Wall clock time and date at job start Tue Mar 31 2020 23:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47429 * 2 1 4 4 H 1.09003 * 109.47443 * 177.54898 * 3 2 1 5 5 C 1.50708 * 109.46799 * 297.54519 * 3 2 1 6 6 H 1.07998 * 119.99665 * 120.00264 * 5 3 2 7 7 C 1.37875 * 119.99959 * 299.99877 * 5 3 2 8 8 N 1.31519 * 119.99903 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00076 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47485 * 89.99663 * 9 7 5 11 11 H 1.48502 * 109.47401 * 209.99774 * 9 7 5 12 12 H 1.48501 * 109.47326 * 329.99815 * 9 7 5 13 13 N 1.46901 * 109.47508 * 57.54169 * 3 2 1 14 14 C 1.46647 * 110.99702 * 58.96751 * 13 3 2 15 15 C 1.51578 * 110.46809 * 186.29687 * 14 13 3 16 16 C 1.49388 * 115.48306 * 315.21763 * 15 14 13 17 17 H 1.09007 * 108.12628 * 153.71679 * 16 15 14 18 18 C 1.54299 * 113.10876 * 272.05617 * 16 15 14 19 19 O 1.44718 * 102.62467 * 166.40157 * 18 16 15 20 20 C 1.43776 * 107.21893 * 320.63859 * 19 18 16 21 21 H 1.08996 * 109.87660 * 264.55905 * 20 19 18 22 22 C 1.53004 * 109.87334 * 143.42444 * 20 19 18 23 23 N 1.46495 * 109.47393 * 66.45241 * 22 20 19 24 24 C 1.34774 * 120.00388 * 180.02562 * 23 22 20 25 25 O 1.21590 * 119.99656 * 359.97438 * 24 23 22 26 26 N 1.34775 * 120.00358 * 180.02562 * 24 23 22 27 27 C 1.46500 * 120.00112 * 179.97438 * 26 24 23 28 28 C 1.46503 * 119.99801 * 0.02562 * 26 24 23 29 29 C 1.52995 * 117.11189 * 31.57509 * 16 15 14 30 30 H 1.09008 * 111.87533 * 91.05795 * 29 16 15 31 31 C 1.46652 * 111.00273 * 181.37857 * 13 3 2 32 32 H 1.09001 * 109.47231 * 185.25602 * 1 2 3 33 33 H 1.08996 * 109.47275 * 305.25532 * 1 2 3 34 34 H 1.09002 * 109.46828 * 65.25574 * 1 2 3 35 35 H 1.09004 * 109.47272 * 239.99077 * 2 1 3 36 36 H 1.09004 * 109.46930 * 119.99947 * 2 1 3 37 37 H 0.96997 * 119.99505 * 180.02562 * 8 7 5 38 38 H 1.08993 * 109.30458 * 306.60754 * 14 13 3 39 39 H 1.09001 * 109.29656 * 66.19707 * 14 13 3 40 40 H 1.09000 * 108.27937 * 76.77727 * 15 14 13 41 41 H 1.09005 * 108.28046 * 193.65793 * 15 14 13 42 42 H 1.09009 * 110.77456 * 48.12528 * 18 16 15 43 43 H 1.08995 * 110.78230 * 284.69423 * 18 16 15 44 44 H 1.08999 * 109.47252 * 186.45775 * 22 20 19 45 45 H 1.09007 * 109.46766 * 306.45065 * 22 20 19 46 46 H 0.97007 * 119.99919 * 0.02562 * 23 22 20 47 47 H 1.09007 * 109.46606 * 60.00696 * 27 26 24 48 48 H 1.08997 * 109.46850 * 180.02562 * 27 26 24 49 49 H 1.08994 * 109.47339 * 300.00186 * 27 26 24 50 50 H 1.09001 * 109.47107 * 89.99861 * 28 26 24 51 51 H 1.08994 * 109.46616 * 210.00014 * 28 26 24 52 52 H 1.09001 * 109.46886 * 329.99529 * 28 26 24 53 53 H 1.08995 * 109.37646 * 49.18250 * 31 13 3 54 54 H 1.09004 * 109.28189 * 289.48026 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1292 1.4427 0.0439 5 6 1.5880 2.1350 -1.2599 6 1 0.9639 3.0143 -1.1984 7 6 1.9712 1.6462 -2.4908 8 7 1.5763 2.2503 -3.5902 9 14 3.0501 0.1250 -2.5969 10 1 2.1934 -1.0862 -2.6598 11 1 3.8923 0.1996 -3.8178 12 1 3.9227 0.0523 -1.3975 13 7 1.5026 2.1519 1.1686 14 6 1.9027 1.4905 2.4148 15 6 1.2179 2.1380 3.6020 16 6 1.2137 3.6318 3.6055 17 1 0.3517 3.9672 4.1823 18 6 2.4665 4.2394 4.2706 19 8 2.3988 5.6268 3.8645 20 6 1.9519 5.6490 2.4982 21 1 2.8099 5.7060 1.8284 22 6 1.0310 6.8497 2.2716 23 7 1.8004 8.0884 2.4113 24 6 1.1925 9.2809 2.2535 25 8 0.0054 9.3284 1.9945 26 7 1.9004 10.4205 2.3815 27 6 1.2396 11.7166 2.2093 28 6 3.3311 10.3631 2.6919 29 6 1.1729 4.3321 2.2459 30 1 0.1512 4.5317 1.9223 31 6 1.9451 3.5500 1.1840 32 1 -0.3634 -1.0233 0.0941 33 1 -0.3633 0.5932 0.8391 34 1 -0.3633 0.4302 -0.9333 35 1 1.8934 -0.5140 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.8456 1.9061 -4.4561 38 1 1.6252 0.4375 2.3689 39 1 2.9827 1.5736 2.5360 40 1 0.1843 1.7931 3.6305 41 1 1.7128 1.7953 4.5108 42 1 3.3731 3.7688 3.8899 43 1 2.4098 4.1507 5.3555 44 1 0.6056 6.7973 1.2694 45 1 0.2278 6.8357 3.0084 46 1 2.7476 8.0505 2.6176 47 1 0.4418 11.8182 2.9451 48 1 1.9669 12.5165 2.3487 49 1 0.8188 11.7795 1.2059 50 1 3.9028 10.3270 1.7646 51 1 3.6154 11.2489 3.2598 52 1 3.5392 9.4708 3.2822 53 1 1.7677 3.9963 0.2056 54 1 3.0107 3.5878 1.4107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167840.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:31 Heat of formation + Delta-G solvation = -75.842994 kcal Electronic energy + Delta-G solvation = -31603.840781 eV Core-core repulsion = 27575.308386 eV Total energy + Delta-G solvation = -4028.532396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.75169 -41.03312 -39.04265 -36.61758 -36.22922 -35.71424 -34.01270 -33.21285 -32.32383 -30.30747 -29.03430 -28.56211 -27.19900 -26.27544 -25.06460 -24.27546 -23.75767 -22.61733 -21.43775 -20.89608 -19.58046 -19.09534 -18.47439 -17.77163 -17.51377 -17.17438 -16.79439 -16.59183 -16.47891 -15.96413 -15.68411 -15.33475 -15.16102 -14.95022 -14.82843 -14.76378 -14.60692 -14.33675 -14.00987 -13.73182 -13.58231 -13.54872 -13.45438 -13.33275 -13.09729 -12.79402 -12.75544 -12.62542 -12.42628 -12.34477 -12.16938 -11.91291 -11.87085 -11.63811 -11.36839 -11.34401 -11.23157 -11.04806 -10.72982 -10.65716 -10.62390 -10.30915 -9.54755 -8.93720 -8.24901 -6.25614 1.29516 1.33325 1.42528 1.62955 2.06220 2.32417 2.72936 2.96364 3.09042 3.18537 3.50474 3.75904 3.78848 3.91457 4.09457 4.21125 4.23741 4.29505 4.35181 4.36191 4.41450 4.43536 4.49641 4.51314 4.56352 4.59140 4.66204 4.73830 4.74542 4.81039 4.84173 4.86353 4.91285 4.95511 4.99681 5.06271 5.10587 5.18800 5.26609 5.27585 5.34105 5.37637 5.39855 5.44888 5.48771 5.67557 5.77524 5.84135 5.85121 6.08756 6.41708 6.75225 6.80830 6.88188 7.38107 7.47615 8.91341 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003026 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.382612 B = 9249.844091 C =10580.076006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 C 0.189 3.811 4 H -0.016 1.016 5 C -0.489 4.489 6 H 0.042 0.958 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.939 3.061 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.252 1.252 13 N -0.519 5.519 14 C 0.044 3.956 15 C -0.092 4.092 16 C -0.104 4.104 17 H 0.082 0.918 18 C 0.053 3.947 19 O -0.380 6.380 20 C 0.081 3.919 21 H 0.076 0.924 22 C 0.147 3.853 23 N -0.729 5.729 24 C 0.693 3.307 25 O -0.639 6.639 26 N -0.640 5.640 27 C 0.105 3.895 28 C 0.073 3.927 29 C -0.092 4.092 30 H 0.086 0.914 31 C 0.073 3.927 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.022 0.978 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.410 0.590 47 H 0.049 0.951 48 H 0.113 0.887 49 H 0.044 0.956 50 H 0.065 0.935 51 H 0.102 0.898 52 H 0.072 0.928 53 H 0.056 0.944 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 8.933 19.935 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 C 0.081 3.919 4 H 0.002 0.998 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.243 5.243 14 C -0.084 4.084 15 C -0.130 4.130 16 C -0.123 4.123 17 H 0.101 0.899 18 C -0.022 4.022 19 O -0.300 6.300 20 C 0.022 3.978 21 H 0.094 0.906 22 C 0.022 3.978 23 N -0.387 5.387 24 C 0.393 3.607 25 O -0.521 6.521 26 N -0.377 5.377 27 C -0.038 4.038 28 C -0.069 4.069 29 C -0.111 4.111 30 H 0.104 0.896 31 C -0.056 4.056 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.248 0.752 47 H 0.068 0.932 48 H 0.132 0.868 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.121 0.879 52 H 0.091 0.909 53 H 0.075 0.925 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.044 9.149 19.683 22.284 hybrid contribution 1.478 -0.681 -1.194 2.019 sum 6.522 8.468 18.489 21.356 Atomic orbital electron populations 1.21371 0.94647 0.99761 1.01668 1.21862 0.98160 0.96673 0.99234 1.19525 0.91499 0.91793 0.89073 0.99848 1.21084 1.30065 1.11883 0.89698 0.93963 1.25657 0.97308 0.99800 0.95414 1.70036 1.47916 1.42691 0.98269 0.85998 0.79386 0.80751 0.77119 1.19327 1.23106 1.17621 1.61985 1.59105 1.01531 1.01705 1.21977 0.97040 0.99471 0.89886 1.20278 1.02183 0.92841 0.97672 1.21335 0.99931 0.96322 0.94753 0.89942 1.23782 0.96910 0.80442 1.01105 1.88860 1.87894 1.26584 1.26635 1.23142 0.96119 0.93674 0.84836 0.90582 1.21307 0.93812 0.81360 1.01305 1.45047 1.13726 1.03842 1.76051 1.16176 0.84630 0.81552 0.78300 1.90886 1.16107 1.87042 1.58100 1.47082 1.11095 1.04941 1.74591 1.21612 0.98534 0.82666 1.00974 1.22036 0.78354 1.04737 1.01777 1.22110 0.99931 0.93231 0.95874 0.89586 1.21917 0.95271 0.89911 0.98455 0.93091 0.91501 0.95350 0.94971 0.91344 0.92815 0.89886 0.96002 0.91302 0.88920 0.92237 0.86420 0.91836 0.91693 0.75209 0.93227 0.86838 0.93695 0.91687 0.87922 0.90901 0.92536 0.95959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.50 71.98 0.68 -3.83 16 2 C -0.12 -4.87 4.73 30.59 0.14 -4.72 16 3 C 0.19 8.39 1.32 44.17 0.06 8.45 16 4 H -0.02 -0.74 7.20 -2.39 -0.02 -0.76 16 5 C -0.49 -26.77 7.31 25.60 0.19 -26.58 16 6 H 0.04 2.61 6.89 -2.91 -0.02 2.59 16 7 C 0.02 0.87 5.45 84.65 0.46 1.33 16 8 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 9 Si 0.94 44.53 24.39 68.60 1.67 46.20 16 10 H -0.27 -12.13 6.85 99.48 0.68 -11.45 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 13 N -0.52 -19.26 3.60 -879.91 -3.17 -22.43 16 14 C 0.04 1.24 5.22 85.89 0.45 1.69 16 15 C -0.09 -1.96 5.50 28.97 0.16 -1.80 16 16 C -0.10 -2.32 2.73 -11.51 -0.03 -2.35 16 17 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 18 C 0.05 1.04 7.10 72.42 0.51 1.56 16 19 O -0.38 -8.92 11.15 -148.98 -1.66 -10.58 16 20 C 0.08 2.07 3.03 31.30 0.09 2.17 16 21 H 0.08 2.01 7.38 -2.39 -0.02 1.99 16 22 C 0.15 4.09 5.17 86.38 0.45 4.54 16 23 N -0.73 -18.42 5.40 -478.53 -2.58 -21.00 16 24 C 0.69 20.19 8.28 179.06 1.48 21.67 16 25 O -0.64 -24.63 16.34 -4.00 -0.07 -24.69 16 26 N -0.64 -13.13 3.27 -890.19 -2.91 -16.04 16 27 C 0.10 1.77 10.16 127.77 1.30 3.07 16 28 C 0.07 0.82 10.17 127.77 1.30 2.12 16 29 C -0.09 -2.60 3.15 -10.15 -0.03 -2.63 16 30 H 0.09 2.65 7.76 -2.38 -0.02 2.63 16 31 C 0.07 2.60 4.29 86.29 0.37 2.98 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.45 7.37 -2.39 -0.02 2.43 16 34 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 35 H 0.03 1.38 3.23 -2.39 -0.01 1.37 16 36 H 0.07 2.28 6.38 -2.38 -0.02 2.26 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.08 2.25 5.98 -2.39 -0.01 2.23 16 39 H 0.02 0.61 8.03 -2.39 -0.02 0.59 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.43 7.92 -2.38 -0.02 1.42 16 42 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.41 8.17 6.20 -92.70 -0.58 7.59 16 47 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.11 0.95 7.79 -2.39 -0.02 0.94 16 49 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.10 0.60 7.92 -2.39 -0.02 0.58 16 52 H 0.07 0.77 6.36 -2.39 -0.02 0.75 16 53 H 0.06 2.47 6.08 -2.39 -0.01 2.46 16 54 H 0.02 0.78 7.63 -2.39 -0.02 0.76 16 Total: -1.00 -74.83 399.06 -0.60 -75.43 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.23 Total: 23.99 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 7.59 Total: 7.64 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -8.37 Total: -117.99 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.73 Total: -35.27 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -74.83 -0.60 -75.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167840.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.408 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds