Wall clock time and date at job start Tue Mar 31 2020 22:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 304.99671 * 3 2 1 5 5 C 1.53000 * 109.47341 * 64.99479 * 3 2 1 6 6 C 1.53001 * 109.47328 * 184.99912 * 3 2 1 7 7 H 1.09002 * 109.46786 * 300.00010 * 6 3 2 8 8 C 1.52997 * 109.47328 * 179.97438 * 6 3 2 9 9 C 1.50699 * 109.46984 * 59.99696 * 6 3 2 10 10 O 1.21277 * 120.00338 * 0.02562 * 9 6 3 11 11 N 1.34782 * 119.99782 * 180.02562 * 9 6 3 12 12 C 1.46500 * 119.99750 * 179.97438 * 11 9 6 13 13 C 1.53119 * 109.52565 * 274.68747 * 12 11 9 14 14 C 1.53038 * 109.28073 * 182.44511 * 13 12 11 15 15 N 1.46843 * 109.52314 * 59.17229 * 14 13 12 16 16 C 1.46906 * 111.00138 * 174.16604 * 15 14 13 17 17 C 1.50705 * 109.46766 * 294.21492 * 16 15 14 18 18 O 1.21297 * 119.99866 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99844 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99741 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00229 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00102 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99373 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00350 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46998 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47301 * 120.00402 * 24 22 20 27 27 H 1.48501 * 109.47456 * 240.00395 * 24 22 20 28 28 C 1.46847 * 111.20217 * 298.25907 * 15 14 13 29 29 C 1.53038 * 109.52072 * 61.74497 * 28 15 14 30 30 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 34 34 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 35 35 H 1.09002 * 109.46818 * 59.99962 * 5 3 2 36 36 H 1.08999 * 109.47412 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.47725 * 300.00215 * 5 3 2 38 38 H 1.08998 * 109.46963 * 60.00165 * 8 6 3 39 39 H 1.09003 * 109.47101 * 179.97438 * 8 6 3 40 40 H 1.09002 * 109.47196 * 299.99760 * 8 6 3 41 41 H 0.96999 * 119.99879 * 0.02562 * 11 9 6 42 42 H 1.08999 * 109.52379 * 34.87761 * 12 11 9 43 43 H 1.09008 * 109.49732 * 302.38016 * 13 12 11 44 44 H 1.08993 * 109.50535 * 62.49721 * 13 12 11 45 45 H 1.09005 * 109.45450 * 299.16277 * 14 13 12 46 46 H 1.08997 * 109.45508 * 179.18945 * 14 13 12 47 47 H 1.08997 * 109.46991 * 54.20821 * 16 15 14 48 48 H 1.08996 * 109.47316 * 174.21075 * 16 15 14 49 49 H 0.97000 * 120.00158 * 359.97438 * 19 17 16 50 50 H 0.97005 * 119.98988 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.46728 * 301.73135 * 28 15 14 52 52 H 1.09005 * 109.45467 * 181.75411 * 28 15 14 53 53 H 1.08996 * 109.50572 * 180.87991 * 29 28 15 54 54 H 1.09008 * 109.50742 * 60.76115 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4444 -0.1257 7 1 3.9995 0.9053 0.7162 8 6 4.0748 2.8868 -0.1263 9 6 3.9636 0.7705 -1.4133 10 8 3.1120 0.3324 -2.1575 11 7 5.2666 0.6548 -1.7380 12 6 5.6542 -0.0007 -2.9895 13 6 5.7331 -1.5142 -2.7713 14 6 6.1973 -2.1877 -4.0648 15 7 7.5135 -1.6608 -4.4474 16 6 8.0527 -2.3829 -5.6076 17 6 8.3307 -3.8135 -5.2240 18 8 8.1025 -4.1940 -4.0951 19 7 8.8337 -4.6699 -6.1351 20 6 9.0871 -5.9712 -5.7859 21 1 8.8840 -6.3100 -4.7808 22 6 9.6052 -6.8543 -6.7253 23 7 9.8528 -6.4419 -7.9483 24 14 9.9512 -8.6272 -6.2495 25 1 9.5891 -8.8370 -4.8246 26 1 9.1444 -9.5355 -7.1037 27 1 11.3945 -8.9189 -6.4420 28 6 7.4522 -0.2170 -4.7083 29 6 7.0256 0.5152 -3.4340 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 2.0698 1.5876 2.1491 36 1 1.9989 3.1541 1.3075 37 1 0.5490 2.1253 1.3969 38 1 3.7865 3.3745 0.8048 39 1 5.1612 2.8881 -0.2154 40 1 3.6402 3.4255 -0.9684 41 1 5.9477 1.0049 -1.1427 42 1 4.9151 0.2191 -3.7599 43 1 6.4437 -1.7302 -1.9734 44 1 4.7493 -1.8940 -2.4960 45 1 5.4792 -1.9826 -4.8588 46 1 6.2683 -3.2641 -3.9084 47 1 7.3263 -2.3592 -6.4199 48 1 8.9779 -1.9077 -5.9335 49 1 9.0165 -4.3655 -7.0378 50 1 10.2149 -7.0583 -8.6039 51 1 6.7283 -0.0212 -5.4993 52 1 8.4349 0.1377 -5.0193 53 1 6.9651 1.5853 -3.6321 54 1 7.7564 0.3311 -2.6464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229775143.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:49 Heat of formation + Delta-G solvation = -115.877757 kcal Electronic energy + Delta-G solvation = -30220.832110 eV Core-core repulsion = 26190.563677 eV Total energy + Delta-G solvation = -4030.268433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42460 -40.53797 -39.22770 -37.52661 -36.18019 -35.71424 -33.76505 -33.26575 -32.19270 -31.82310 -29.51958 -28.55907 -26.78783 -26.30418 -24.44050 -24.22359 -23.18284 -21.45732 -21.22683 -20.99677 -20.34226 -19.87249 -18.22512 -17.68952 -17.41345 -16.75112 -16.50008 -16.35584 -16.03432 -15.99757 -15.70300 -15.44269 -15.35730 -14.95368 -14.75081 -14.46049 -14.31796 -14.15951 -13.77426 -13.59631 -13.51113 -13.44836 -13.18678 -13.00597 -12.95321 -12.79963 -12.55425 -12.44435 -12.41538 -12.36660 -12.26396 -12.19201 -12.11580 -11.87347 -11.60368 -11.50958 -11.45067 -11.42366 -11.27317 -10.43049 -10.28453 -10.02258 -9.93544 -9.21019 -8.46593 -5.94791 1.35827 1.40842 1.55021 1.70125 2.06115 2.21492 2.28271 2.76334 3.20234 3.37910 3.64503 3.72018 3.84710 3.87135 3.94054 4.08196 4.19446 4.21768 4.29576 4.36630 4.41444 4.45620 4.47582 4.52525 4.55754 4.58581 4.64641 4.64975 4.74677 4.75245 4.80979 4.91741 4.97652 4.98699 5.03292 5.09306 5.11537 5.11887 5.15626 5.21058 5.29936 5.32949 5.37948 5.41347 5.50960 5.58628 5.68129 5.88950 6.07443 6.24626 6.61376 6.63289 7.13706 7.34694 7.57415 8.13538 8.71081 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.001958 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.267790 B =14298.553922 C =15202.847847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C -0.068 4.068 4 H 0.057 0.943 5 C -0.145 4.145 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.141 4.141 9 C 0.510 3.490 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.152 3.848 13 C -0.109 4.109 14 C 0.061 3.939 15 N -0.530 5.530 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.054 3.946 29 C -0.109 4.109 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.414 0.586 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.024 0.976 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.116 0.884 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.039 0.961 52 H 0.099 0.901 53 H 0.101 0.899 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 23.365 14.179 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.202 4.202 6 C -0.124 4.124 7 H 0.129 0.871 8 C -0.199 4.199 9 C 0.298 3.702 10 O -0.455 6.455 11 N -0.365 5.365 12 C 0.047 3.953 13 C -0.148 4.148 14 C -0.068 4.068 15 N -0.255 5.255 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.073 4.073 29 C -0.147 4.147 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.251 0.749 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.134 0.866 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.057 0.943 52 H 0.117 0.883 53 H 0.119 0.881 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.078 22.652 14.631 29.154 hybrid contribution -0.045 -1.156 -1.151 1.631 sum -11.123 21.497 13.480 27.705 Atomic orbital electron populations 1.21747 0.95613 1.01270 1.01733 1.21800 0.96509 0.97106 1.01820 1.20910 0.92635 0.96149 0.99036 0.92409 1.21925 1.01786 1.00886 0.95651 1.21439 0.97772 0.98773 0.94415 0.87085 1.21842 1.01892 0.92525 1.03601 1.21318 0.82097 0.78289 0.88459 1.90644 1.50892 1.50348 1.53643 1.46015 1.07701 1.59595 1.23144 1.20855 0.97154 0.90773 0.86527 1.21765 0.99940 0.95769 0.97301 1.22006 0.88303 1.00144 0.96321 1.61524 1.24855 1.03766 1.35339 1.21734 1.02008 0.91245 0.92415 1.20815 0.82237 0.88600 0.85541 1.90465 1.57673 1.79553 1.22275 1.41944 1.57021 1.09544 1.12795 1.19673 1.41326 0.86758 0.98196 0.90423 1.26034 0.96514 1.04063 0.94821 1.69685 1.44786 1.37905 1.03822 0.84878 0.78286 0.77050 0.78160 1.19892 1.19721 1.19492 1.22215 1.02390 0.85707 0.97023 1.21792 0.94538 1.00441 0.97970 0.93692 0.93420 0.91341 0.92374 0.92392 0.91936 0.91031 0.92163 0.89362 0.90655 0.92981 0.74889 0.91462 0.91622 0.93163 0.95765 0.92100 0.91917 0.86581 0.77037 0.91359 0.94262 0.88268 0.88064 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.67 71.98 0.70 -1.88 16 2 C -0.13 -2.66 5.14 30.60 0.16 -2.50 16 3 C -0.07 -1.07 1.61 -10.79 -0.02 -1.08 16 4 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 5 C -0.15 -1.47 8.60 71.98 0.62 -0.85 16 6 C -0.10 -1.39 2.32 -11.54 -0.03 -1.42 16 7 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 8 C -0.14 -1.17 8.74 71.98 0.63 -0.55 16 9 C 0.51 10.69 6.80 87.66 0.60 11.29 16 10 O -0.58 -17.26 13.33 -3.02 -0.04 -17.30 16 11 N -0.71 -12.55 4.97 -442.15 -2.20 -14.75 16 12 C 0.15 3.41 2.52 45.07 0.11 3.53 16 13 C -0.11 -3.22 5.67 30.65 0.17 -3.04 16 14 C 0.06 2.12 5.10 86.33 0.44 2.56 16 15 N -0.53 -17.08 4.40 -900.91 -3.96 -21.05 16 16 C 0.06 2.00 5.45 85.56 0.47 2.46 16 17 C 0.44 21.29 7.46 87.66 0.65 21.94 16 18 O -0.61 -34.30 13.90 -3.08 -0.04 -34.34 16 19 N -0.58 -29.95 5.29 -306.97 -1.62 -31.57 16 20 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 23 N -0.92 -50.21 13.05 21.67 0.28 -49.93 16 24 Si 0.99 43.61 29.55 68.60 2.03 45.63 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 C 0.05 1.20 5.46 86.33 0.47 1.67 16 29 C -0.11 -1.94 5.57 30.65 0.17 -1.77 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.94 6.56 -2.39 -0.02 0.93 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.56 5.42 -2.39 -0.01 1.54 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.52 6.43 -2.39 -0.02 0.51 16 37 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 38 H 0.09 0.46 6.43 -2.39 -0.02 0.44 16 39 H 0.07 0.41 7.57 -2.39 -0.02 0.39 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.41 4.64 8.03 -92.71 -0.74 3.89 16 42 H 0.07 1.77 7.58 -2.39 -0.02 1.76 16 43 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.06 2.68 5.78 -2.39 -0.01 2.67 16 47 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 48 H 0.12 3.45 7.99 -2.39 -0.02 3.43 16 49 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 50 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 51 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.10 1.84 8.02 -2.38 -0.02 1.82 16 53 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 54 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -73.82 414.75 0.29 -73.53 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.58 Total: 37.91 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.42 Total: 11.86 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -7.50 Total: -117.29 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.08 Total: -51.64 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.82 0.29 -73.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229775143.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.348 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds