Wall clock time and date at job start Wed Apr 1 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46870 * 2 1 4 4 N 1.46902 * 109.46923 * 120.00341 * 2 1 3 5 5 C 1.47841 * 111.00268 * 51.23416 * 4 2 1 6 6 C 1.54903 * 104.79599 * 146.36355 * 5 4 2 7 7 C 1.55397 * 101.74217 * 323.02214 * 6 5 4 8 8 C 1.47438 * 110.99679 * 172.08132 * 4 2 1 9 9 H 1.08996 * 109.89392 * 117.17348 * 8 4 2 10 10 C 1.50693 * 109.89104 * 356.14213 * 8 4 2 11 11 O 1.21285 * 120.00236 * 300.74986 * 10 8 4 12 12 N 1.34776 * 120.00150 * 120.47356 * 10 8 4 13 13 C 1.47508 * 118.75814 * 355.58612 * 12 10 8 14 14 C 1.53945 * 110.82315 * 138.25178 * 13 12 10 15 15 C 1.51538 * 109.72923 * 320.31103 * 14 13 12 16 16 O 1.42150 * 108.76682 * 91.29122 * 15 14 13 17 17 C 1.38018 * 119.43675 * 272.78343 * 16 15 14 18 18 H 1.08991 * 109.47087 * 303.42745 * 17 16 15 19 19 C 1.53002 * 109.46993 * 183.42974 * 17 16 15 20 20 N 1.46504 * 109.46973 * 64.99015 * 19 17 16 21 21 C 1.36935 * 119.99918 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99718 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00392 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99829 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47260 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47282 * 119.99988 * 25 23 21 28 28 H 1.48501 * 109.46954 * 239.99496 * 25 23 21 29 29 C 1.45118 * 118.76055 * 175.85480 * 12 10 8 30 30 H 1.09001 * 109.47538 * 299.99829 * 1 2 3 31 31 H 1.09005 * 109.46990 * 60.00153 * 1 2 3 32 32 H 1.09005 * 109.46866 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46818 * 240.00115 * 2 1 3 34 34 H 1.08998 * 109.47103 * 293.40004 * 3 2 1 35 35 H 1.09005 * 109.46982 * 53.40241 * 3 2 1 36 36 H 1.09003 * 109.46739 * 173.39649 * 3 2 1 37 37 H 1.09004 * 110.37134 * 265.19500 * 5 4 2 38 38 H 1.08998 * 110.37322 * 27.53265 * 5 4 2 39 39 H 1.09007 * 110.99163 * 81.02296 * 6 5 4 40 40 H 1.08995 * 110.99026 * 204.79568 * 6 5 4 41 41 H 1.09002 * 110.67359 * 277.17360 * 7 6 5 42 42 H 1.09005 * 110.84725 * 153.86408 * 7 6 5 43 43 H 1.08995 * 109.17355 * 258.77408 * 13 12 10 44 44 H 1.09007 * 109.16313 * 17.97431 * 13 12 10 45 45 H 1.09001 * 109.46103 * 200.18240 * 14 13 12 46 46 H 1.08997 * 109.27715 * 80.32216 * 14 13 12 47 47 H 1.09009 * 109.58646 * 331.50504 * 15 14 13 48 48 H 1.08996 * 109.59055 * 211.08067 * 15 14 13 49 49 H 1.08993 * 109.47196 * 184.98812 * 19 17 16 50 50 H 1.09000 * 109.47220 * 304.99451 * 19 17 16 51 51 H 0.97004 * 119.99723 * 359.97438 * 20 19 17 52 52 H 0.96999 * 120.00234 * 179.97438 * 24 23 21 53 53 H 1.09001 * 109.46077 * 29.31108 * 29 12 10 54 54 H 1.09002 * 109.46646 * 149.27296 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.3815 -2.0184 1.3434 6 6 2.4724 -2.9156 1.9794 7 6 3.7590 -2.3900 1.2842 8 6 3.4811 -0.8786 1.1424 9 1 3.9562 -0.3361 1.9597 10 6 4.0101 -0.3818 -0.1783 11 8 3.6067 -0.8667 -1.2142 12 7 4.9274 0.6051 -0.2085 13 6 5.3216 1.2468 1.0598 14 6 6.8427 1.4791 1.1060 15 6 7.5606 0.2883 0.5037 16 8 7.7519 0.5241 -0.8850 17 6 6.7596 0.1693 -1.7763 18 1 6.5340 -0.8913 -1.6656 19 6 7.2351 0.4431 -3.2045 20 7 8.3684 -0.4309 -3.5179 21 6 8.9650 -0.3637 -4.7486 22 1 8.5998 0.3332 -5.4884 23 6 10.0384 -1.1922 -5.0456 24 7 10.4831 -2.0419 -4.1442 25 14 10.8518 -1.1011 -6.7248 26 1 10.1688 -0.0732 -7.5506 27 1 12.2822 -0.7363 -6.5628 28 1 10.7508 -2.4219 -7.3960 29 6 5.4857 1.0005 -1.4883 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.7763 1.9211 -0.9431 35 1 1.5834 1.9893 0.8251 36 1 3.1236 1.4447 0.1182 37 1 0.5139 -1.9526 2.0000 38 1 1.0913 -2.4078 0.3676 39 1 2.5237 -2.7632 3.0575 40 1 2.3007 -3.9657 1.7434 41 1 3.8836 -2.8524 0.3050 42 1 4.6357 -2.5639 1.9081 43 1 4.8069 2.2031 1.1523 44 1 5.0322 0.6038 1.8912 45 1 7.1591 1.6082 2.1411 46 1 7.0871 2.3761 0.5370 47 1 6.9586 -0.6098 0.6424 48 1 8.5280 0.1608 0.9893 49 1 6.4212 0.2469 -3.9024 50 1 7.5448 1.4846 -3.2910 51 1 8.6966 -1.0566 -2.8532 52 1 11.2330 -2.6211 -4.3519 53 1 4.7517 0.8244 -2.2747 54 1 5.7416 2.0597 -1.4614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200478075.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:10 Heat of formation + Delta-G solvation = -49.105121 kcal Electronic energy + Delta-G solvation = -32567.066656 eV Core-core repulsion = 28539.693701 eV Total energy + Delta-G solvation = -4027.372954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55762 -40.54882 -38.68811 -37.01156 -36.32137 -35.45106 -34.34753 -32.68601 -31.53899 -30.20280 -29.85624 -27.94720 -27.79466 -26.69449 -24.90908 -23.47373 -22.85993 -22.33716 -22.12931 -21.48657 -19.71578 -19.29123 -18.61015 -17.91014 -17.74311 -17.48256 -16.97622 -16.48637 -16.30564 -16.25329 -15.59200 -15.25322 -15.18009 -14.98607 -14.82837 -14.60078 -14.30679 -14.05927 -13.97528 -13.71555 -13.48236 -13.26715 -13.16778 -13.11198 -12.98218 -12.81563 -12.72300 -12.61423 -12.43546 -12.25727 -12.20212 -12.08721 -12.03112 -11.86220 -11.82244 -11.76358 -11.53762 -11.38314 -11.04672 -11.00980 -10.58106 -9.75308 -9.15167 -9.04202 -7.96480 -5.26576 1.36757 1.45237 1.47331 1.57580 1.84409 2.54299 2.70575 2.87775 3.25023 3.37095 3.57066 3.61726 3.65789 3.77729 3.88627 4.01405 4.03730 4.09550 4.10769 4.13996 4.18065 4.34420 4.40623 4.44630 4.47046 4.51066 4.52025 4.66273 4.68888 4.72831 4.77189 4.81788 4.82645 4.85122 4.87286 4.88780 4.98868 5.01820 5.04639 5.06169 5.11955 5.18177 5.19981 5.27149 5.34102 5.45108 5.48255 5.84831 5.97507 6.20235 6.24177 6.73284 7.01902 7.30267 8.03613 8.29202 9.27584 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.002882 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.225099 B = 9712.231457 C = 9977.434568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.028 3.972 3 C -0.156 4.156 4 N -0.491 5.491 5 C 0.036 3.964 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.046 3.954 9 H 0.135 0.865 10 C 0.502 3.498 11 O -0.571 6.571 12 N -0.605 5.605 13 C 0.094 3.906 14 C -0.154 4.154 15 C 0.064 3.936 16 O -0.397 6.397 17 C 0.109 3.891 18 H 0.017 0.983 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.248 4.248 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.979 3.021 26 H -0.265 1.265 27 H -0.290 1.290 28 H -0.292 1.292 29 C 0.095 3.905 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.033 0.967 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.096 0.904 49 H 0.033 0.967 50 H 0.033 0.967 51 H 0.373 0.627 52 H 0.252 0.748 53 H 0.076 0.924 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 6.618 20.903 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C -0.214 4.214 4 N -0.217 5.217 5 C -0.092 4.092 6 C -0.155 4.155 7 C -0.173 4.173 8 C -0.065 4.065 9 H 0.152 0.848 10 C 0.292 3.708 11 O -0.450 6.450 12 N -0.337 5.337 13 C -0.026 4.026 14 C -0.192 4.192 15 C -0.011 4.011 16 O -0.316 6.316 17 C 0.048 3.952 18 H 0.035 0.965 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.380 4.380 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.217 1.217 28 H -0.219 1.219 29 C -0.030 4.030 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.050 0.950 50 H 0.051 0.949 51 H 0.205 0.795 52 H 0.060 0.940 53 H 0.095 0.905 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.896 6.888 20.555 29.424 hybrid contribution 0.795 -1.104 -1.832 2.282 sum -19.100 5.784 18.723 27.365 Atomic orbital electron populations 1.21820 0.93116 1.02077 1.02429 1.22500 0.96958 0.95796 0.92746 1.22144 1.02577 0.94886 1.01806 1.64331 1.01166 1.19317 1.36863 1.23202 0.98651 0.87582 0.99715 1.22747 0.91997 0.99497 1.01235 1.22848 1.00953 0.92384 1.01160 1.23031 0.91137 0.98211 0.94084 0.84831 1.21508 0.78503 0.78651 0.92184 1.90609 1.58578 1.58801 1.37049 1.48149 1.40861 1.36425 1.08250 1.22576 0.96010 0.99802 0.84229 1.22489 0.93657 0.98881 1.04202 1.22410 1.01348 0.97481 0.79901 1.86359 1.44161 1.83680 1.17374 1.21826 0.88102 0.95800 0.89427 0.96519 1.20744 0.89779 0.94273 0.91651 1.42433 1.36238 1.45095 1.14494 1.19711 1.10034 1.16441 0.91764 0.90461 1.25652 1.00107 0.99070 1.02126 1.69857 1.29240 1.27229 1.35767 0.84993 0.77881 0.77265 0.79116 1.18880 1.21694 1.21938 1.22072 0.94587 1.00015 0.86323 0.91110 0.92328 0.92534 0.92466 0.93278 0.90857 0.91251 0.87967 0.94821 0.88207 0.89814 0.93613 0.88318 0.88915 0.86995 0.85946 0.90659 0.93898 0.88576 0.94970 0.94915 0.79535 0.93968 0.90522 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.91 71.98 0.64 -1.77 16 2 C 0.03 0.61 2.04 44.91 0.09 0.70 16 3 C -0.16 -3.10 8.86 71.98 0.64 -2.46 16 4 N -0.49 -9.20 5.03 -839.89 -4.22 -13.42 16 5 C 0.04 0.59 5.31 86.77 0.46 1.06 16 6 C -0.12 -1.63 7.08 32.07 0.23 -1.40 16 7 C -0.13 -2.54 6.46 31.87 0.21 -2.33 16 8 C 0.05 0.88 3.19 44.51 0.14 1.02 16 9 H 0.13 1.81 5.04 -2.39 -0.01 1.80 16 10 C 0.50 13.06 3.62 87.66 0.32 13.37 16 11 O -0.57 -20.15 13.15 -3.04 -0.04 -20.19 16 12 N -0.60 -13.88 1.14 -817.24 -0.93 -14.81 16 13 C 0.09 1.33 5.32 86.51 0.46 1.79 16 14 C -0.15 -2.39 5.79 30.43 0.18 -2.21 16 15 C 0.06 1.59 6.38 71.50 0.46 2.05 16 16 O -0.40 -14.21 9.38 -117.91 -1.11 -15.32 16 17 C 0.11 4.04 2.68 31.21 0.08 4.12 16 18 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 19 C 0.16 7.25 5.92 86.38 0.51 7.77 16 20 N -0.74 -41.42 5.54 -343.45 -1.90 -43.32 16 21 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 22 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 24 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16 25 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 26 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 29 C 0.09 2.72 4.90 87.26 0.43 3.15 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 0.96 6.59 -2.38 -0.02 0.94 16 33 H 0.06 1.73 4.90 -5.92 -0.03 1.70 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.39 3.04 -2.39 -0.01 1.38 16 37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.03 0.68 7.15 -2.39 -0.02 0.67 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 1.19 7.53 -2.39 -0.02 1.17 16 42 H 0.10 1.47 8.14 -2.38 -0.02 1.46 16 43 H 0.09 1.00 7.72 -2.39 -0.02 0.98 16 44 H 0.11 1.09 5.02 -2.38 -0.01 1.08 16 45 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.34 8.01 -2.39 -0.02 1.32 16 47 H 0.04 1.08 7.41 -2.38 -0.02 1.06 16 48 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.37 22.45 7.65 -92.71 -0.71 21.75 16 52 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 53 H 0.08 2.47 7.22 -2.39 -0.02 2.45 16 54 H 0.10 2.53 8.11 -2.39 -0.02 2.52 16 Total: -1.00 -77.35 397.48 0.42 -76.94 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.16 Total: 35.40 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.14 Total: 6.69 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -6.77 Total: -133.59 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.15 Total: -35.50 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -77.35 0.42 -76.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200478075.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.831 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds