Wall clock time and date at job start Wed Apr 1 2020 00:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46929 * 2 1 4 4 N 1.46505 * 109.47131 * 119.99804 * 2 1 3 5 5 C 1.46759 * 124.35149 * 120.00099 * 4 2 1 6 6 C 1.54477 * 105.47350 * 162.96097 * 5 4 2 7 7 H 1.09001 * 110.96729 * 143.57074 * 6 5 4 8 8 C 1.50696 * 110.97248 * 267.29775 * 6 5 4 9 9 O 1.21284 * 120.00109 * 356.91144 * 8 6 5 10 10 N 1.34777 * 120.00141 * 176.91420 * 8 6 5 11 11 C 1.46506 * 119.99880 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46691 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46997 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47481 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47558 * 180.02562 * 16 15 14 18 18 C 1.36934 * 120.00556 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99747 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00392 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99918 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00220 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46717 * 59.99705 * 22 20 18 24 24 H 1.48497 * 109.46887 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46828 * 299.99706 * 22 20 18 26 26 C 1.54624 * 101.79894 * 25.43916 * 6 5 4 27 27 C 1.34424 * 124.34635 * 299.97852 * 4 2 1 28 28 O 1.21275 * 124.94470 * 0.38760 * 27 4 2 29 29 H 1.08996 * 109.47721 * 299.99868 * 1 2 3 30 30 H 1.08997 * 109.47296 * 60.00568 * 1 2 3 31 31 H 1.09004 * 109.46796 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47353 * 239.99569 * 2 1 3 33 33 H 1.09003 * 109.47409 * 179.97438 * 3 2 1 34 34 H 1.09009 * 109.47327 * 299.99695 * 3 2 1 35 35 H 1.09003 * 109.47455 * 59.99631 * 3 2 1 36 36 H 1.09003 * 110.24588 * 43.95955 * 5 4 2 37 37 H 1.08999 * 110.24888 * 281.96502 * 5 4 2 38 38 H 0.96999 * 120.00043 * 359.97438 * 10 8 6 39 39 H 1.08993 * 109.47068 * 59.99359 * 11 10 8 40 40 H 1.09000 * 109.46872 * 299.99570 * 11 10 8 41 41 H 1.08993 * 109.47839 * 59.99891 * 12 11 10 42 42 H 1.09000 * 109.47160 * 299.99453 * 12 11 10 43 43 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 44 44 H 1.09001 * 109.46801 * 59.99811 * 13 12 11 45 45 H 1.09000 * 109.47486 * 299.99829 * 14 13 12 46 46 H 1.09001 * 109.47362 * 60.00551 * 14 13 12 47 47 H 1.09000 * 109.46866 * 300.00212 * 15 14 13 48 48 H 1.08996 * 109.47261 * 59.99820 * 15 14 13 49 49 H 1.09004 * 109.46672 * 300.00239 * 16 15 14 50 50 H 1.08996 * 109.47340 * 59.99477 * 16 15 14 51 51 H 0.96999 * 119.99691 * 359.97438 * 17 16 15 52 52 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 53 53 H 1.08997 * 110.49266 * 93.85647 * 26 6 5 54 54 H 1.09003 * 110.48756 * 216.50758 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1729 6 6 3.4728 -1.9918 2.5896 7 1 3.5573 -3.0323 2.9030 8 6 4.8108 -1.3015 2.6545 9 8 5.2903 -0.8129 1.6533 10 7 5.4746 -1.2271 3.8250 11 6 6.7751 -0.5555 3.8882 12 6 7.3086 -0.6109 5.3211 13 6 8.6671 0.0899 5.3869 14 6 9.2003 0.0350 6.8199 15 6 10.5591 0.7352 6.8856 16 6 11.0927 0.6798 8.3184 17 7 12.3934 1.3508 8.3815 18 6 13.0680 1.4264 9.5708 19 1 12.6409 0.9916 10.4624 20 6 14.3007 2.0617 9.6304 21 7 14.8214 2.5911 8.5437 22 14 15.2206 2.1654 11.2530 23 1 15.4987 0.7949 11.7527 24 1 16.5022 2.8874 11.0501 25 1 14.3922 2.8957 12.2458 26 6 2.4212 -1.2417 3.4396 27 6 1.7483 -0.3079 2.4562 28 8 1.0654 0.6469 2.7610 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8900 36 1 3.6562 -1.7772 0.4308 37 1 2.2646 -2.7715 0.9549 38 1 5.0910 -1.6175 4.6258 39 1 6.6621 0.4847 3.5829 40 1 7.4754 -1.0563 3.2197 41 1 7.4216 -1.6510 5.6268 42 1 6.6082 -0.1099 5.9892 43 1 9.3674 -0.4115 4.7188 44 1 8.5545 1.1300 5.0810 45 1 8.5000 0.5367 7.4877 46 1 9.3129 -1.0051 7.1261 47 1 11.2593 0.2332 6.2179 48 1 10.4471 1.7752 6.5792 49 1 10.3926 1.1816 8.9864 50 1 11.2048 -0.3603 8.6245 51 1 12.7772 1.7410 7.5807 52 1 15.6827 3.0354 8.5854 53 1 1.6979 -1.9421 3.8570 54 1 2.9068 -0.6746 4.2338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178625689.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:10 Heat of formation + Delta-G solvation = -114.520590 kcal Electronic energy + Delta-G solvation = -28528.241061 eV Core-core repulsion = 24498.031479 eV Total energy + Delta-G solvation = -4030.209582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.00472 -40.30766 -37.95787 -37.41637 -36.72805 -35.93355 -35.30671 -33.52388 -31.84492 -30.94764 -28.73632 -28.25826 -28.17645 -25.95299 -24.47610 -23.44278 -23.27620 -22.20229 -21.97440 -20.97108 -19.93803 -19.12413 -18.57215 -17.74515 -17.08529 -17.07539 -16.67914 -16.62509 -16.28738 -16.11654 -15.38402 -15.35827 -15.24893 -15.19369 -14.85980 -14.70886 -14.54953 -14.20568 -13.93651 -13.70157 -13.55549 -13.41477 -13.19224 -13.03297 -12.93604 -12.87749 -12.68790 -12.58727 -12.57741 -12.39339 -12.26443 -12.20775 -12.11893 -12.00587 -11.80615 -11.79703 -11.46769 -11.34593 -10.92763 -10.86717 -10.67045 -10.11073 -9.71360 -9.01900 -7.96435 -5.26240 1.46543 1.50470 1.53574 1.56771 1.57304 2.00712 2.16353 2.55752 3.26575 3.33911 3.36907 3.65954 3.74383 3.84970 3.96410 4.01797 4.03891 4.06518 4.24254 4.24761 4.30086 4.33436 4.38501 4.58524 4.59226 4.63150 4.64406 4.67504 4.70348 4.78689 4.80464 4.83723 4.85435 4.86436 4.90581 4.98136 4.99157 5.06784 5.16108 5.16608 5.25521 5.29080 5.35346 5.44505 5.47741 5.53549 5.56450 5.66041 6.17428 6.25989 6.53497 7.15623 7.22985 7.31429 8.08658 8.31458 9.27179 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.001256 C = 0.001250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.586349 B =22289.258042 C =22389.034293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.163 4.163 4 N -0.613 5.613 5 C 0.110 3.890 6 C -0.112 4.112 7 H 0.174 0.826 8 C 0.510 3.490 9 O -0.580 6.580 10 N -0.715 5.715 11 C 0.121 3.879 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.253 4.253 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.277 1.277 26 C -0.137 4.137 27 C 0.499 3.501 28 O -0.577 6.577 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.419 0.581 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.018 0.982 50 H 0.021 0.979 51 H 0.372 0.628 52 H 0.252 0.748 53 H 0.151 0.849 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.180 -16.447 -17.690 41.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 C -0.221 4.221 4 N -0.346 5.346 5 C -0.012 4.012 6 C -0.133 4.133 7 H 0.192 0.808 8 C 0.297 3.703 9 O -0.459 6.459 10 N -0.368 5.368 11 C -0.003 4.003 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.022 3.978 17 N -0.394 5.394 18 C -0.385 4.385 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.203 1.203 26 C -0.177 4.177 27 C 0.288 3.712 28 O -0.458 6.458 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.256 0.744 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.036 0.964 50 H 0.038 0.962 51 H 0.204 0.796 52 H 0.061 0.939 53 H 0.169 0.831 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -33.184 -15.611 -18.137 40.913 hybrid contribution 1.080 0.774 0.750 1.526 sum -32.104 -14.838 -17.387 39.410 Atomic orbital electron populations 1.22098 0.94110 1.02755 1.02646 1.21074 0.94723 0.92553 0.87163 1.22120 1.00515 0.96899 1.02577 1.48580 1.50669 1.29391 1.05973 1.22260 0.94193 0.87882 0.96863 1.22408 0.89910 1.03929 0.97047 0.80829 1.20948 0.87213 0.79251 0.82867 1.90723 1.70076 1.48695 1.36455 1.45902 1.21027 1.58262 1.11565 1.21300 0.84120 0.96700 0.98203 1.21689 0.96618 1.02664 0.94521 1.21456 0.96416 1.00844 0.96530 1.21417 0.94601 1.00927 0.97174 1.21645 0.97773 1.00619 0.95499 1.20879 0.85946 0.94739 0.96267 1.42662 1.20082 1.68038 1.08628 1.19665 1.00166 1.29396 0.89229 0.90596 1.25639 0.99028 1.01388 1.00840 1.69822 1.19452 1.43903 1.29019 0.85154 0.77445 0.77826 0.78997 1.20150 1.21980 1.20258 1.22457 0.98919 0.99164 0.97209 1.21545 0.79928 0.84687 0.85060 1.90686 1.41912 1.30859 1.82309 0.93873 0.89989 0.91338 0.87188 0.93802 0.89709 0.94024 0.89882 0.86530 0.74383 0.93443 0.92225 0.89467 0.90229 0.91832 0.92410 0.91377 0.90983 0.92687 0.92968 0.96377 0.96151 0.79616 0.93937 0.83145 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.20 71.98 0.66 -1.26 16 2 C 0.15 1.95 3.47 44.99 0.16 2.11 16 3 C -0.16 -2.83 9.20 71.98 0.66 -2.17 16 4 N -0.61 -8.38 2.83 -793.91 -2.25 -10.63 16 5 C 0.11 0.80 6.66 86.83 0.58 1.38 16 6 C -0.11 -0.55 3.54 -10.49 -0.04 -0.58 16 7 H 0.17 -0.71 8.14 -2.39 -0.02 -0.73 16 8 C 0.51 7.00 7.12 87.66 0.62 7.63 16 9 O -0.58 -13.79 15.51 -3.04 -0.05 -13.83 16 10 N -0.72 -7.33 5.37 -463.06 -2.49 -9.82 16 11 C 0.12 1.77 5.67 86.38 0.49 2.26 16 12 C -0.12 -1.41 5.33 30.60 0.16 -1.25 16 13 C -0.11 -2.05 5.21 30.60 0.16 -1.89 16 14 C -0.10 -2.27 5.21 30.60 0.16 -2.11 16 15 C -0.12 -3.73 5.33 30.59 0.16 -3.57 16 16 C 0.15 6.04 6.26 86.38 0.54 6.58 16 17 N -0.75 -39.99 5.60 -343.48 -1.92 -41.91 16 18 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 22 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.14 -0.94 6.40 30.62 0.20 -0.74 16 27 C 0.50 8.68 7.41 87.93 0.65 9.33 16 28 O -0.58 -15.40 15.12 -3.01 -0.05 -15.44 16 29 H 0.04 0.79 6.78 -2.39 -0.02 0.78 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.97 8.07 -2.39 -0.02 0.95 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.04 0.96 6.80 -2.39 -0.02 0.94 16 36 H 0.08 0.92 6.98 -2.39 -0.02 0.90 16 37 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.42 1.36 8.47 -92.71 -0.79 0.58 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 52 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 53 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 54 H 0.11 0.77 7.75 -2.39 -0.02 0.75 16 Total: -1.00 -84.12 433.22 1.41 -82.72 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.63 Total: 22.91 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 6.48 Total: -2.12 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -6.38 Total: -122.94 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.09 Total: -29.28 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -84.12 1.41 -82.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178625689.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.805 kcal (2) G-P(sol) polarization free energy of solvation -84.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds