Wall clock time and date at job start Tue Mar 31 2020 23:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 O 1.21277 * 120.00147 * 120.00097 * 5 3 2 7 7 N 1.34779 * 120.00168 * 299.99481 * 5 3 2 8 8 C 1.46493 * 120.00206 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46994 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46897 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47071 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47251 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47251 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.36931 * 120.00392 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00154 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00061 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00151 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47218 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47335 * 119.99918 * 19 17 15 22 22 H 1.48501 * 109.47201 * 240.00025 * 19 17 15 23 23 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 24 24 C 1.46771 * 124.34538 * 120.00064 * 23 3 2 25 25 C 1.54472 * 105.47458 * 197.01477 * 24 23 3 26 26 C 1.54637 * 101.76629 * 334.58618 * 25 24 23 27 27 C 1.34417 * 124.35280 * 299.70096 * 23 3 2 28 28 O 1.21280 * 124.94200 * 359.56966 * 27 23 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.97002 * 119.99606 * 0.02562 * 7 5 3 35 35 H 1.08997 * 109.47341 * 299.99863 * 8 7 5 36 36 H 1.09002 * 109.47205 * 60.00240 * 8 7 5 37 37 H 1.09001 * 109.47096 * 299.99713 * 9 8 7 38 38 H 1.08992 * 109.47256 * 59.99887 * 9 8 7 39 39 H 1.08997 * 109.47219 * 299.99345 * 10 9 8 40 40 H 1.09002 * 109.47423 * 59.99781 * 10 9 8 41 41 H 1.08998 * 109.47528 * 300.00171 * 11 10 9 42 42 H 1.09002 * 109.46911 * 59.99791 * 11 10 9 43 43 H 1.08997 * 109.47394 * 299.99886 * 12 11 10 44 44 H 1.09002 * 109.47069 * 60.00212 * 12 11 10 45 45 H 1.08998 * 109.47528 * 300.00495 * 13 12 11 46 46 H 1.09002 * 109.46911 * 60.00115 * 13 12 11 47 47 H 0.97002 * 119.99874 * 359.97438 * 14 13 12 48 48 H 0.97006 * 120.00469 * 180.02562 * 18 17 15 49 49 H 1.09001 * 110.24687 * 316.01715 * 24 23 3 50 50 H 1.09001 * 110.24326 * 78.01876 * 24 23 3 51 51 H 1.09006 * 110.96955 * 92.70121 * 25 24 23 52 52 H 1.08998 * 110.97741 * 216.46671 * 25 24 23 53 53 H 1.08997 * 110.48583 * 143.47259 * 26 25 24 54 54 H 1.08994 * 110.48620 * 265.98811 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 8 4.2216 1.9436 -0.7477 7 7 4.1298 0.8912 1.2032 8 6 5.5897 0.8935 1.3238 9 6 5.9945 0.2088 2.6309 10 6 7.5193 0.2117 2.7572 11 6 7.9240 -0.4723 4.0645 12 6 9.4488 -0.4700 4.1905 13 6 9.8536 -1.1546 5.4976 14 7 11.3136 -1.1519 5.6186 15 6 11.9109 -1.7146 6.7147 16 1 11.3056 -2.1602 7.4904 17 6 13.2942 -1.7115 6.8296 18 7 14.0318 -1.1681 5.8847 19 14 14.1090 -2.4787 8.3253 20 1 13.0664 -3.0169 9.2355 21 1 15.0042 -3.5808 7.8907 22 1 14.9041 -1.4475 9.0393 23 7 1.6525 2.0974 -1.2519 24 6 0.8076 3.2948 -1.3330 25 6 0.3194 3.3563 -2.7973 26 6 1.4368 2.5825 -3.5349 27 6 2.0298 1.6823 -2.4734 28 8 2.7400 0.7240 -2.6928 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.5861 0.4917 1.9001 35 1 6.0247 0.3547 0.4821 36 1 5.9527 1.9213 1.3240 37 1 5.5595 0.7473 3.4729 38 1 5.6315 -0.8189 2.6303 39 1 7.9546 -0.3265 1.9153 40 1 7.8819 1.2397 2.7580 41 1 7.4887 0.0662 4.9063 42 1 7.5614 -1.5002 4.0641 43 1 9.8838 -1.0088 3.3488 44 1 9.8118 0.5578 4.1908 45 1 9.4186 -0.6163 6.3396 46 1 9.4907 -2.1824 5.4969 47 1 11.8572 -0.7520 4.9218 48 1 14.9986 -1.1663 5.9647 49 1 -0.0417 3.2038 -0.6558 50 1 1.3897 4.1842 -1.0918 51 1 -0.6418 2.8546 -2.9095 52 1 0.2628 4.3872 -3.1468 53 1 1.0179 1.9918 -4.3495 54 1 2.1918 3.2714 -3.9135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180316791.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:49 Heat of formation + Delta-G solvation = -111.985103 kcal Electronic energy + Delta-G solvation = -28739.516646 eV Core-core repulsion = 24709.417011 eV Total energy + Delta-G solvation = -4030.099635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88724 -40.25114 -37.94091 -37.42914 -36.76214 -35.92039 -35.26573 -33.49304 -31.95578 -31.56227 -28.99189 -28.43030 -27.55127 -25.66730 -23.77333 -23.29493 -22.71692 -22.29105 -22.13527 -21.68441 -20.02174 -19.13083 -18.47629 -17.98010 -17.09965 -17.02906 -16.76724 -16.61142 -16.40308 -16.10598 -15.40920 -15.36872 -15.29543 -15.20350 -14.98402 -14.59952 -14.31420 -14.15168 -13.93630 -13.80826 -13.63705 -13.44997 -13.35019 -13.05825 -13.02317 -12.94054 -12.68211 -12.43112 -12.40510 -12.15534 -12.12692 -12.02622 -12.01343 -11.83417 -11.81714 -11.80137 -11.48657 -11.36996 -10.98876 -10.95742 -10.68133 -10.15537 -9.68217 -9.02821 -7.97511 -5.27302 1.45963 1.47625 1.52599 1.57946 1.58390 1.88628 2.31790 2.54755 3.36167 3.41907 3.62056 3.69082 3.72709 3.83233 3.94934 3.98863 4.00000 4.06570 4.21039 4.22942 4.27202 4.32030 4.35178 4.48176 4.55890 4.60983 4.68464 4.68863 4.75830 4.77214 4.83182 4.87247 4.95444 4.96679 5.03570 5.04735 5.10099 5.12663 5.15256 5.23449 5.26517 5.32666 5.34793 5.40816 5.46707 5.51673 5.54391 5.57651 6.16095 6.25181 6.49011 7.16354 7.27998 7.30464 8.07507 8.30335 9.26613 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033071 B = 0.001282 C = 0.001260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.447329 B =21830.854382 C =22219.587021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.143 3.857 4 H 0.155 0.845 5 C 0.491 3.509 6 O -0.575 6.575 7 N -0.715 5.715 8 C 0.123 3.877 9 C -0.115 4.115 10 C -0.114 4.114 11 C -0.102 4.102 12 C -0.118 4.118 13 C 0.148 3.852 14 N -0.752 5.752 15 C -0.250 4.250 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.978 3.022 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.291 1.291 23 N -0.606 5.606 24 C 0.096 3.904 25 C -0.116 4.116 26 C -0.155 4.155 27 C 0.506 3.494 28 O -0.578 6.578 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.417 0.583 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.372 0.628 48 H 0.252 0.748 49 H 0.111 0.889 50 H 0.072 0.928 51 H 0.099 0.901 52 H 0.113 0.887 53 H 0.105 0.895 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.979 10.794 -14.456 44.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.036 3.964 4 H 0.172 0.828 5 C 0.277 3.723 6 O -0.453 6.453 7 N -0.368 5.368 8 C -0.001 4.001 9 C -0.152 4.152 10 C -0.153 4.153 11 C -0.140 4.140 12 C -0.156 4.156 13 C 0.022 3.978 14 N -0.394 5.394 15 C -0.382 4.382 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.219 1.219 22 H -0.218 1.218 23 N -0.339 5.339 24 C -0.025 4.025 25 C -0.154 4.154 26 C -0.195 4.195 27 C 0.295 3.705 28 O -0.457 6.457 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.130 0.870 50 H 0.091 0.909 51 H 0.117 0.883 52 H 0.131 0.869 53 H 0.124 0.876 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -40.147 10.543 -14.946 44.117 hybrid contribution 1.565 -0.524 0.452 1.711 sum -38.582 10.019 -14.494 42.415 Atomic orbital electron populations 1.21673 0.92535 1.02592 1.02845 1.21866 0.98754 0.93192 1.03204 1.21078 0.89418 0.96934 0.88928 0.82751 1.21625 0.92103 0.77324 0.81251 1.90711 1.66530 1.46867 1.41238 1.45861 1.07871 1.60008 1.23101 1.21277 0.79927 1.00531 0.98381 1.21680 0.95858 1.01826 0.95869 1.21456 0.95286 1.01054 0.97456 1.21406 0.93168 1.01484 0.97952 1.21645 0.97453 1.00038 0.96427 1.20877 0.83401 0.97235 0.96277 1.42685 1.02358 1.70454 1.23946 1.19742 0.90483 1.29108 0.98820 0.90506 1.25651 0.96909 1.02835 1.01651 1.69839 1.04476 1.51971 1.36001 0.85008 0.78284 0.77306 0.78765 1.18814 1.21900 1.21832 1.48136 1.51167 1.30011 1.04574 1.22444 0.94523 0.85917 0.99591 1.22619 0.97627 1.02860 0.92251 1.22368 1.00471 0.99182 0.97514 1.21583 0.78737 0.84206 0.85931 1.90674 1.39095 1.31209 1.84731 0.92160 0.93095 0.89927 0.88514 0.93796 0.74497 0.93893 0.92622 0.89329 0.90065 0.92488 0.91935 0.90875 0.91256 0.92997 0.92730 0.96083 0.96274 0.79637 0.93948 0.87044 0.90923 0.88281 0.86884 0.87641 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.80 71.98 0.71 -0.16 16 2 C -0.13 -1.49 5.31 30.60 0.16 -1.33 16 3 C 0.14 1.77 2.67 44.25 0.12 1.89 16 4 H 0.16 0.58 8.07 -2.39 -0.02 0.56 16 5 C 0.49 10.33 6.85 87.66 0.60 10.93 16 6 O -0.58 -18.61 14.84 11.93 0.18 -18.44 16 7 N -0.71 -10.98 5.42 -463.07 -2.51 -13.49 16 8 C 0.12 2.32 5.67 86.38 0.49 2.81 16 9 C -0.11 -1.67 5.33 30.60 0.16 -1.50 16 10 C -0.11 -2.28 5.21 30.59 0.16 -2.12 16 11 C -0.10 -2.36 5.21 30.59 0.16 -2.21 16 12 C -0.12 -3.86 5.33 30.59 0.16 -3.70 16 13 C 0.15 6.15 6.26 86.38 0.54 6.69 16 14 N -0.75 -40.43 5.60 -343.46 -1.92 -42.35 16 15 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 17 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 18 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 19 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 N -0.61 -8.47 2.08 -798.18 -1.66 -10.13 16 24 C 0.10 0.45 7.30 86.83 0.63 1.09 16 25 C -0.12 -0.31 7.18 31.65 0.23 -0.09 16 26 C -0.16 -1.79 6.86 30.59 0.21 -1.58 16 27 C 0.51 10.86 6.69 87.90 0.59 11.44 16 28 O -0.58 -18.90 15.33 11.92 0.18 -18.71 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.38 7.75 -2.39 -0.02 0.36 16 31 H 0.08 0.11 8.14 -2.38 -0.02 0.09 16 32 H 0.10 0.68 7.43 -2.39 -0.02 0.66 16 33 H 0.04 0.90 6.67 -2.39 -0.02 0.88 16 34 H 0.42 3.13 7.83 -92.71 -0.73 2.41 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.37 21.25 7.67 -92.71 -0.71 20.54 16 48 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 49 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 52 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 53 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 54 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -88.97 432.75 2.23 -86.74 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.57 Total: 24.14 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.23 Total: 4.28 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.81 Total: -127.13 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: 0.36 Total: -37.15 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -88.97 2.23 -86.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180316791.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.250 kcal (2) G-P(sol) polarization free energy of solvation -88.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds