29396 6.41013 6.44771 7.06685 7.13929 7.18192 7.90775 8.32553 9.23107 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.002753 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.547180 B =10169.646738 C =11625.496066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.107 4.107 4 H 0.109 0.891 5 C -0.141 4.141 6 C 0.519 3.481 7 O -0.576 6.576 8 N -0.718 5.718 9 C 0.108 3.892 10 C 0.501 3.499 11 O -0.561 6.561 12 N -0.599 5.599 13 C 0.097 3.903 14 C -0.127 4.127 15 C -0.117 4.117 16 C -0.115 4.115 17 C 0.136 3.864 18 H 0.057 0.943 19 C 0.173 3.827 20 N -0.618 5.618 21 C 0.183 3.817 22 C -0.254 4.254 23 H 0.068 0.932 24 C -0.059 4.059 25 N -0.943 5.943 26 Si 0.969 3.031 27 H -0.282 1.282 28 H -0.272 1.272 29 H -0.296 1.296 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.051 0.949 49 H 0.030 0.970 50 H 0.053 0.947 51 H -0.009 1.009 52 H 0.027 0.973 53 H 0.024 0.976 54 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -23.103 6.255 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.128 4.128 4 H 0.127 0.873 5 C -0.198 4.198 6 C 0.307 3.693 7 O -0.456 6.456 8 N -0.372 5.372 9 C -0.019 4.019 10 C 0.289 3.711 11 O -0.440 6.440 12 N -0.332 5.332 13 C -0.024 4.024 14 C -0.165 4.165 15 C -0.154 4.154 16 C -0.154 4.154 17 C 0.030 3.970 18 H 0.075 0.925 19 C 0.047 3.953 20 N -0.342 5.342 21 C 0.038 3.962 22 C -0.384 4.384 23 H 0.086 0.914 24 C -0.253 4.253 25 N -0.591 5.591 26 Si 0.797 3.203 27 H -0.209 1.209 28 H -0.197 1.197 29 H -0.223 1.223 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.252 0.748 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.009 0.991 52 H 0.046 0.954 53 H 0.043 0.957 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.986 -23.133 6.452 24.344 hybrid contribution 0.129 1.511 -0.986 1.809 sum -3.857 -21.621 5.465 22.632 Atomic orbital electron populations 1.21809 0.93662 1.02520 1.02721 1.21345 0.96988 0.93423 1.02343 1.21402 0.89234 1.00099 1.02046 0.87328 1.21785 1.03441 0.99901 0.94704 1.21228 0.91495 0.81063 0.75481 1.90665 1.68910 1.36214 1.49793 1.45919 1.07847 1.19814 1.63619 1.21141 0.82972 0.94301 1.03508 1.20938 0.82413 0.90343 0.77398 1.90793 1.54975 1.43509 1.54764 1.48297 1.08318 1.10136 1.66432 1.22137 0.90438 0.87907 1.01933 1.21896 0.97485 0.97827 0.99283 1.21534 0.97501 0.94429 1.01943 1.21820 0.95545 0.99370 0.98633 1.21898 0.95952 0.81399 0.97707 0.92522 1.21214 0.92869 0.83048 0.98121 1.44410 1.68563 1.14459 1.06809 1.20562 0.95117 0.91574 0.88928 1.19497 1.42331 0.91420 0.85133 0.91391 1.25665 1.02611 0.96011 1.01033 1.70301 1.56038 1.01002 1.31749 0.85247 0.77996 0.76832 0.80188 1.20919 1.19698 1.22280 0.91990 0.91936 0.91584 0.92454 0.92072 0.89158 0.92461 0.92537 0.74822 0.87042 0.87452 0.89832 0.87265 0.87717 0.91737 0.91690 0.90808 0.92396 0.93071 0.95176 0.92902 0.99102 0.95445 0.95737 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 71.98 0.70 -0.91 16 2 C -0.10 -1.57 4.87 30.59 0.15 -1.42 16 3 C -0.11 -1.70 2.72 -11.54 -0.03 -1.73 16 4 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.14 -2.00 8.75 71.98 0.63 -1.37 16 6 C 0.52 11.44 6.91 87.66 0.61 12.04 16 7 O -0.58 -16.07 16.20 -3.06 -0.05 -16.12 16 8 N -0.72 -15.68 5.51 -466.78 -2.57 -18.25 16 9 C 0.11 2.26 4.57 85.63 0.39 2.66 16 10 C 0.50 14.05 7.60 87.66 0.67 14.72 16 11 O -0.56 -20.50 11.23 -3.02 -0.03 -20.53 16 12 N -0.60 -15.91 2.98 -794.93 -2.37 -18.28 16 13 C 0.10 1.64 6.32 86.36 0.55 2.19 16 14 C -0.13 -2.03 6.08 30.67 0.19 -1.84 16 15 C -0.12 -2.54 5.88 30.62 0.18 -2.36 16 16 C -0.12 -3.62 3.99 30.67 0.12 -3.50 16 17 C 0.14 4.75 3.21 44.97 0.14 4.89 16 18 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 19 C 0.17 7.79 3.62 86.38 0.31 8.11 16 20 N -0.62 -32.62 2.62 -726.93 -1.91 -34.53 16 21 C 0.18 9.55 7.77 127.77 0.99 10.54 16 22 C -0.25 -14.49 9.72 84.03 0.82 -13.68 16 23 H 0.07 3.81 7.87 -2.91 -0.02 3.78 16 24 C -0.06 -3.43 5.09 84.86 0.43 -3.00 16 25 N -0.94 -57.76 10.43 21.65 0.23 -57.54 16 26 Si 0.97 46.36 29.58 68.60 2.03 48.38 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.62 6.73 -2.39 -0.02 0.60 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.08 8.02 -2.39 -0.02 1.06 16 35 H 0.09 0.93 6.93 -2.39 -0.02 0.91 16 36 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 37 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 38 H 0.41 9.24 7.47 -92.71 -0.69 8.55 16 39 H 0.11 1.92 7.58 -2.39 -0.02 1.91 16 40 H 0.11 2.10 7.96 -2.39 -0.02 2.08 16 41 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.11 1.29 5.94 -2.39 -0.01 1.27 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 47 H 0.06 2.17 6.68 -2.39 -0.02 2.15 16 48 H 0.05 1.65 7.77 -2.39 -0.02 1.63 16 49 H 0.03 1.40 7.14 -2.39 -0.02 1.38 16 50 H 0.05 2.63 6.17 -2.39 -0.01 2.61 16 51 H -0.01 -0.54 7.50 -2.39 -0.02 -0.56 16 52 H 0.03 1.22 6.33 -2.39 -0.02 1.21 16 53 H 0.02 1.35 6.93 -2.39 -0.02 1.33 16 54 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -74.27 409.67 2.35 -71.92 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.18 Total: 19.61 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 6.84 Total: 25.33 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -6.62 Total: -128.59 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.08 Total: -36.66 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.27 2.35 -71.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158872538.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.015 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds