Wall clock time and date at job start Tue Mar 31 2020 23:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46835 * 2 1 4 4 H 1.08997 * 109.47654 * 58.37164 * 3 2 1 5 5 C 1.50703 * 109.46788 * 178.37519 * 3 2 1 6 6 O 1.21282 * 120.00041 * 101.74916 * 5 3 2 7 7 N 1.34775 * 119.99838 * 281.74289 * 5 3 2 8 8 C 1.43589 * 116.25476 * 357.76199 * 7 5 3 9 9 C 1.51978 * 111.25175 * 204.21068 * 8 7 5 10 10 O 1.41314 * 111.54056 * 318.85642 * 9 8 7 11 11 C 1.40788 * 118.40195 * 56.94166 * 10 9 8 12 12 H 1.08996 * 109.35328 * 188.31058 * 11 10 9 13 13 C 1.54199 * 110.22494 * 67.70177 * 11 10 9 14 14 N 1.46881 * 106.39316 * 210.34193 * 13 11 10 15 15 C 1.36934 * 125.36123 * 197.84632 * 14 13 11 16 16 H 1.08005 * 119.99977 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00437 * 359.97438 * 15 14 13 18 18 N 1.31617 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00191 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47253 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46965 * 120.00317 * 19 17 15 22 22 H 1.48500 * 109.47245 * 240.00108 * 19 17 15 23 23 C 1.46781 * 109.27147 * 17.84020 * 14 13 11 24 24 C 1.44545 * 117.32110 * 176.92498 * 7 5 3 25 25 H 1.09000 * 109.49196 * 285.88014 * 24 7 5 26 26 N 1.46902 * 109.47305 * 298.36989 * 3 2 1 27 27 C 1.46896 * 111.00215 * 181.19140 * 26 3 2 28 28 C 1.52991 * 109.47423 * 293.36042 * 27 26 3 29 29 C 1.46903 * 110.99962 * 305.15079 * 26 3 2 30 30 C 1.52997 * 109.46969 * 168.53864 * 29 26 3 31 31 H 1.08994 * 109.47140 * 65.06548 * 1 2 3 32 32 H 1.08998 * 109.47059 * 185.07097 * 1 2 3 33 33 H 1.09000 * 109.46896 * 305.06705 * 1 2 3 34 34 H 1.08993 * 109.46960 * 239.99749 * 2 1 3 35 35 H 1.08998 * 109.47162 * 119.99633 * 2 1 3 36 36 H 1.09006 * 109.68824 * 83.53643 * 8 7 5 37 37 H 1.08999 * 108.88241 * 324.35522 * 8 7 5 38 38 H 1.09009 * 109.06191 * 198.32921 * 9 8 7 39 39 H 1.08999 * 109.06686 * 79.39505 * 9 8 7 40 40 H 1.08999 * 110.07484 * 91.10872 * 13 11 10 41 41 H 1.09001 * 110.11805 * 329.59651 * 13 11 10 42 42 H 0.97001 * 120.00309 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.83140 * 239.35790 * 23 14 13 44 44 H 1.09000 * 109.82580 * 118.39207 * 23 14 13 45 45 H 1.09002 * 109.46954 * 53.36297 * 27 26 3 46 46 H 1.09006 * 109.46772 * 173.35736 * 27 26 3 47 47 H 1.09006 * 109.47289 * 65.59830 * 28 27 26 48 48 H 1.09005 * 109.47464 * 185.60416 * 28 27 26 49 49 H 1.09004 * 109.47497 * 305.60287 * 28 27 26 50 50 H 1.08997 * 109.47076 * 288.53953 * 29 26 3 51 51 H 1.09001 * 109.47170 * 48.54204 * 29 26 3 52 52 H 1.09001 * 109.47287 * 185.85192 * 30 29 26 53 53 H 1.08999 * 109.47616 * 305.85746 * 30 29 26 54 54 H 1.09005 * 109.47018 * 65.85510 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6530 1.9648 0.8750 5 6 3.5465 1.4427 0.0403 6 8 4.1802 1.6469 -0.9734 7 7 4.1895 1.2160 1.2029 8 6 3.3614 1.0334 2.3616 9 6 4.1153 1.3737 3.6366 10 8 5.4428 0.8908 3.5990 11 6 6.2754 1.3023 2.5410 12 1 7.2056 0.7350 2.5717 13 6 6.5827 2.8087 2.6593 14 7 6.7685 3.3028 1.2886 15 6 7.3844 4.4769 0.9461 16 1 7.4741 4.7564 -0.0933 17 6 7.8934 5.3079 1.9347 18 7 7.7844 4.9670 3.2013 19 14 8.7329 6.9098 1.4675 20 1 8.7253 7.0601 -0.0099 21 1 8.0053 8.0481 2.0841 22 1 10.1349 6.8951 1.9568 23 6 6.1901 2.3398 0.3439 24 6 5.6333 1.1616 1.1627 25 1 5.9494 0.2224 0.7088 26 7 1.5827 2.1236 -1.2187 27 6 2.0781 3.5057 -1.2668 28 6 1.4293 4.3193 -0.1453 29 6 1.9831 1.3786 -2.4198 30 6 1.2573 1.9497 -3.6396 31 1 -0.3633 0.4332 -0.9318 32 1 -0.3633 -1.0236 0.0908 33 1 -0.3633 0.5904 0.8411 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.0257 -0.0023 2.4136 37 1 2.4911 1.6846 2.2794 38 1 3.5979 0.9275 4.4860 39 1 4.1336 2.4564 3.7613 40 1 7.4936 2.9604 3.2383 41 1 5.7481 3.3254 3.1333 42 1 8.1404 5.5475 3.8922 43 1 6.9609 1.9835 -0.3394 44 1 5.3849 2.8120 -0.2189 45 1 3.1605 3.5083 -1.1382 46 1 1.8255 3.9488 -2.2302 47 1 1.7616 3.9372 0.8199 48 1 1.7191 5.3658 -0.2412 49 1 0.3448 4.2349 -0.2157 50 1 3.0599 1.4701 -2.5619 51 1 1.7204 0.3276 -2.2999 52 1 1.4730 1.3333 -4.5123 53 1 0.1832 1.9539 -3.4543 54 1 1.5986 2.9688 -3.8213 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218624940.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:24 Heat of formation + Delta-G solvation = -34.912365 kcal Electronic energy + Delta-G solvation = -33643.678457 eV Core-core repulsion = 29616.920947 eV Total energy + Delta-G solvation = -4026.757510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.59316 -40.62200 -38.34230 -37.65915 -36.41372 -34.68687 -34.10713 -32.78447 -31.73872 -30.21912 -29.57255 -29.16161 -27.25569 -26.30955 -24.73999 -24.15615 -23.13571 -22.86316 -21.96294 -20.70691 -19.83894 -19.15571 -18.37481 -18.24621 -17.29617 -16.97682 -16.90525 -16.61428 -16.20387 -16.18486 -15.70681 -15.62207 -15.38232 -15.03240 -14.80636 -14.52763 -14.23437 -14.09990 -13.98506 -13.68598 -13.56956 -13.13188 -13.12151 -13.05642 -12.96004 -12.79870 -12.76962 -12.47774 -12.39079 -12.32264 -12.25609 -12.11948 -12.08555 -11.89166 -11.78388 -11.68943 -11.54057 -11.29665 -11.02576 -10.81414 -10.56817 -9.57350 -9.16994 -8.88893 -7.87947 -5.29797 1.40513 1.41376 1.49613 1.52376 1.82277 2.42272 2.71340 2.83475 3.23483 3.30096 3.55392 3.68583 3.74651 3.77791 3.87594 3.93614 4.01806 4.08856 4.16037 4.29632 4.34532 4.35626 4.40952 4.45211 4.51311 4.55023 4.62605 4.66133 4.68757 4.72624 4.83094 4.85204 4.91329 4.97603 5.00147 5.04010 5.10614 5.18049 5.22772 5.27462 5.31073 5.33783 5.40414 5.43892 5.59792 5.62011 5.64226 5.93650 6.05070 6.16197 6.24312 6.39525 7.02390 7.12405 7.68710 8.30075 9.16483 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004386 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.739916 B = 6382.610154 C = 7642.875694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C 0.068 3.932 4 H 0.118 0.882 5 C 0.472 3.528 6 O -0.557 6.557 7 N -0.589 5.589 8 C 0.071 3.929 9 C 0.048 3.952 10 O -0.372 6.372 11 C 0.085 3.915 12 H 0.120 0.880 13 C 0.153 3.847 14 N -0.620 5.620 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.058 4.058 18 N -0.945 5.945 19 Si 0.979 3.021 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.285 1.285 23 C 0.129 3.871 24 C 0.126 3.874 25 H 0.083 0.917 26 N -0.491 5.491 27 C 0.038 3.962 28 C -0.140 4.140 29 C 0.027 3.973 30 C -0.138 4.138 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.029 0.971 40 H 0.062 0.938 41 H -0.006 1.006 42 H 0.249 0.751 43 H 0.017 0.983 44 H 0.047 0.953 45 H 0.013 0.987 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.054 0.946 49 H 0.082 0.918 50 H 0.040 0.960 51 H 0.085 0.915 52 H 0.065 0.935 53 H 0.069 0.931 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.516 -12.050 -3.657 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C -0.044 4.044 4 H 0.135 0.865 5 C 0.261 3.739 6 O -0.436 6.436 7 N -0.323 5.323 8 C -0.051 4.051 9 C -0.028 4.028 10 O -0.289 6.289 11 C 0.025 3.975 12 H 0.137 0.863 13 C 0.027 3.973 14 N -0.348 5.348 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.251 4.251 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.003 3.997 24 C 0.021 3.979 25 H 0.101 0.899 26 N -0.214 5.214 27 C -0.090 4.090 28 C -0.197 4.197 29 C -0.100 4.100 30 C -0.196 4.196 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.166 0.834 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.012 0.988 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.031 0.969 46 H 0.099 0.901 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.058 0.942 51 H 0.103 0.897 52 H 0.084 0.916 53 H 0.088 0.912 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.535 -11.893 -3.914 22.368 hybrid contribution 1.996 1.539 -0.353 2.545 sum -16.539 -10.354 -4.267 19.974 Atomic orbital electron populations 1.21581 0.92445 1.02064 1.02882 1.21630 0.98730 0.91294 1.03163 1.22259 0.86345 0.99293 0.96500 0.86475 1.22843 0.92989 0.75340 0.82736 1.90592 1.69252 1.49071 1.34702 1.46689 1.05071 1.70889 1.09637 1.21843 0.94006 1.04283 0.85017 1.22594 0.82270 0.99164 0.98807 1.86859 1.23520 1.71688 1.46790 1.22688 0.93277 0.96660 0.84847 0.86273 1.21753 0.99268 0.89564 0.86670 1.44512 1.67232 1.20894 1.02136 1.19360 1.29368 0.95793 0.92695 0.91073 1.25593 1.02058 1.02232 0.95240 1.70109 1.51716 1.38386 0.99226 0.85005 0.77744 0.78939 0.77598 1.19649 1.21525 1.21206 1.21773 0.95620 0.89967 0.92298 1.21287 0.81080 0.98261 0.97309 0.89930 1.62704 1.55981 1.01476 1.01265 1.22211 0.96762 0.89439 1.00608 1.21718 1.02079 0.98913 0.97001 1.22445 0.99098 0.98455 0.90007 1.21727 1.01108 1.00327 0.96439 0.92294 0.91573 0.91871 0.91845 0.89699 0.87869 0.87970 0.83445 0.95229 0.92018 0.98848 0.94128 0.96494 0.93573 0.96855 0.90083 0.94062 0.92717 0.89912 0.94193 0.89728 0.91556 0.91220 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.70 71.98 0.70 -0.96 16 2 C -0.11 -1.80 4.88 30.60 0.15 -1.65 16 3 C 0.07 1.52 1.25 44.17 0.06 1.58 16 4 H 0.12 2.36 4.62 -2.39 -0.01 2.35 16 5 C 0.47 14.66 5.35 87.66 0.47 15.13 16 6 O -0.56 -21.42 9.13 -3.03 -0.03 -21.45 16 7 N -0.59 -18.28 3.05 -810.26 -2.47 -20.75 16 8 C 0.07 1.58 5.35 86.58 0.46 2.05 16 9 C 0.05 1.27 6.73 71.65 0.48 1.75 16 10 O -0.37 -12.61 10.25 -145.85 -1.49 -14.10 16 11 C 0.08 3.34 3.91 30.90 0.12 3.46 16 12 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 13 C 0.15 7.81 5.26 86.71 0.46 8.27 16 14 N -0.62 -34.02 3.39 -696.22 -2.36 -36.38 16 15 C -0.24 -14.48 10.25 84.03 0.86 -13.62 16 16 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.06 -3.40 5.48 84.86 0.47 -2.94 16 18 N -0.95 -57.36 10.18 21.65 0.22 -57.14 16 19 Si 0.98 47.17 29.55 68.60 2.03 49.19 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 C 0.13 6.09 6.08 86.63 0.53 6.62 16 24 C 0.13 4.74 3.38 45.56 0.15 4.89 16 25 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 26 N -0.49 -11.53 3.93 -875.39 -3.44 -14.97 16 27 C 0.04 1.05 5.24 86.30 0.45 1.50 16 28 C -0.14 -3.39 9.71 71.98 0.70 -2.70 16 29 C 0.03 0.65 4.90 86.30 0.42 1.07 16 30 C -0.14 -2.73 9.75 71.98 0.70 -2.03 16 31 H 0.06 0.85 7.81 -2.39 -0.02 0.83 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.16 6.00 -2.39 -0.01 1.15 16 35 H 0.08 1.17 6.29 -2.39 -0.02 1.15 16 36 H 0.10 1.63 6.86 -2.38 -0.02 1.62 16 37 H 0.10 1.88 5.74 -2.39 -0.01 1.87 16 38 H 0.15 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.03 0.96 6.73 -2.39 -0.02 0.94 16 40 H 0.06 3.59 6.25 -2.39 -0.01 3.57 16 41 H -0.01 -0.35 6.48 -2.39 -0.02 -0.37 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 2.36 5.15 -2.39 -0.01 2.35 16 45 H 0.01 0.49 5.80 -2.39 -0.01 0.48 16 46 H 0.08 2.12 6.25 -2.38 -0.01 2.11 16 47 H 0.04 1.05 6.87 -2.38 -0.02 1.03 16 48 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.04 1.26 5.60 -2.39 -0.01 1.25 16 51 H 0.08 1.79 5.57 -2.39 -0.01 1.77 16 52 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.04 0.91 6.66 -2.38 -0.02 0.90 16 Total: -1.00 -73.12 384.27 0.53 -72.59 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.90 Total: 20.58 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 7.18 Total: 22.43 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -8.05 Total: -129.24 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.52 Total: -35.55 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -73.12 0.53 -72.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218624940.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.678 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds