Wall clock time and date at job start Wed Apr 1 2020 00:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 N 1.46895 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.47442 * 111.00114 * 69.15405 * 4 3 2 6 6 C 1.54320 * 107.23078 * 123.25932 * 5 4 3 7 7 C 1.55140 * 103.01863 * 22.28695 * 6 5 4 8 8 C 1.47843 * 111.00368 * 190.00226 * 4 3 2 9 9 H 1.08996 * 110.37243 * 332.57438 * 8 4 3 10 10 C 1.50699 * 110.37697 * 94.80510 * 8 4 3 11 11 O 1.21278 * 120.00027 * 0.02562 * 10 8 4 12 12 N 1.34777 * 120.00053 * 180.02562 * 10 8 4 13 13 C 1.47504 * 118.75687 * 0.02610 * 12 10 8 14 14 C 1.53572 * 111.03393 * 138.34664 * 13 12 10 15 15 C 1.51537 * 109.57759 * 320.01724 * 14 13 12 16 16 O 1.42155 * 108.75081 * 91.39696 * 15 14 13 17 17 C 1.38012 * 119.44566 * 272.76931 * 16 15 14 18 18 H 1.08996 * 109.46780 * 303.42512 * 17 16 15 19 19 C 1.53002 * 109.46931 * 183.43357 * 17 16 15 20 20 N 1.46503 * 109.47241 * 64.99108 * 19 17 16 21 21 C 1.36937 * 120.00090 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99923 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00246 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99492 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00236 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47109 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47220 * 119.99767 * 25 23 21 28 28 H 1.48499 * 109.46923 * 239.99555 * 25 23 21 29 29 C 1.45121 * 118.75648 * 179.97438 * 12 10 8 30 30 H 1.08997 * 109.47426 * 59.99999 * 1 2 3 31 31 H 1.08999 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47275 * 299.99870 * 1 2 3 33 33 H 1.08993 * 109.46974 * 240.00186 * 2 1 3 34 34 H 1.08996 * 109.46989 * 119.99695 * 2 1 3 35 35 H 1.09002 * 109.47016 * 59.99972 * 3 2 1 36 36 H 1.09005 * 109.47386 * 300.00177 * 3 2 1 37 37 H 1.08999 * 109.89044 * 242.66649 * 5 4 3 38 38 H 1.09001 * 109.88582 * 3.69512 * 5 4 3 39 39 H 1.09003 * 110.70507 * 140.67123 * 6 5 4 40 40 H 1.09005 * 110.70463 * 263.72714 * 6 5 4 41 41 H 1.09000 * 110.98756 * 206.25324 * 7 6 5 42 42 H 1.08998 * 110.98874 * 82.44305 * 7 6 5 43 43 H 1.09010 * 109.16511 * 258.74376 * 13 12 10 44 44 H 1.08999 * 109.17317 * 17.94077 * 13 12 10 45 45 H 1.08999 * 109.45292 * 80.04969 * 14 13 12 46 46 H 1.08997 * 109.45513 * 200.00783 * 14 13 12 47 47 H 1.08989 * 109.59256 * 211.17998 * 15 14 13 48 48 H 1.08996 * 109.58751 * 331.47750 * 15 14 13 49 49 H 1.09001 * 109.47045 * 184.98866 * 19 17 16 50 50 H 1.09001 * 109.47359 * 304.99266 * 19 17 16 51 51 H 0.96994 * 119.99751 * 359.97438 * 20 19 17 52 52 H 0.97002 * 119.99422 * 180.02562 * 24 23 21 53 53 H 1.08998 * 109.46485 * 149.28630 * 29 12 10 54 54 H 1.09001 * 109.45880 * 29.32598 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0379 0.9526 -1.2855 6 6 4.9565 2.0556 -1.8519 7 6 5.3448 2.8695 -0.5895 8 6 4.0386 2.8019 0.2404 9 1 3.3281 3.5525 -0.1055 10 6 4.3366 2.9983 1.7045 11 8 4.1325 2.0978 2.4909 12 7 4.8297 4.1745 2.1400 13 6 5.0668 5.2511 1.1599 14 6 4.6216 6.6113 1.7167 15 6 3.3254 6.4461 2.4842 16 8 3.6315 6.1952 3.8495 17 6 3.8538 4.8990 4.2679 18 1 2.9879 4.2843 4.0218 19 6 4.0769 4.8828 5.7815 20 7 2.8492 5.3044 6.4607 21 6 2.8104 5.3680 7.8280 22 1 3.6848 5.1069 8.4057 23 6 1.6470 5.7669 8.4716 24 7 0.5813 6.0846 7.7674 25 14 1.5939 5.8530 10.3368 26 1 2.9116 5.4478 10.8887 27 1 1.2858 7.2427 10.7597 28 1 0.5418 4.9363 10.8448 29 6 5.1063 4.3344 3.5556 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 4.6101 0.0385 -1.1270 38 1 3.2161 0.7606 -1.9754 39 1 5.8410 1.6196 -2.3165 40 1 4.4162 2.6789 -2.5645 41 1 5.5897 3.8994 -0.8491 42 1 6.1702 2.3956 -0.0581 43 1 6.1302 5.2919 0.9235 44 1 4.5069 5.0363 0.2498 45 1 5.3912 7.0001 2.3834 46 1 4.4689 7.3084 0.8929 47 1 2.7343 7.3582 2.4038 48 1 2.7620 5.6081 2.0738 49 1 4.3397 3.8738 6.0992 50 1 4.8865 5.5666 6.0368 51 1 2.0641 5.5392 5.9418 52 1 -0.2316 6.3637 8.2171 53 1 5.9403 5.0237 3.6872 54 1 5.3636 3.3669 3.9868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200634872.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:35 Heat of formation + Delta-G solvation = -78.190587 kcal Electronic energy + Delta-G solvation = -31693.410145 eV Core-core repulsion = 27664.775951 eV Total energy + Delta-G solvation = -4028.634195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90213 -40.33871 -38.93568 -36.94921 -36.27536 -35.42533 -34.33387 -32.67655 -31.71173 -31.28015 -29.75613 -27.68006 -26.79167 -26.40132 -24.83068 -23.33764 -22.97168 -22.35248 -22.20383 -21.25901 -19.89506 -19.27873 -18.62244 -17.83422 -17.58137 -17.22968 -16.79621 -16.59232 -16.44372 -15.87518 -15.69062 -15.34408 -15.17491 -14.90536 -14.77689 -14.71806 -14.40953 -14.07684 -13.91268 -13.85309 -13.69053 -13.55892 -13.26287 -13.12236 -12.81376 -12.80772 -12.75156 -12.59476 -12.31258 -12.27276 -12.20931 -12.06635 -11.92792 -11.84302 -11.77941 -11.68098 -11.57703 -11.46419 -11.01020 -10.74261 -10.56602 -9.62386 -9.27756 -9.03770 -7.95932 -5.26120 1.45240 1.47819 1.57949 1.60110 1.84664 2.54823 2.70361 2.90289 3.37420 3.38318 3.57441 3.63479 3.80212 3.85326 3.88807 3.99988 4.02274 4.07131 4.12684 4.13334 4.18233 4.27800 4.36091 4.41399 4.44384 4.49422 4.52377 4.54434 4.67206 4.68593 4.71315 4.76209 4.83295 4.84004 4.86496 4.90883 4.95966 5.06888 5.08564 5.11627 5.12257 5.20321 5.24785 5.32243 5.33615 5.45574 5.53653 5.88786 6.09737 6.24583 6.34713 6.73220 7.22019 7.30514 8.03913 8.29681 9.28287 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002916 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.740123 B = 9599.840128 C =10938.350965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.058 3.942 4 N -0.537 5.537 5 C 0.040 3.960 6 C -0.131 4.131 7 C -0.114 4.114 8 C 0.058 3.942 9 H 0.093 0.907 10 C 0.506 3.494 11 O -0.566 6.566 12 N -0.609 5.609 13 C 0.099 3.901 14 C -0.157 4.157 15 C 0.064 3.936 16 O -0.396 6.396 17 C 0.107 3.893 18 H 0.013 0.987 19 C 0.163 3.837 20 N -0.741 5.741 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.980 3.020 26 H -0.264 1.264 27 H -0.290 1.290 28 H -0.293 1.293 29 C 0.097 3.903 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.095 0.905 48 H 0.037 0.963 49 H 0.032 0.968 50 H 0.035 0.965 51 H 0.372 0.628 52 H 0.251 0.749 53 H 0.104 0.896 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.771 -4.625 -29.403 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.069 4.069 4 N -0.262 5.262 5 C -0.087 4.087 6 C -0.169 4.169 7 C -0.152 4.152 8 C -0.053 4.053 9 H 0.111 0.889 10 C 0.294 3.706 11 O -0.444 6.444 12 N -0.342 5.342 13 C -0.021 4.021 14 C -0.195 4.195 15 C -0.012 4.012 16 O -0.315 6.315 17 C 0.047 3.953 18 H 0.031 0.969 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.809 3.191 26 H -0.188 1.188 27 H -0.216 1.216 28 H -0.220 1.220 29 C -0.028 4.028 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.141 0.859 47 H 0.113 0.887 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.204 0.796 52 H 0.060 0.940 53 H 0.122 0.878 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.943 -5.319 -28.316 30.820 hybrid contribution -1.211 0.267 0.733 1.441 sum 9.732 -5.051 -27.583 29.683 Atomic orbital electron populations 1.21725 0.94780 1.02380 1.01803 1.21436 0.96010 0.95539 1.02087 1.22249 0.86772 0.98028 0.99889 1.62940 1.08163 1.21269 1.33828 1.22938 0.98708 0.98937 0.88095 1.22790 1.00506 0.96788 0.96810 1.22835 0.93965 1.03277 0.95107 1.22512 0.99714 0.92194 0.90926 0.88910 1.21291 0.76190 0.81524 0.91594 1.90699 1.52352 1.43149 1.58161 1.48014 1.64585 1.14029 1.07601 1.22463 1.03372 0.85410 0.90896 1.22457 0.97491 0.97657 1.01861 1.22398 0.97406 1.00748 0.80629 1.86350 1.89982 1.27029 1.28176 1.21829 0.95891 0.83649 0.93917 0.96898 1.20747 0.89723 0.97142 0.88795 1.42445 1.11339 1.81048 1.03489 1.19725 0.97483 1.36681 0.83991 0.90393 1.25674 0.95755 1.02732 1.02932 1.69870 1.02906 1.53617 1.35808 0.84972 0.77728 0.76902 0.79529 1.18821 1.21646 1.21966 1.22031 0.97448 1.02209 0.81076 0.91440 0.91634 0.94035 0.90564 0.93600 0.94066 0.92775 0.91113 0.91059 0.88767 0.89232 0.86687 0.91398 0.88402 0.87610 0.90496 0.85914 0.88703 0.94466 0.94981 0.94724 0.79611 0.93991 0.87760 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 71.98 0.71 -1.91 16 2 C -0.11 -2.26 5.95 30.59 0.18 -2.08 16 3 C 0.06 1.26 4.53 86.30 0.39 1.65 16 4 N -0.54 -11.69 4.34 -865.01 -3.75 -15.45 16 5 C 0.04 0.57 6.20 86.65 0.54 1.11 16 6 C -0.13 -1.11 6.94 31.78 0.22 -0.89 16 7 C -0.11 -1.30 5.65 31.98 0.18 -1.12 16 8 C 0.06 1.11 1.84 44.64 0.08 1.20 16 9 H 0.09 1.48 6.98 -2.39 -0.02 1.46 16 10 C 0.51 14.33 7.07 87.66 0.62 14.95 16 11 O -0.57 -22.52 15.91 -3.02 -0.05 -22.57 16 12 N -0.61 -14.68 2.19 -818.07 -1.80 -16.47 16 13 C 0.10 1.35 4.78 86.38 0.41 1.76 16 14 C -0.16 -2.44 5.79 30.31 0.18 -2.26 16 15 C 0.06 1.65 6.37 71.50 0.46 2.11 16 16 O -0.40 -14.65 9.38 -117.83 -1.11 -15.76 16 17 C 0.11 4.16 2.68 31.19 0.08 4.24 16 18 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 19 C 0.16 7.46 5.92 86.38 0.51 7.97 16 20 N -0.74 -42.29 5.54 -343.44 -1.90 -44.19 16 21 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 22 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 23 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 24 N -0.97 -63.18 13.06 21.65 0.28 -62.89 16 25 Si 0.98 48.58 29.55 68.60 2.03 50.60 16 26 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 29 C 0.10 2.92 4.86 87.24 0.42 3.34 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.25 7.09 -2.39 -0.02 1.23 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.05 0.90 7.99 -2.38 -0.02 0.88 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.82 6.87 -2.39 -0.02 0.81 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.11 0.60 6.41 -2.39 -0.02 0.58 16 42 H 0.07 1.01 8.05 -2.39 -0.02 0.99 16 43 H 0.10 0.85 8.11 -2.38 -0.02 0.83 16 44 H 0.11 0.93 4.90 -2.39 -0.01 0.91 16 45 H 0.08 1.37 8.01 -2.39 -0.02 1.35 16 46 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.04 1.00 7.41 -2.39 -0.02 0.98 16 49 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.37 22.89 7.65 -92.71 -0.71 22.18 16 52 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 53 H 0.10 2.65 8.11 -2.39 -0.02 2.63 16 54 H 0.07 2.52 7.27 -2.39 -0.02 2.50 16 Total: -1.00 -83.30 412.06 0.16 -83.14 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.16 Total: 31.99 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.30 Total: 11.59 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -7.17 Total: -139.00 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.15 Total: -38.33 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -83.30 0.16 -83.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634872.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.949 kcal (2) G-P(sol) polarization free energy of solvation -83.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds