Wall clock time and date at job start Tue Mar 31 2020 23:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47521 * 2 1 4 4 H 1.08993 * 109.46773 * 305.00488 * 3 2 1 5 5 C 1.53001 * 109.46768 * 64.99988 * 3 2 1 6 6 C 1.50698 * 109.47004 * 184.99803 * 3 2 1 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 3 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 O 1.21283 * 120.00006 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.48144 * 127.83755 * 359.67457 * 12 10 9 14 14 C 1.54794 * 104.41820 * 140.37458 * 13 12 10 15 15 H 1.08999 * 110.19890 * 142.94585 * 14 13 12 16 16 C 1.53008 * 110.60879 * 265.17728 * 14 13 12 17 17 C 1.54278 * 104.91967 * 24.16330 * 14 13 12 18 18 C 1.52999 * 110.34148 * 240.93848 * 17 14 13 19 19 C 1.52996 * 110.34353 * 118.68248 * 17 14 13 20 20 N 1.46499 * 109.47260 * 183.00615 * 19 17 14 21 21 C 1.36937 * 119.99862 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00314 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99652 * 180.02562 * 21 20 19 24 24 N 1.31625 * 119.99838 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00287 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47473 * 90.00037 * 25 23 21 27 27 H 1.48503 * 109.47019 * 210.00388 * 25 23 21 28 28 H 1.48502 * 109.47210 * 329.99765 * 25 23 21 29 29 C 1.48149 * 127.83798 * 180.02562 * 12 10 9 30 30 H 1.08994 * 109.47669 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47105 * 300.00161 * 1 2 3 32 32 H 1.08994 * 109.47225 * 59.99800 * 1 2 3 33 33 H 1.09000 * 109.46835 * 239.99286 * 2 1 3 34 34 H 1.09003 * 109.46635 * 120.00163 * 2 1 3 35 35 H 1.09001 * 109.47406 * 60.00127 * 5 3 2 36 36 H 1.09001 * 109.47038 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47475 * 299.99715 * 5 3 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 8 6 3 39 39 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 40 40 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 41 41 H 1.09005 * 110.41128 * 259.20303 * 13 12 10 42 42 H 1.08995 * 110.40951 * 21.63009 * 13 12 10 43 43 H 1.08995 * 109.46765 * 175.64984 * 16 14 13 44 44 H 1.08995 * 109.46793 * 295.64588 * 16 14 13 45 45 H 1.08996 * 109.47154 * 55.65139 * 16 14 13 46 46 H 1.08997 * 109.47279 * 176.98795 * 18 17 14 47 47 H 1.08995 * 109.47585 * 296.99071 * 18 17 14 48 48 H 1.09001 * 109.46919 * 56.99386 * 18 17 14 49 49 H 1.09000 * 109.47189 * 303.00930 * 19 17 14 50 50 H 1.09003 * 109.47294 * 63.00516 * 19 17 14 51 51 H 0.96998 * 120.00332 * 0.02562 * 20 19 17 52 52 H 0.97001 * 120.00079 * 179.97438 * 24 23 21 53 53 H 1.08997 * 110.40499 * 338.35925 * 29 12 10 54 54 H 1.08992 * 110.40896 * 100.67946 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4441 -0.1238 7 8 4.1450 0.3950 -0.2046 8 7 4.2149 2.6116 -0.1458 9 6 5.6754 2.6131 -0.2601 10 6 6.1783 4.0338 -0.2551 11 8 5.3938 4.9544 -0.1654 12 7 7.4996 4.2813 -0.3513 13 6 8.6025 3.2985 -0.4623 14 6 9.5812 3.9309 -1.4813 15 1 10.6114 3.7215 -1.1935 16 6 9.3061 3.4034 -2.8910 17 6 9.3023 5.4467 -1.4119 18 6 8.8324 5.9639 -2.7730 19 6 10.5561 6.1981 -0.9601 20 7 10.2506 7.6251 -0.8316 21 6 11.2259 8.5012 -0.4364 22 1 12.2202 8.1403 -0.2190 23 6 10.9362 9.8533 -0.3142 24 7 11.8739 10.6956 0.0652 25 14 9.2162 10.4777 -0.6895 26 1 8.3964 10.4443 0.5481 27 1 9.2949 11.8723 -1.1938 28 1 8.5899 9.6129 -1.7216 29 6 8.1791 5.5977 -0.3630 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8932 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.0699 1.5874 2.1492 36 1 1.9983 3.1542 1.3072 37 1 0.5490 2.1253 1.3970 38 1 3.7326 3.4508 -0.0815 39 1 6.1065 2.0723 0.5825 40 1 5.9676 2.1276 -1.1912 41 1 9.0902 3.1637 0.5032 42 1 8.2267 2.3459 -0.8354 43 1 9.9519 3.9166 -3.6034 44 1 9.5074 2.3327 -2.9239 45 1 8.2630 3.5852 -3.1498 46 1 8.5886 7.0234 -2.6947 47 1 9.6261 5.8271 -3.5075 48 1 7.9477 5.4098 -3.0865 49 1 10.8856 5.8089 0.0033 50 1 11.3473 6.0609 -1.6972 51 1 9.3572 7.9492 -1.0258 52 1 11.6716 11.6404 0.1503 53 1 7.4833 6.3819 -0.6613 54 1 8.5998 5.8170 0.6183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183432926.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:57 Heat of formation + Delta-G solvation = -93.727664 kcal Electronic energy + Delta-G solvation = -30531.028903 eV Core-core repulsion = 26501.720970 eV Total energy + Delta-G solvation = -4029.307933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73580 -40.95441 -39.58382 -36.67872 -36.43960 -35.60659 -34.66713 -33.32639 -31.63323 -31.01499 -29.49433 -28.40326 -26.90267 -26.67019 -25.92735 -24.65662 -22.72566 -22.40803 -21.08603 -20.50874 -20.21211 -19.38967 -18.51893 -17.74338 -17.43706 -17.08921 -16.72588 -16.53914 -16.16251 -16.02417 -15.52156 -15.47747 -15.23909 -15.01781 -14.83859 -14.64056 -14.42068 -14.24178 -14.00224 -13.82467 -13.59220 -13.48605 -13.41521 -13.14476 -12.98382 -12.94577 -12.65621 -12.57607 -12.57125 -12.52661 -12.40102 -12.11414 -11.87974 -11.72988 -11.59078 -11.53971 -11.48807 -11.26846 -11.14128 -10.99026 -10.87327 -10.30049 -9.84671 -9.28494 -8.03882 -5.35482 1.34217 1.36039 1.36444 1.42423 1.54356 1.56360 2.26445 2.45070 3.18300 3.28255 3.47679 3.52634 3.65435 3.74459 3.84622 3.93898 3.97149 4.18428 4.22296 4.23559 4.24291 4.28627 4.40351 4.50883 4.52051 4.60043 4.61998 4.66615 4.72069 4.74009 4.80774 4.86950 4.94700 4.98524 5.00321 5.01842 5.04379 5.10025 5.11017 5.17349 5.23750 5.24261 5.33707 5.36641 5.39849 5.50452 5.56953 5.76439 6.20565 6.37669 6.42446 6.87408 7.07463 7.10732 7.84786 8.01508 9.17687 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.002307 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.272603 B =12135.315889 C =13207.088846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.145 4.145 6 C 0.518 3.482 7 O -0.576 6.576 8 N -0.717 5.717 9 C 0.112 3.888 10 C 0.527 3.473 11 O -0.579 6.579 12 N -0.612 5.612 13 C 0.099 3.901 14 C -0.090 4.090 15 H 0.105 0.895 16 C -0.140 4.140 17 C -0.072 4.072 18 C -0.129 4.129 19 C 0.169 3.831 20 N -0.757 5.757 21 C -0.226 4.226 22 H 0.062 0.938 23 C -0.060 4.060 24 N -0.982 5.982 25 Si 0.943 3.057 26 H -0.282 1.282 27 H -0.295 1.295 28 H -0.257 1.257 29 C 0.117 3.883 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.414 0.586 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.034 0.966 51 H 0.363 0.637 52 H 0.257 0.743 53 H 0.057 0.943 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.900 -25.215 -2.858 32.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.127 4.127 4 H 0.134 0.866 5 C -0.202 4.202 6 C 0.306 3.694 7 O -0.455 6.455 8 N -0.372 5.372 9 C -0.015 4.015 10 C 0.316 3.684 11 O -0.459 6.459 12 N -0.344 5.344 13 C -0.022 4.022 14 C -0.109 4.109 15 H 0.123 0.877 16 C -0.197 4.197 17 C -0.073 4.073 18 C -0.186 4.186 19 C 0.043 3.957 20 N -0.403 5.403 21 C -0.357 4.357 22 H 0.080 0.920 23 C -0.252 4.252 24 N -0.633 5.633 25 Si 0.771 3.229 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.181 1.181 29 C -0.006 4.006 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.051 0.949 50 H 0.052 0.948 51 H 0.196 0.804 52 H 0.066 0.934 53 H 0.075 0.925 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.772 -25.453 -2.805 32.352 hybrid contribution -0.511 1.795 0.055 1.868 sum -20.283 -23.658 -2.749 31.284 Atomic orbital electron populations 1.21823 0.93718 1.02464 1.02744 1.21317 0.96815 0.93695 1.02303 1.21405 0.89099 1.00017 1.02163 0.86648 1.21852 1.03653 1.00104 0.94621 1.21249 0.91309 0.82386 0.74415 1.90684 1.71239 1.32430 1.51143 1.45846 1.06404 1.10186 1.74782 1.21021 0.82495 0.92284 1.05725 1.20479 0.80699 0.91549 0.75663 1.90699 1.55228 1.47515 1.52482 1.48923 1.05048 1.09520 1.70914 1.22944 0.86256 0.92536 1.00469 1.22207 1.00777 0.91112 0.96807 0.87714 1.21894 1.01563 1.01605 0.94640 1.21644 0.93887 0.96634 0.95119 1.21854 1.01427 0.99500 0.95857 1.20894 0.94632 0.82011 0.98134 1.42779 1.10107 1.04289 1.83097 1.19051 0.92487 0.88748 1.35423 0.91955 1.25384 1.00846 0.96356 1.02623 1.69862 1.34317 1.02957 1.56129 0.85591 0.81194 0.77567 0.78528 1.20863 1.22140 1.18146 1.22344 0.93461 0.85427 0.99342 0.92133 0.91470 0.91937 0.92464 0.92424 0.92698 0.91882 0.89220 0.74716 0.87293 0.87039 0.88988 0.87137 0.92127 0.90467 0.93034 0.95087 0.91126 0.91689 0.94865 0.94821 0.80372 0.93429 0.92481 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.58 16 2 C -0.10 -1.35 4.75 30.59 0.15 -1.21 16 3 C -0.11 -1.34 2.73 -11.54 -0.03 -1.37 16 4 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 5 C -0.14 -1.48 8.84 71.98 0.64 -0.84 16 6 C 0.52 9.74 7.15 87.66 0.63 10.37 16 7 O -0.58 -14.55 15.92 -3.04 -0.05 -14.60 16 8 N -0.72 -12.87 5.42 -466.78 -2.53 -15.40 16 9 C 0.11 1.96 5.13 85.63 0.44 2.40 16 10 C 0.53 12.38 7.98 87.66 0.70 13.08 16 11 O -0.58 -17.98 15.93 -3.04 -0.05 -18.03 16 12 N -0.61 -13.57 3.31 -807.10 -2.67 -16.24 16 13 C 0.10 1.48 6.49 86.68 0.56 2.05 16 14 C -0.09 -1.55 3.30 -9.75 -0.03 -1.58 16 15 H 0.10 1.63 7.71 -2.39 -0.02 1.61 16 16 C -0.14 -2.03 7.95 71.98 0.57 -1.46 16 17 C -0.07 -1.86 0.73 -51.27 -0.04 -1.90 16 18 C -0.13 -3.46 7.08 71.98 0.51 -2.95 16 19 C 0.17 5.82 4.85 86.38 0.42 6.24 16 20 N -0.76 -34.21 4.93 -343.46 -1.69 -35.90 16 21 C -0.23 -12.68 10.47 84.03 0.88 -11.80 16 22 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 23 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 24 N -0.98 -62.94 13.97 21.65 0.30 -62.64 16 25 Si 0.94 46.40 27.73 68.60 1.90 48.30 16 26 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 29 C 0.12 3.35 5.54 86.55 0.48 3.83 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.46 6.57 -2.38 -0.02 0.44 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.90 7.95 -2.39 -0.02 0.88 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.65 7.57 -2.39 -0.02 0.63 16 37 H 0.09 0.61 6.56 -2.39 -0.02 0.59 16 38 H 0.41 7.32 6.86 -92.71 -0.64 6.69 16 39 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.11 1.69 7.96 -2.39 -0.02 1.67 16 41 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.11 1.06 7.04 -2.39 -0.02 1.04 16 43 H 0.06 0.96 6.89 -2.39 -0.02 0.94 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.81 6.72 -2.39 -0.02 0.80 16 46 H 0.03 0.99 7.01 -2.39 -0.02 0.98 16 47 H 0.07 1.76 6.98 -2.39 -0.02 1.74 16 48 H 0.06 1.55 6.62 -2.39 -0.02 1.54 16 49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.36 16.21 4.14 -92.71 -0.38 15.83 16 52 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 53 H 0.06 1.92 7.60 -2.39 -0.02 1.90 16 54 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 Total: -1.00 -75.73 415.96 2.06 -73.67 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.19 Total: 29.68 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 7.03 Total: 11.16 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -6.59 Total: -130.18 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.10 Total: -32.63 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -75.73 2.06 -73.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183432926.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.054 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds