Wall clock time and date at job start Wed Apr 1 2020 00:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 N 1.46897 * 109.47218 * 179.97438 * 3 2 1 5 5 C 1.48801 * 111.18620 * 52.66262 * 4 3 2 6 6 C 1.54943 * 103.35092 * 159.50324 * 5 4 3 7 7 C 1.54598 * 102.92067 * 322.69327 * 6 5 4 8 8 C 1.47905 * 111.00091 * 170.00116 * 4 3 2 9 9 H 1.08999 * 109.91533 * 333.70648 * 8 4 3 10 10 C 1.50706 * 109.91948 * 94.79947 * 8 4 3 11 11 O 1.21275 * 119.99643 * 359.59954 * 10 8 4 12 12 N 1.34776 * 119.99998 * 179.59924 * 10 8 4 13 13 C 1.47511 * 118.75771 * 0.02562 * 12 10 8 14 14 C 1.53566 * 111.03127 * 221.61070 * 13 12 10 15 15 C 1.51539 * 109.57814 * 39.97588 * 14 13 12 16 16 O 1.42152 * 108.75411 * 268.59872 * 15 14 13 17 17 C 1.38020 * 119.44005 * 87.23522 * 16 15 14 18 18 H 1.08992 * 109.46954 * 56.57295 * 17 16 15 19 19 C 1.53000 * 109.46989 * 176.57123 * 17 16 15 20 20 N 1.46499 * 109.46840 * 300.00427 * 19 17 16 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47261 * 59.99582 * 25 23 21 27 27 H 1.48502 * 109.47375 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46897 * 300.00142 * 25 23 21 29 29 C 1.45121 * 118.75582 * 180.02562 * 12 10 8 30 30 H 1.08995 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47397 * 300.00303 * 1 2 3 32 32 H 1.09001 * 109.46792 * 60.00375 * 1 2 3 33 33 H 1.08997 * 109.47397 * 239.99697 * 2 1 3 34 34 H 1.09006 * 109.46785 * 120.00114 * 2 1 3 35 35 H 1.09001 * 109.47211 * 60.00031 * 3 2 1 36 36 H 1.09002 * 109.47141 * 300.00309 * 3 2 1 37 37 H 1.08998 * 110.51903 * 41.07326 * 5 4 3 38 38 H 1.09002 * 110.84481 * 278.08931 * 5 4 3 39 39 H 1.08992 * 110.72448 * 204.32680 * 6 5 4 40 40 H 1.09006 * 110.71908 * 81.04653 * 6 5 4 41 41 H 1.08995 * 110.30470 * 263.03817 * 7 6 5 42 42 H 1.09000 * 110.30712 * 140.86808 * 7 6 5 43 43 H 1.09005 * 109.16685 * 342.00983 * 13 12 10 44 44 H 1.08998 * 109.16904 * 101.26111 * 13 12 10 45 45 H 1.08994 * 109.45414 * 160.01013 * 14 13 12 46 46 H 1.09007 * 109.45174 * 279.97065 * 14 13 12 47 47 H 1.09002 * 109.59107 * 28.38118 * 15 14 13 48 48 H 1.09000 * 109.58806 * 148.82493 * 15 14 13 49 49 H 1.09002 * 109.47398 * 60.00753 * 19 17 16 50 50 H 1.09001 * 109.47194 * 180.02562 * 19 17 16 51 51 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 52 52 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 53 53 H 1.09003 * 109.45430 * 330.71490 * 29 12 10 54 54 H 1.09000 * 109.44556 * 210.75332 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0472 0.6007 -1.1022 6 6 5.4933 1.1276 -1.2813 7 6 5.3379 2.6486 -1.0521 8 6 4.0392 2.8022 -0.2391 9 1 3.3148 3.3889 -0.8039 10 6 4.3333 3.4778 1.0755 11 8 4.1187 2.8958 2.1177 12 7 4.8349 4.7286 1.0931 13 6 5.0849 5.4110 -0.1906 14 6 6.4170 6.1744 -0.1587 15 6 7.4583 5.3483 0.5692 16 8 7.4375 5.6976 1.9470 17 6 6.5657 5.0490 2.7980 18 1 6.7416 3.9745 2.7487 19 6 6.7927 5.5377 4.2300 20 7 8.1720 5.2498 4.6313 21 6 8.6084 5.5989 5.8814 22 1 7.9357 6.0861 6.5717 23 6 9.9154 5.3266 6.2615 24 7 10.7351 4.7323 5.4204 25 14 10.5106 5.8021 7.9670 26 1 9.6875 5.1082 8.9899 27 1 11.9328 5.4046 8.1238 28 1 10.3843 7.2712 8.1436 29 6 5.1086 5.3531 2.3741 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.4681 0.7491 -2.0136 38 1 4.0536 -0.4518 -0.8190 39 1 5.8558 0.9242 -2.2888 40 1 6.1579 0.6911 -0.5356 41 1 5.2505 3.1679 -2.0064 42 1 6.1861 3.0345 -0.4867 43 1 5.1161 4.6702 -0.9896 44 1 4.2751 6.1139 -0.3859 45 1 6.7516 6.3635 -1.1786 46 1 6.2793 7.1232 0.3601 47 1 7.2281 4.2888 0.4571 48 1 8.4447 5.5561 0.1545 49 1 6.6167 6.6123 4.2795 50 1 6.1046 5.0252 4.9023 51 1 8.7761 4.8119 4.0115 52 1 11.6483 4.5417 5.6861 53 1 4.4227 4.9591 3.1240 54 1 4.9729 6.4313 2.2886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200634873.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:39 Heat of formation + Delta-G solvation = -72.900366 kcal Electronic energy + Delta-G solvation = -31740.765919 eV Core-core repulsion = 27712.361126 eV Total energy + Delta-G solvation = -4028.404794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.99145 -40.29100 -38.91389 -36.98313 -36.26365 -35.44288 -34.32206 -32.67231 -31.76807 -31.26873 -29.77761 -27.66765 -26.72918 -26.39893 -24.78191 -23.37409 -23.08890 -22.48245 -21.96909 -21.29273 -20.00891 -19.27237 -18.43054 -17.80745 -17.57609 -17.10126 -16.75583 -16.67389 -16.34258 -16.08177 -15.82594 -15.22634 -15.14902 -14.93076 -14.82774 -14.71245 -14.43442 -14.06039 -13.97563 -13.83900 -13.78531 -13.35686 -13.29958 -13.11075 -12.77977 -12.73468 -12.68481 -12.51010 -12.32877 -12.30356 -12.29416 -12.13070 -11.91153 -11.84135 -11.79511 -11.65501 -11.55102 -11.35675 -10.97772 -10.73585 -10.54004 -9.62738 -9.34455 -9.02586 -7.94607 -5.24780 1.45327 1.50525 1.56225 1.58772 1.86135 2.55677 2.71921 2.92642 3.36441 3.38215 3.51612 3.64802 3.78975 3.85555 3.89016 3.98786 4.05196 4.06619 4.10735 4.13702 4.22623 4.29593 4.38094 4.41235 4.43183 4.49732 4.52464 4.55697 4.67218 4.68645 4.73783 4.75352 4.81968 4.83554 4.86594 4.87409 4.99146 5.07285 5.08040 5.13647 5.14876 5.20315 5.24332 5.28301 5.35768 5.45491 5.53889 5.82141 6.06878 6.25572 6.34381 6.75131 7.21357 7.31731 8.05714 8.31763 9.29218 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.002677 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.627202 B =10458.874388 C =11125.304643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.054 3.946 4 N -0.529 5.529 5 C 0.040 3.960 6 C -0.124 4.124 7 C -0.124 4.124 8 C 0.056 3.944 9 H 0.103 0.897 10 C 0.505 3.495 11 O -0.566 6.566 12 N -0.610 5.610 13 C 0.091 3.909 14 C -0.155 4.155 15 C 0.062 3.938 16 O -0.396 6.396 17 C 0.108 3.892 18 H 0.015 0.985 19 C 0.163 3.837 20 N -0.739 5.739 21 C -0.250 4.250 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.981 3.019 26 H -0.278 1.278 27 H -0.293 1.293 28 H -0.274 1.274 29 C 0.097 3.903 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.122 0.878 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.095 0.905 49 H 0.034 0.966 50 H 0.030 0.970 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.074 0.926 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.531 -3.534 -25.380 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.073 4.073 4 N -0.254 5.254 5 C -0.087 4.087 6 C -0.162 4.162 7 C -0.162 4.162 8 C -0.056 4.056 9 H 0.120 0.880 10 C 0.293 3.707 11 O -0.444 6.444 12 N -0.343 5.343 13 C -0.030 4.030 14 C -0.193 4.193 15 C -0.013 4.013 16 O -0.315 6.315 17 C 0.048 3.952 18 H 0.033 0.967 19 C 0.036 3.964 20 N -0.382 5.382 21 C -0.381 4.381 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.809 3.191 26 H -0.204 1.204 27 H -0.219 1.219 28 H -0.200 1.200 29 C -0.028 4.028 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.141 0.859 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.113 0.887 49 H 0.051 0.949 50 H 0.048 0.952 51 H 0.205 0.795 52 H 0.060 0.940 53 H 0.093 0.907 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.431 -3.811 -24.098 31.190 hybrid contribution 0.409 0.033 0.600 0.727 sum -19.022 -3.778 -23.498 30.467 Atomic orbital electron populations 1.21708 0.94406 1.02398 1.02000 1.21533 0.96574 0.95228 1.02321 1.22298 0.86349 0.98295 1.00401 1.64311 1.08858 1.06951 1.45280 1.23328 0.94908 0.98095 0.92341 1.22535 0.96415 0.94181 1.03055 1.22637 0.94523 0.98433 1.00634 1.22383 0.99593 0.91777 0.91890 0.87966 1.21385 0.76311 0.80981 0.92034 1.90692 1.53187 1.64379 1.36106 1.48020 1.63732 1.15242 1.07313 1.22546 0.98260 0.98276 0.83908 1.22431 0.93985 0.99418 1.03479 1.22473 1.00594 0.98236 0.80028 1.86356 1.61375 1.63958 1.19806 1.21814 0.89708 0.93842 0.89824 0.96748 1.20746 0.86635 0.97902 0.91135 1.42396 1.08987 1.72247 1.14542 1.19650 0.95476 1.31355 0.91661 0.90502 1.25671 0.96693 1.02175 1.02492 1.69849 1.06079 1.49082 1.37149 0.85111 0.76680 0.78181 0.79161 1.20394 1.21868 1.20011 1.22035 0.95365 0.99313 0.86098 0.91696 0.93407 0.91653 0.90527 0.93131 0.93144 0.92880 0.91122 0.89970 0.87588 0.92985 0.85998 0.91906 0.86799 0.89081 0.85851 0.90811 0.93843 0.88713 0.94857 0.95186 0.79465 0.93952 0.90739 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.86 5.60 30.59 0.17 -1.69 16 3 C 0.05 1.00 5.03 86.30 0.43 1.43 16 4 N -0.53 -11.29 4.54 -861.68 -3.91 -15.21 16 5 C 0.04 0.58 5.12 86.60 0.44 1.03 16 6 C -0.12 -1.76 7.07 31.80 0.22 -1.53 16 7 C -0.12 -1.72 4.61 31.47 0.15 -1.58 16 8 C 0.06 1.05 2.01 44.31 0.09 1.14 16 9 H 0.10 1.36 7.45 -2.39 -0.02 1.34 16 10 C 0.50 14.30 6.87 87.66 0.60 14.90 16 11 O -0.57 -22.41 15.89 -3.01 -0.05 -22.46 16 12 N -0.61 -14.92 2.17 -818.05 -1.78 -16.70 16 13 C 0.09 1.29 5.50 86.38 0.48 1.77 16 14 C -0.16 -2.49 5.79 30.31 0.18 -2.32 16 15 C 0.06 1.61 6.37 71.50 0.46 2.07 16 16 O -0.40 -14.78 9.18 -117.93 -1.08 -15.86 16 17 C 0.11 4.22 2.73 31.20 0.09 4.31 16 18 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 19 C 0.16 7.51 5.95 86.38 0.51 8.02 16 20 N -0.74 -42.28 5.49 -343.45 -1.88 -44.16 16 21 C -0.25 -15.13 9.99 84.03 0.84 -14.30 16 22 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 24 N -0.97 -63.20 13.06 21.65 0.28 -62.92 16 25 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 27 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 29 C 0.10 2.94 4.86 87.24 0.42 3.37 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.97 6.81 -2.39 -0.02 0.95 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 0.73 7.81 -2.39 -0.02 0.71 16 37 H 0.07 0.69 8.00 -2.39 -0.02 0.67 16 38 H 0.08 1.26 7.69 -2.39 -0.02 1.24 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.12 0.69 7.42 -2.39 -0.02 0.67 16 42 H 0.06 1.15 5.22 -2.39 -0.01 1.14 16 43 H 0.11 1.06 3.79 -2.38 -0.01 1.05 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.38 8.01 -2.38 -0.02 1.36 16 47 H 0.04 1.15 5.47 -2.39 -0.01 1.14 16 48 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 51 H 0.37 22.97 7.53 -92.71 -0.70 22.28 16 52 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 53 H 0.07 2.53 7.27 -2.39 -0.02 2.51 16 54 H 0.10 2.67 8.11 -2.39 -0.02 2.65 16 Total: -1.00 -83.30 406.70 0.04 -83.25 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.18 Total: 32.29 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.26 Total: 11.15 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -7.29 Total: -138.98 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.13 Total: -38.32 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -83.30 0.04 -83.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634873.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.352 kcal (2) G-P(sol) polarization free energy of solvation -83.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds