Wall clock time and date at job start Tue Mar 31 2020 22:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46613 * 2 1 4 4 H 1.08995 * 109.47365 * 55.00523 * 3 2 1 5 5 C 1.52996 * 109.47240 * 294.99941 * 3 2 1 6 6 C 1.53006 * 109.46629 * 175.00119 * 3 2 1 7 7 H 1.08995 * 109.46917 * 60.00130 * 6 3 2 8 8 C 1.53000 * 109.46816 * 180.02562 * 6 3 2 9 9 C 1.50697 * 109.47057 * 299.99532 * 6 3 2 10 10 O 1.21276 * 120.00405 * 332.35574 * 9 6 3 11 11 N 1.34784 * 119.99868 * 152.34567 * 9 6 3 12 12 C 1.47611 * 118.74386 * 5.05690 * 11 9 6 13 13 C 1.54175 * 111.09326 * 138.19253 * 12 11 9 14 14 C 1.51280 * 109.77903 * 320.24128 * 13 12 11 15 15 N 1.46196 * 109.09866 * 92.30619 * 14 13 12 16 16 C 1.46895 * 110.99703 * 144.77675 * 15 14 13 17 17 C 1.50704 * 109.47469 * 197.07971 * 16 15 14 18 18 O 1.21302 * 119.99203 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00601 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00004 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00258 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99792 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00117 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47096 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46816 * 120.00204 * 24 22 20 27 27 H 1.48496 * 109.47338 * 240.00244 * 24 22 20 28 28 C 1.41448 * 116.34444 * 272.97718 * 15 14 13 29 29 C 1.44879 * 118.74684 * 185.31520 * 11 9 6 30 30 H 1.09005 * 109.46538 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47431 * 60.00210 * 1 2 3 32 32 H 1.09001 * 109.47317 * 299.99652 * 1 2 3 33 33 H 1.09001 * 109.47066 * 119.99962 * 2 1 3 34 34 H 1.09001 * 109.46951 * 239.99949 * 2 1 3 35 35 H 1.09001 * 109.46999 * 60.00477 * 5 3 2 36 36 H 1.09001 * 109.46974 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47193 * 300.00459 * 5 3 2 38 38 H 1.08996 * 109.47419 * 53.29516 * 8 6 3 39 39 H 1.08999 * 109.46997 * 173.30290 * 8 6 3 40 40 H 1.09007 * 109.47007 * 293.29775 * 8 6 3 41 41 H 1.08998 * 109.11086 * 258.77880 * 12 11 9 42 42 H 1.09001 * 109.11358 * 17.84427 * 12 11 9 43 43 H 1.09001 * 109.45087 * 200.09570 * 13 12 11 44 44 H 1.09000 * 109.26628 * 80.26971 * 13 12 11 45 45 H 1.09001 * 109.53086 * 332.42187 * 14 13 12 46 46 H 1.08996 * 109.59635 * 212.23173 * 14 13 12 47 47 H 1.09001 * 109.47328 * 317.07894 * 16 15 14 48 48 H 1.08998 * 109.47481 * 77.07751 * 16 15 14 49 49 H 0.97002 * 119.99544 * 0.02562 * 19 17 16 50 50 H 0.96999 * 120.00248 * 179.97438 * 23 22 20 51 51 H 1.09002 * 109.38385 * 303.32157 * 28 15 14 52 52 H 1.08997 * 109.38129 * 183.64645 * 28 15 14 53 53 H 1.09001 * 109.43647 * 29.80149 * 29 11 9 54 54 H 1.09006 * 109.43540 * 149.67258 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7161 8 6 4.0747 2.8869 0.1263 9 6 3.9635 0.7707 1.4134 10 8 3.2080 0.7803 2.3621 11 7 5.1597 0.1573 1.5108 12 6 6.1034 0.2584 0.3803 13 6 7.5433 0.4935 0.8787 14 6 7.5301 1.4553 2.0463 15 7 7.4525 0.6943 3.2921 16 6 8.2246 1.3478 4.3572 17 6 8.4756 0.3647 5.4715 18 8 8.0531 -0.7691 5.3864 19 7 9.1703 0.7449 6.5620 20 6 9.3981 -0.1494 7.5758 21 1 9.0212 -1.1587 7.5005 22 6 10.1139 0.2428 8.7004 23 7 10.5720 1.4710 8.7923 24 14 10.4249 -0.9759 10.0815 25 1 9.8096 -2.2827 9.7365 26 1 11.8879 -1.1515 10.2665 27 1 9.8250 -0.4625 11.3392 28 6 6.1545 0.3564 3.7414 29 6 5.4680 -0.5808 2.7188 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 0.5488 2.1252 -1.3968 36 1 1.9988 3.1541 -1.3075 37 1 2.0698 1.5875 -2.1492 38 1 3.5512 3.4570 0.8938 39 1 5.1445 2.8940 0.3347 40 1 3.8915 3.3375 -0.8492 41 1 6.0682 -0.6652 -0.1976 42 1 5.8067 1.0898 -0.2591 43 1 8.1433 0.9118 0.0706 44 1 7.9736 -0.4564 1.1959 45 1 6.6648 2.1133 1.9667 46 1 8.4429 2.0510 2.0395 47 1 9.1775 1.6929 3.9558 48 1 7.6634 2.1988 4.7431 49 1 9.5085 1.6515 6.6298 50 1 11.0714 1.7449 9.5775 51 1 5.5627 1.2648 3.8538 52 1 6.2252 -0.1489 4.7046 53 1 4.5467 -0.9740 3.1486 54 1 6.1369 -1.4072 2.4782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197587109.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:21 Heat of formation + Delta-G solvation = -95.460420 kcal Electronic energy + Delta-G solvation = -31332.356970 eV Core-core repulsion = 27302.973899 eV Total energy + Delta-G solvation = -4029.383071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78641 -40.48775 -38.99700 -37.53488 -36.38676 -35.75162 -33.73919 -33.28016 -33.19007 -30.67580 -29.41084 -28.10310 -27.02815 -26.71057 -25.77372 -24.11287 -22.78593 -21.68676 -21.23815 -20.96124 -19.91902 -19.48631 -18.37339 -17.89399 -17.26904 -16.87493 -16.65369 -16.39501 -16.19379 -15.89943 -15.68613 -15.57104 -15.49057 -14.93692 -14.76626 -14.38149 -14.31066 -14.14625 -13.73489 -13.59933 -13.47769 -13.44602 -13.15974 -13.02841 -12.89628 -12.72402 -12.65364 -12.53795 -12.49616 -12.42732 -12.37832 -12.25885 -12.13067 -11.83262 -11.79983 -11.52156 -11.46964 -11.40525 -11.32180 -10.56599 -10.28885 -10.00574 -9.63174 -9.09390 -8.47097 -5.95463 1.35260 1.40251 1.54519 1.64366 2.03781 2.06219 2.27583 2.75118 3.19528 3.36742 3.49581 3.67319 3.86185 3.91065 4.00198 4.10028 4.13202 4.15207 4.29071 4.32309 4.39149 4.39948 4.42684 4.49013 4.53870 4.54275 4.59009 4.64352 4.72324 4.75585 4.78786 4.84430 4.89656 4.93421 4.95478 5.02150 5.11466 5.11723 5.13898 5.18067 5.25204 5.29496 5.35589 5.40745 5.51495 5.57613 5.66928 5.91784 6.13730 6.37316 6.54960 6.60444 7.12854 7.22510 7.56376 8.12153 8.70572 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.002285 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.828812 B =12251.588889 C =12763.280411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.073 4.073 4 H 0.051 0.949 5 C -0.143 4.143 6 C -0.100 4.100 7 H 0.119 0.881 8 C -0.141 4.141 9 C 0.506 3.494 10 O -0.586 6.586 11 N -0.606 5.606 12 C 0.100 3.900 13 C -0.126 4.126 14 C 0.070 3.930 15 N -0.548 5.548 16 C 0.065 3.935 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.329 4.329 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.076 3.924 29 C 0.135 3.865 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.054 0.946 49 H 0.395 0.605 50 H 0.277 0.723 51 H -0.001 1.001 52 H 0.065 0.935 53 H 0.063 0.937 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 4.739 -26.281 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.070 0.930 5 C -0.200 4.200 6 C -0.121 4.121 7 H 0.137 0.863 8 C -0.198 4.198 9 C 0.296 3.704 10 O -0.466 6.466 11 N -0.338 5.338 12 C -0.021 4.021 13 C -0.165 4.165 14 C -0.056 4.056 15 N -0.273 5.273 16 C -0.066 4.066 17 C 0.227 3.773 18 O -0.498 6.498 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.054 4.054 29 C 0.011 3.989 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.108 0.892 47 H 0.134 0.866 48 H 0.072 0.928 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.017 0.983 52 H 0.083 0.917 53 H 0.081 0.919 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.810 3.663 -25.816 28.625 hybrid contribution 0.013 0.431 1.954 2.001 sum -11.797 4.095 -23.862 26.932 Atomic orbital electron populations 1.21763 0.95219 1.01655 1.01894 1.21594 0.96799 0.96458 1.01083 1.20992 0.92369 0.96482 0.99392 0.92999 1.21894 1.01906 1.00811 0.95360 1.21504 0.97929 0.98358 0.94327 0.86324 1.21835 1.01147 0.92902 1.03956 1.21516 0.80567 0.77693 0.90615 1.90671 1.53379 1.60792 1.41788 1.48080 1.16503 1.51415 1.17770 1.22460 0.88625 1.04074 0.86918 1.21947 0.96052 1.00626 0.97833 1.21715 1.01493 0.94676 0.87764 1.57828 1.15637 1.49612 1.04236 1.21730 1.00052 0.93578 0.91196 1.20846 0.82241 0.89684 0.84491 1.90461 1.55511 1.22794 1.81016 1.41956 1.48996 1.13931 1.16459 1.19671 1.33614 0.95229 0.97362 0.90383 1.26036 0.96125 0.98658 1.00621 1.69677 1.37413 1.18020 1.31154 0.84881 0.78309 0.77794 0.77409 1.19863 1.19432 1.19758 1.21460 0.87741 0.97109 0.99128 1.21195 0.98925 0.93974 0.84847 0.92793 0.90817 0.94156 0.94836 0.90740 0.91985 0.91428 0.91041 0.93837 0.91689 0.88195 0.89839 0.87209 0.86554 0.91644 0.94601 0.89247 0.86573 0.92762 0.77111 0.91352 0.98325 0.91719 0.91891 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.12 -2.22 5.20 30.60 0.16 -2.06 16 3 C -0.07 -1.23 1.62 -10.79 -0.02 -1.24 16 4 H 0.05 1.17 7.86 -2.39 -0.02 1.16 16 5 C -0.14 -1.43 8.60 71.98 0.62 -0.81 16 6 C -0.10 -1.59 1.44 -11.54 -0.02 -1.61 16 7 H 0.12 1.21 6.70 -2.39 -0.02 1.20 16 8 C -0.14 -1.82 8.27 71.98 0.60 -1.23 16 9 C 0.51 12.93 5.75 87.65 0.50 13.44 16 10 O -0.59 -20.85 14.73 -3.02 -0.04 -20.89 16 11 N -0.61 -14.42 2.17 -817.17 -1.78 -16.19 16 12 C 0.10 1.46 5.67 86.56 0.49 1.95 16 13 C -0.13 -2.06 5.79 30.43 0.18 -1.89 16 14 C 0.07 1.56 5.32 85.87 0.46 2.02 16 15 N -0.55 -17.91 3.60 -916.20 -3.30 -21.21 16 16 C 0.07 2.33 5.44 85.56 0.47 2.79 16 17 C 0.44 21.40 7.37 87.66 0.65 22.05 16 18 O -0.61 -34.15 13.97 -3.10 -0.04 -34.19 16 19 N -0.58 -30.21 5.29 -306.98 -1.62 -31.83 16 20 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 24 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 28 C 0.08 2.79 5.01 87.90 0.44 3.23 16 29 C 0.14 4.24 5.47 87.29 0.48 4.72 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.91 6.56 -2.39 -0.02 0.89 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.03 0.84 6.44 -2.39 -0.02 0.83 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 0.61 6.57 -2.39 -0.02 0.59 16 36 H 0.07 0.56 6.58 -2.39 -0.02 0.55 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.79 7.00 -2.39 -0.02 0.78 16 40 H 0.10 0.72 6.81 -2.38 -0.02 0.70 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.99 4.75 -2.39 -0.01 0.97 16 43 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.40 7.98 -2.39 -0.02 1.38 16 45 H 0.04 0.82 7.19 -2.39 -0.02 0.80 16 46 H 0.09 1.68 7.36 -2.39 -0.02 1.67 16 47 H 0.12 3.49 7.57 -2.39 -0.02 3.47 16 48 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 49 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 50 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 51 H 0.00 -0.05 8.12 -2.39 -0.02 -0.07 16 52 H 0.06 2.96 5.62 -2.39 -0.01 2.94 16 53 H 0.06 2.19 7.37 -2.39 -0.02 2.18 16 54 H 0.08 2.63 8.11 -2.38 -0.02 2.61 16 Total: -1.00 -75.78 406.52 2.65 -73.13 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.16 Total: 34.52 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.97 Total: 21.06 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -6.42 Total: -119.50 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.09 Total: -55.09 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -75.78 2.65 -73.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197587109.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.330 kcal (2) G-P(sol) polarization free energy of solvation -75.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds