Wall clock time and date at job start Tue Mar 31 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 H 1.09003 * 109.46865 * 182.76715 * 3 2 1 5 5 C 1.50704 * 109.46786 * 62.77368 * 3 2 1 6 6 H 1.08002 * 119.99735 * 274.94192 * 5 3 2 7 7 C 1.37877 * 120.00463 * 94.93963 * 5 3 2 8 8 N 1.31509 * 120.00068 * 183.78610 * 7 5 3 9 9 Si 1.86799 * 119.99441 * 3.78989 * 7 5 3 10 10 H 1.48506 * 109.47323 * 87.15002 * 9 7 5 11 11 H 1.48498 * 109.47022 * 207.14622 * 9 7 5 12 12 H 1.48504 * 109.47537 * 327.14726 * 9 7 5 13 13 N 1.46899 * 109.47261 * 302.77125 * 3 2 1 14 14 C 1.46520 * 111.00159 * 295.59026 * 13 3 2 15 15 C 1.53341 * 107.27662 * 173.02261 * 14 13 3 16 16 C 1.52463 * 108.48767 * 68.83894 * 15 14 13 17 17 H 1.09005 * 109.89069 * 75.21748 * 16 15 14 18 18 C 1.54241 * 108.81428 * 195.59584 * 16 15 14 19 19 O 1.43220 * 107.55752 * 125.45519 * 18 16 15 20 20 C 1.43567 * 108.89435 * 338.71690 * 19 18 16 21 21 H 1.08997 * 110.22888 * 270.62064 * 20 19 18 22 22 C 1.53007 * 110.22201 * 148.76376 * 20 19 18 23 23 N 1.46497 * 109.47182 * 66.45422 * 22 20 19 24 24 C 1.34778 * 119.99556 * 179.97438 * 23 22 20 25 25 O 1.21588 * 120.00294 * 359.97438 * 24 23 22 26 26 N 1.34780 * 119.99369 * 180.02562 * 24 23 22 27 27 C 1.46506 * 119.99788 * 180.02562 * 26 24 23 28 28 C 1.46490 * 120.00255 * 359.97438 * 26 24 23 29 29 C 1.51918 * 113.25301 * 311.89833 * 16 15 14 30 30 H 1.09004 * 107.02472 * 141.63978 * 29 16 15 31 31 C 1.44548 * 110.99848 * 167.90657 * 13 3 2 32 32 H 1.08994 * 109.46960 * 304.02039 * 1 2 3 33 33 H 1.08995 * 109.47061 * 64.02446 * 1 2 3 34 34 H 1.09004 * 109.46797 * 184.02104 * 1 2 3 35 35 H 1.08999 * 109.47254 * 240.00334 * 2 1 3 36 36 H 1.09002 * 109.47191 * 120.00060 * 2 1 3 37 37 H 0.97000 * 119.99660 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.89563 * 53.58015 * 14 13 3 39 39 H 1.09002 * 109.89583 * 292.46654 * 14 13 3 40 40 H 1.08999 * 109.63498 * 309.13890 * 15 14 13 41 41 H 1.09002 * 109.63466 * 188.53719 * 15 14 13 42 42 H 1.08998 * 109.83332 * 5.95887 * 18 16 15 43 43 H 1.08990 * 109.92146 * 245.00812 * 18 16 15 44 44 H 1.08997 * 109.47174 * 306.44932 * 22 20 19 45 45 H 1.09001 * 109.46693 * 186.45540 * 22 20 19 46 46 H 0.96993 * 120.00187 * 359.97438 * 23 22 20 47 47 H 1.08997 * 109.47250 * 89.99246 * 27 26 24 48 48 H 1.08999 * 109.47134 * 210.00155 * 27 26 24 49 49 H 1.09009 * 109.46619 * 329.99593 * 27 26 24 50 50 H 1.09002 * 109.47249 * 60.00449 * 28 26 24 51 51 H 1.09000 * 109.47200 * 179.97438 * 28 26 24 52 52 H 1.08996 * 109.47804 * 300.00259 * 28 26 24 53 53 H 1.08994 * 107.61320 * 281.25592 * 31 13 3 54 54 H 1.08996 * 107.61354 * 36.67337 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0496 5 6 1.5945 2.1328 1.2635 6 1 0.6168 2.5887 1.3137 7 6 2.4351 2.1821 2.3553 8 7 2.0191 2.7185 3.4816 9 14 4.1648 1.4872 2.2343 10 1 5.0833 2.5329 1.7163 11 1 4.6186 1.0522 3.5797 12 1 4.1677 0.3242 1.3109 13 7 1.4964 2.1541 -1.1645 14 6 1.9940 1.5731 -2.4142 15 6 1.2445 2.2564 -3.5643 16 6 1.6999 3.7093 -3.6424 17 1 2.6947 3.7628 -4.0850 18 6 0.6970 4.4992 -4.5080 19 8 0.2440 5.6158 -3.7340 20 6 0.4641 5.3372 -2.3429 21 1 -0.4038 4.8333 -1.9176 22 6 0.7473 6.6341 -1.5821 23 7 -0.4533 7.4736 -1.5842 24 6 -0.4382 8.6725 -0.9685 25 8 0.5716 9.0570 -0.4110 26 7 -1.5429 9.4446 -0.9699 27 6 -1.5265 10.7480 -0.3012 28 6 -2.7597 8.9810 -1.6411 29 6 1.6947 4.4128 -2.2959 30 1 2.5719 5.0593 -2.2702 31 6 1.7198 3.5778 -1.0523 32 1 -0.3633 0.5749 0.8517 33 1 -0.3633 0.4501 -0.9238 34 1 -0.3633 -1.0252 0.0721 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.6106 2.7535 4.2496 38 1 1.7977 0.5010 -2.4288 39 1 3.0643 1.7564 -2.5082 40 1 0.1715 2.2186 -3.3759 41 1 1.4727 1.7501 -4.5022 42 1 -0.1484 3.8624 -4.7684 43 1 1.1870 4.8524 -5.4152 44 1 1.5649 7.1681 -2.0662 45 1 1.0248 6.3993 -0.5545 46 1 -1.2589 7.1667 -2.0286 47 1 -1.2109 11.5151 -1.0082 48 1 -2.5262 10.9808 0.0656 49 1 -0.8300 10.7175 0.5369 50 1 -3.0918 8.0472 -1.1873 51 1 -3.5414 9.7334 -1.5366 52 1 -2.5517 8.8172 -2.6984 53 1 0.9700 3.9764 -0.3690 54 1 2.6943 3.7230 -0.5862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167839.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:27 Heat of formation + Delta-G solvation = -87.877187 kcal Electronic energy + Delta-G solvation = -31878.332499 eV Core-core repulsion = 27849.278262 eV Total energy + Delta-G solvation = -4029.054237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75869 -41.02316 -39.05292 -36.62169 -36.16610 -35.74749 -34.08304 -33.29823 -32.35113 -30.29863 -29.04664 -28.53933 -27.23803 -26.28407 -25.27013 -23.95359 -23.69884 -22.61946 -21.34762 -20.92559 -19.61288 -19.07150 -18.83466 -17.89458 -17.33850 -17.20094 -16.73523 -16.59537 -16.47921 -15.94817 -15.52226 -15.31631 -15.18222 -14.97361 -14.79597 -14.66187 -14.47019 -14.24171 -14.09759 -13.84997 -13.58516 -13.51687 -13.44033 -13.18120 -13.15617 -12.95532 -12.79750 -12.57929 -12.55203 -12.39788 -11.96044 -11.92985 -11.77810 -11.57730 -11.54989 -11.47318 -11.30109 -11.04689 -10.72347 -10.70898 -10.56585 -10.31697 -9.55667 -8.77143 -8.26929 -6.27644 1.27328 1.30229 1.39033 1.61632 2.04877 2.31298 2.70576 2.99044 3.01414 3.22443 3.51173 3.55987 3.79402 3.95402 4.10042 4.15030 4.22809 4.28689 4.40561 4.44110 4.44814 4.48868 4.53182 4.57115 4.60263 4.65297 4.69515 4.74271 4.79275 4.83813 4.87094 4.90126 4.94631 4.97361 4.99073 5.06126 5.08995 5.16539 5.26082 5.29248 5.37478 5.40622 5.45091 5.47906 5.50722 5.73823 5.80596 5.86128 5.98342 6.16149 6.50402 6.78335 6.87579 6.89588 7.38063 7.46922 8.89566 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.003665 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.566393 B = 7638.778752 C = 9277.060705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C 0.189 3.811 4 H -0.010 1.010 5 C -0.484 4.484 6 H 0.040 0.960 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.925 3.075 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.243 1.243 13 N -0.533 5.533 14 C 0.048 3.952 15 C -0.097 4.097 16 C -0.107 4.107 17 H 0.094 0.906 18 C 0.058 3.942 19 O -0.382 6.382 20 C 0.096 3.904 21 H 0.077 0.923 22 C 0.148 3.852 23 N -0.726 5.726 24 C 0.692 3.308 25 O -0.642 6.642 26 N -0.639 5.639 27 C 0.100 3.900 28 C 0.072 3.928 29 C -0.102 4.102 30 H 0.069 0.931 31 C 0.108 3.892 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.411 0.589 47 H 0.059 0.941 48 H 0.103 0.897 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.110 0.890 52 H 0.069 0.931 53 H 0.046 0.954 54 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 5.643 -19.543 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.144 4.144 3 C 0.082 3.918 4 H 0.008 0.992 5 C -0.523 4.523 6 H 0.058 0.942 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.750 3.250 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.167 1.167 13 N -0.258 5.258 14 C -0.080 4.080 15 C -0.134 4.134 16 C -0.126 4.126 17 H 0.112 0.888 18 C -0.018 4.018 19 O -0.302 6.302 20 C 0.037 3.963 21 H 0.095 0.905 22 C 0.023 3.977 23 N -0.382 5.382 24 C 0.393 3.607 25 O -0.524 6.524 26 N -0.376 5.376 27 C -0.043 4.043 28 C -0.070 4.070 29 C -0.122 4.122 30 H 0.087 0.913 31 C -0.021 4.021 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.249 0.751 47 H 0.077 0.923 48 H 0.122 0.878 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.128 0.872 52 H 0.088 0.912 53 H 0.065 0.935 54 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -8.085 6.110 -19.059 21.585 hybrid contribution 1.723 -0.124 1.111 2.054 sum -6.362 5.985 -17.948 19.961 Atomic orbital electron populations 1.21343 0.94961 0.99443 1.01416 1.21602 0.97632 0.95869 0.99289 1.19660 0.91331 0.92409 0.88411 0.99245 1.21000 1.01388 1.33910 0.95986 0.94174 1.25726 1.01741 0.95634 0.95099 1.70032 1.37874 1.47695 1.03092 0.86078 0.81193 0.80081 0.77641 1.20535 1.21453 1.16678 1.60397 1.61323 1.01764 1.02365 1.22235 0.96080 0.99921 0.89739 1.21613 1.00613 0.93092 0.98102 1.21841 1.01199 0.96581 0.92978 0.88816 1.23463 0.96772 0.87229 0.94378 1.88428 1.84120 1.41591 1.16044 1.22857 0.97544 0.92983 0.82885 0.90526 1.21234 0.87397 0.89743 0.99354 1.44892 1.16526 1.17742 1.59039 1.16205 0.83801 0.81138 0.79570 1.90885 1.34218 1.74940 1.52353 1.47061 1.11783 1.20070 1.58728 1.21678 1.03756 0.81919 0.96916 1.22020 0.85831 1.01918 0.97228 1.21276 0.98573 0.96925 0.95441 0.91273 1.20189 0.98424 0.88721 0.94766 0.95305 0.92006 0.93300 0.92138 0.94494 0.92881 0.89616 0.96218 0.90951 0.88376 0.90479 0.88306 0.91800 0.92553 0.75129 0.92260 0.87837 0.93179 0.91844 0.87185 0.91245 0.93542 0.98728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 9.52 71.98 0.69 -3.53 16 2 C -0.11 -4.14 5.38 30.60 0.16 -3.97 16 3 C 0.19 8.41 1.24 44.17 0.05 8.47 16 4 H -0.01 -0.46 5.29 -2.39 -0.01 -0.47 16 5 C -0.48 -26.55 6.36 25.60 0.16 -26.39 16 6 H 0.04 2.49 7.61 -2.91 -0.02 2.47 16 7 C 0.02 0.88 5.47 84.66 0.46 1.34 16 8 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 9 Si 0.92 44.61 27.03 68.60 1.85 46.46 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.24 -10.75 6.76 99.48 0.67 -10.08 16 13 N -0.53 -20.01 3.58 -888.17 -3.18 -23.20 16 14 C 0.05 1.36 5.39 86.49 0.47 1.83 16 15 C -0.10 -2.04 5.29 30.53 0.16 -1.88 16 16 C -0.11 -2.33 3.10 -10.91 -0.03 -2.36 16 17 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 18 C 0.06 1.07 7.38 72.40 0.53 1.61 16 19 O -0.38 -9.25 11.07 -148.98 -1.65 -10.90 16 20 C 0.10 2.63 2.73 30.93 0.08 2.71 16 21 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 22 C 0.15 4.63 5.21 86.38 0.45 5.08 16 23 N -0.73 -20.39 5.44 -478.53 -2.60 -23.00 16 24 C 0.69 22.18 8.28 179.05 1.48 23.66 16 25 O -0.64 -26.88 15.92 -3.99 -0.06 -26.94 16 26 N -0.64 -14.57 3.27 -890.18 -2.91 -17.48 16 27 C 0.10 1.90 10.41 127.77 1.33 3.23 16 28 C 0.07 0.94 9.48 127.77 1.21 2.15 16 29 C -0.10 -2.98 2.46 -11.84 -0.03 -3.01 16 30 H 0.07 2.05 7.74 -2.39 -0.02 2.03 16 31 C 0.11 4.16 4.51 85.72 0.39 4.54 16 32 H 0.03 1.25 7.09 -2.39 -0.02 1.23 16 33 H 0.06 2.12 7.67 -2.39 -0.02 2.10 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.99 6.52 -2.39 -0.02 1.97 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.09 2.29 6.22 -2.39 -0.01 2.27 16 39 H 0.02 0.58 8.11 -2.39 -0.02 0.56 16 40 H 0.07 1.62 7.81 -2.39 -0.02 1.60 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.24 7.43 -2.39 -0.02 1.22 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.41 9.15 6.82 -92.71 -0.63 8.51 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 1.19 7.92 -2.39 -0.02 1.17 16 49 H 0.05 1.23 7.42 -2.38 -0.02 1.22 16 50 H 0.06 0.81 7.96 -2.39 -0.02 0.79 16 51 H 0.11 0.79 7.79 -2.39 -0.02 0.77 16 52 H 0.07 0.80 7.96 -2.39 -0.02 0.78 16 53 H 0.05 2.07 6.71 -2.39 -0.02 2.06 16 54 H -0.01 -0.25 7.62 -2.39 -0.02 -0.27 16 Total: -1.00 -76.13 406.48 -0.48 -76.61 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.21 Total: 23.96 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.57 Total: 13.48 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -8.40 Total: -122.67 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.71 Total: -37.84 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.85 Total: 46.46 kcal Total: -76.13 -0.48 -76.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167839.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.268 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds