Wall clock time and date at job start Tue Mar 31 2020 23:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46798 * 2 1 4 4 H 1.08994 * 109.47257 * 305.00028 * 3 2 1 5 5 C 1.50699 * 109.46966 * 184.99470 * 3 2 1 6 6 O 1.21277 * 120.00311 * 240.00025 * 5 3 2 7 7 N 1.34781 * 119.99755 * 60.00174 * 5 3 2 8 8 C 1.46501 * 120.00231 * 179.97438 * 7 5 3 9 9 H 1.08997 * 109.46643 * 324.99984 * 8 7 5 10 10 C 1.53002 * 109.47013 * 84.99743 * 8 7 5 11 11 C 1.52996 * 109.47049 * 204.99988 * 8 7 5 12 12 C 1.52997 * 109.47131 * 65.00110 * 11 8 7 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 8 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 N 1.46496 * 109.47294 * 179.97438 * 14 13 12 16 16 C 1.36935 * 120.00627 * 179.97438 * 15 14 13 17 17 H 1.08012 * 119.99691 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00809 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99595 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00541 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47128 * 89.99754 * 20 18 16 22 22 H 1.48501 * 109.47310 * 209.99768 * 20 18 16 23 23 H 1.48501 * 109.46818 * 329.99523 * 20 18 16 24 24 N 1.46506 * 109.47076 * 64.99987 * 3 2 1 25 25 C 1.46765 * 124.34672 * 239.99495 * 24 3 2 26 26 C 1.54478 * 105.47262 * 197.01696 * 25 24 3 27 27 C 1.54631 * 101.76689 * 334.58701 * 26 25 24 28 28 C 1.34414 * 124.35187 * 59.69916 * 24 3 2 29 29 O 1.21290 * 124.94234 * 359.56547 * 28 24 3 30 30 H 1.08996 * 109.47249 * 300.00070 * 1 2 3 31 31 H 1.09002 * 109.46761 * 59.99715 * 1 2 3 32 32 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47249 * 239.99930 * 2 1 3 34 34 H 1.08997 * 109.46890 * 119.99816 * 2 1 3 35 35 H 0.97003 * 120.00102 * 359.97438 * 7 5 3 36 36 H 1.08992 * 109.47133 * 300.00613 * 10 8 7 37 37 H 1.09001 * 109.46843 * 60.00279 * 10 8 7 38 38 H 1.08998 * 109.46646 * 179.97438 * 10 8 7 39 39 H 1.08996 * 109.47452 * 305.00111 * 11 8 7 40 40 H 1.09001 * 109.46997 * 184.99684 * 11 8 7 41 41 H 1.09001 * 109.47502 * 60.00153 * 12 11 8 42 42 H 1.09001 * 109.47289 * 299.99950 * 12 11 8 43 43 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 44 44 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 45 45 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 46 46 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 47 47 H 0.97006 * 119.99755 * 359.97438 * 15 14 13 48 48 H 0.97000 * 120.00324 * 180.02562 * 19 18 16 49 49 H 1.08994 * 110.24549 * 316.01722 * 25 24 3 50 50 H 1.09000 * 110.24551 * 78.01938 * 25 24 3 51 51 H 1.09003 * 110.97102 * 92.70244 * 26 25 24 52 52 H 1.08997 * 110.96883 * 216.46842 * 26 25 24 53 53 H 1.08997 * 110.48944 * 143.47100 * 27 26 25 54 54 H 1.09000 * 110.48423 * 265.98815 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 8 4.2216 1.9437 0.7479 7 7 4.1298 0.8912 -1.2030 8 6 5.5899 0.8934 -1.3236 9 1 5.9884 1.8125 -0.8940 10 6 6.1652 -0.3108 -0.5754 11 6 5.9797 0.8100 -2.8008 12 6 5.5119 2.0745 -3.5239 13 6 5.9022 1.9913 -5.0010 14 6 5.4350 3.2561 -5.7240 15 7 5.8093 3.1768 -7.1381 16 6 5.4926 4.2019 -7.9889 17 1 4.9664 5.0690 -7.6174 18 6 5.8467 4.1266 -9.3289 19 7 6.4875 3.0698 -9.7817 20 14 5.4153 5.5254 -10.4893 21 1 6.5242 6.5128 -10.5081 22 1 5.2083 4.9874 -11.8578 23 1 4.1702 6.1879 -10.0243 24 7 1.6524 2.0975 1.2519 25 6 0.8075 3.2949 1.3329 26 6 1.0289 3.8602 2.7534 27 6 1.4530 2.5945 3.5339 28 6 2.0201 1.6758 2.4740 29 8 2.7085 0.7019 2.6948 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.5862 0.4916 -1.9000 36 1 5.8874 -0.2513 0.4768 37 1 5.7666 -1.2298 -1.0051 38 1 7.2515 -0.3093 -0.6656 39 1 5.5076 -0.0625 -3.2524 40 1 7.0628 0.7222 -2.8863 41 1 5.9840 2.9471 -3.0724 42 1 4.4288 2.1624 -3.4384 43 1 6.9854 1.9038 -5.0861 44 1 5.4305 1.1188 -5.4528 45 1 4.3519 3.3442 -5.6389 46 1 5.9071 4.1285 -5.2720 47 1 6.2816 2.3979 -7.4718 48 1 6.7354 3.0172 -10.7180 49 1 1.1151 4.0249 0.5842 50 1 -0.2398 3.0277 1.1923 51 1 1.8244 4.6054 2.7570 52 1 0.1053 4.2756 3.1562 53 1 2.2128 2.8404 4.2757 54 1 0.5888 2.1340 4.0125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176668220.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:50 Heat of formation + Delta-G solvation = -106.391265 kcal Electronic energy + Delta-G solvation = -30147.010680 eV Core-core repulsion = 26117.153612 eV Total energy + Delta-G solvation = -4029.857068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89277 -40.38837 -38.05890 -37.38946 -36.80889 -35.91552 -34.74515 -32.93754 -31.91861 -31.65448 -28.84171 -28.45540 -28.06581 -25.93323 -23.88697 -23.31407 -22.73101 -22.50648 -22.02098 -21.54926 -20.05337 -19.12174 -18.32481 -18.03293 -17.44800 -17.00957 -16.68508 -16.23711 -16.16555 -15.71149 -15.41656 -15.36134 -15.21734 -15.10762 -14.68380 -14.55847 -14.36148 -14.21688 -14.07596 -13.87400 -13.58422 -13.36493 -13.23637 -13.04642 -12.97953 -12.89381 -12.85040 -12.47692 -12.42813 -12.28112 -12.15559 -12.14991 -11.98304 -11.88723 -11.83576 -11.83031 -11.49490 -11.40830 -10.95795 -10.93800 -10.64997 -10.08008 -9.66155 -9.01431 -7.96407 -5.25778 1.46792 1.49097 1.54749 1.57565 1.61511 1.94971 2.35378 2.55460 3.36918 3.42416 3.56808 3.64108 3.74258 3.84467 3.96333 4.02224 4.04246 4.07695 4.13603 4.20805 4.31859 4.35638 4.40057 4.48877 4.58713 4.62568 4.66961 4.67890 4.75148 4.79179 4.86073 4.88095 4.90547 4.96969 5.00415 5.03243 5.07996 5.10747 5.13652 5.22784 5.23763 5.28574 5.33978 5.44703 5.45828 5.52767 5.54888 5.60292 6.18331 6.26444 6.54293 7.19758 7.30969 7.32008 8.08941 8.32018 9.27218 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.001981 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.665726 B =14127.736332 C =15038.134719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.139 3.861 4 H 0.146 0.854 5 C 0.498 3.502 6 O -0.571 6.571 7 N -0.710 5.710 8 C 0.148 3.852 9 H 0.063 0.937 10 C -0.156 4.156 11 C -0.115 4.115 12 C -0.103 4.103 13 C -0.113 4.113 14 C 0.149 3.851 15 N -0.750 5.750 16 C -0.249 4.249 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.976 3.024 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.268 1.268 24 N -0.605 5.605 25 C 0.097 3.903 26 C -0.121 4.121 27 C -0.152 4.152 28 C 0.509 3.491 29 O -0.576 6.576 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.413 0.587 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.012 0.988 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.075 0.925 52 H 0.123 0.877 53 H 0.093 0.907 54 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 -4.591 26.493 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.032 3.968 4 H 0.163 0.837 5 C 0.283 3.717 6 O -0.449 6.449 7 N -0.364 5.364 8 C 0.043 3.957 9 H 0.081 0.919 10 C -0.214 4.214 11 C -0.153 4.153 12 C -0.141 4.141 13 C -0.150 4.150 14 C 0.022 3.978 15 N -0.392 5.392 16 C -0.380 4.380 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.193 1.193 24 N -0.338 5.338 25 C -0.025 4.025 26 C -0.159 4.159 27 C -0.192 4.192 28 C 0.298 3.702 29 O -0.455 6.455 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.250 0.750 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.030 0.970 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.119 0.881 51 H 0.093 0.907 52 H 0.141 0.859 53 H 0.112 0.888 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.525 -4.583 27.128 31.591 hybrid contribution 0.436 0.163 -1.155 1.245 sum -15.089 -4.421 25.973 30.362 Atomic orbital electron populations 1.21677 0.92831 1.02587 1.02633 1.21844 0.98522 0.93172 1.03289 1.21082 0.90051 0.96908 0.88734 0.83685 1.21419 0.91687 0.77138 0.81409 1.90690 1.66305 1.46851 1.41022 1.45992 1.07746 1.59800 1.22852 1.20885 0.79851 0.98684 0.96265 0.91909 1.22093 1.01823 0.98303 0.99188 1.21826 1.02777 0.98615 0.92043 1.21404 1.01561 0.97962 0.93146 1.21599 1.00791 0.97089 0.95560 1.20853 0.96705 0.96631 0.83568 1.42647 1.69586 1.21787 1.05228 1.19656 1.29612 0.98224 0.90548 0.90777 1.25630 1.01920 1.00618 0.98890 1.69819 1.46708 1.30842 1.14690 0.85100 0.78074 0.78402 0.77949 1.21419 1.21950 1.19275 1.48109 1.50960 1.30164 1.04615 1.22441 0.95395 0.85432 0.99205 1.22619 1.04353 0.95766 0.93136 1.22357 1.03392 0.96360 0.97104 1.21536 0.78257 0.84701 0.85671 1.90661 1.39676 1.30585 1.84612 0.93059 0.90478 0.91964 0.88755 0.93218 0.74959 0.95048 0.91101 0.90601 0.89583 0.89783 0.92838 0.91143 0.92667 0.91713 0.96101 0.97033 0.79450 0.93925 0.89618 0.88097 0.90652 0.85886 0.88813 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.80 71.98 0.71 -0.67 16 2 C -0.13 -1.87 5.30 30.60 0.16 -1.71 16 3 C 0.14 2.24 2.67 44.24 0.12 2.36 16 4 H 0.15 1.38 8.07 -2.39 -0.02 1.36 16 5 C 0.50 11.64 6.82 87.66 0.60 12.24 16 6 O -0.57 -19.02 14.58 10.51 0.15 -18.87 16 7 N -0.71 -13.05 4.39 -442.54 -1.94 -14.99 16 8 C 0.15 3.02 2.57 44.99 0.12 3.13 16 9 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 10 C -0.16 -3.15 9.48 71.98 0.68 -2.47 16 11 C -0.11 -2.08 4.75 30.59 0.15 -1.94 16 12 C -0.10 -2.33 5.10 30.60 0.16 -2.17 16 13 C -0.11 -3.39 5.33 30.60 0.16 -3.23 16 14 C 0.15 5.94 6.26 86.38 0.54 6.48 16 15 N -0.75 -38.91 5.60 -343.46 -1.92 -40.84 16 16 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 17 H 0.07 4.04 7.83 -2.90 -0.02 4.02 16 18 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 19 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 20 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 N -0.61 -10.21 2.07 -798.19 -1.66 -11.86 16 25 C 0.10 0.81 7.30 86.83 0.63 1.44 16 26 C -0.12 -0.87 7.18 31.65 0.23 -0.64 16 27 C -0.15 -2.00 6.86 30.59 0.21 -1.79 16 28 C 0.51 11.67 6.68 87.90 0.59 12.26 16 29 O -0.58 -19.14 15.36 10.47 0.16 -18.98 16 30 H 0.05 0.55 7.75 -2.39 -0.02 0.53 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.00 7.43 -2.39 -0.02 0.99 16 34 H 0.05 1.11 6.60 -2.39 -0.02 1.09 16 35 H 0.41 5.12 7.96 -92.71 -0.74 4.39 16 36 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.46 7.75 -2.39 -0.02 1.44 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 47 H 0.37 20.45 7.67 -92.70 -0.71 19.74 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 50 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 53 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -84.06 431.06 2.87 -81.19 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.58 Total: 29.72 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.35 Total: 5.92 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -5.24 Total: -127.19 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: 0.31 Total: -37.85 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -84.06 2.87 -81.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176668220.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.205 kcal (2) G-P(sol) polarization free energy of solvation -84.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds