Wall clock time and date at job start Tue Mar 31 2020 22:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 H 1.09001 * 109.47298 * 308.12883 * 3 2 1 5 5 C 1.52994 * 109.47135 * 188.12385 * 3 2 1 6 6 C 1.53007 * 109.47126 * 68.12522 * 3 2 1 7 7 H 1.08992 * 109.47156 * 174.86958 * 6 3 2 8 8 N 1.46500 * 109.46774 * 54.86955 * 6 3 2 9 9 C 1.34782 * 119.99841 * 93.29436 * 8 6 3 10 10 C 1.50696 * 119.99842 * 185.06013 * 9 8 6 11 11 O 1.21278 * 119.99567 * 5.05268 * 9 8 6 12 12 C 1.50705 * 109.47034 * 294.87296 * 6 3 2 13 13 O 1.21286 * 120.00113 * 120.01334 * 12 6 3 14 14 N 1.34772 * 119.99877 * 300.01413 * 12 6 3 15 15 C 1.46505 * 119.99906 * 175.23301 * 14 12 6 16 16 C 1.53000 * 109.47023 * 179.72317 * 15 14 12 17 17 H 1.09003 * 109.49999 * 304.99921 * 16 15 14 18 18 C 1.53039 * 109.49806 * 184.93390 * 16 15 14 19 19 C 1.53039 * 109.54027 * 178.71418 * 18 16 15 20 20 C 1.53191 * 109.33814 * 61.32144 * 19 18 16 21 21 N 1.46934 * 108.77302 * 305.37592 * 20 19 18 22 22 C 1.36937 * 120.63152 * 233.63028 * 21 20 19 23 23 H 1.07997 * 119.99717 * 142.75199 * 22 21 20 24 24 C 1.38808 * 119.99929 * 322.75694 * 22 21 20 25 25 N 1.31614 * 120.00252 * 353.31294 * 24 22 21 26 26 Si 1.86808 * 119.99658 * 173.31859 * 24 22 21 27 27 H 1.48496 * 109.47156 * 59.99851 * 26 24 22 28 28 H 1.48503 * 109.46902 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.46927 * 299.99556 * 26 24 22 30 30 C 1.46928 * 118.73418 * 53.61300 * 21 20 19 31 31 H 1.08999 * 109.46703 * 165.55708 * 1 2 3 32 32 H 1.09004 * 109.47195 * 285.56003 * 1 2 3 33 33 H 1.08998 * 109.46831 * 45.55719 * 1 2 3 34 34 H 1.08992 * 109.46786 * 240.00112 * 2 1 3 35 35 H 1.08996 * 109.46808 * 119.99858 * 2 1 3 36 36 H 1.08998 * 109.47251 * 305.83430 * 5 3 2 37 37 H 1.08996 * 109.46930 * 65.83342 * 5 3 2 38 38 H 1.09000 * 109.47203 * 185.83540 * 5 3 2 39 39 H 0.97004 * 120.00481 * 273.28470 * 8 6 3 40 40 H 1.09005 * 109.47496 * 359.97438 * 10 9 8 41 41 H 1.09003 * 109.47316 * 119.99547 * 10 9 8 42 42 H 1.08997 * 109.46787 * 239.99772 * 10 9 8 43 43 H 0.97004 * 120.00539 * 354.95081 * 14 12 6 44 44 H 1.08996 * 109.47074 * 299.71940 * 15 14 12 45 45 H 1.09002 * 109.46917 * 59.72150 * 15 14 12 46 46 H 1.08997 * 109.45913 * 298.70472 * 18 16 15 47 47 H 1.09004 * 109.45878 * 58.66435 * 18 16 15 48 48 H 1.09001 * 109.47315 * 301.36636 * 19 18 16 49 49 H 1.09007 * 109.49566 * 181.28163 * 19 18 16 50 50 H 1.08996 * 109.58677 * 185.59445 * 20 19 18 51 51 H 1.09000 * 109.70766 * 65.23195 * 20 19 18 52 52 H 0.97004 * 120.00055 * 180.02562 * 25 24 22 53 53 H 1.09001 * 109.58483 * 186.60451 * 30 21 20 54 54 H 1.08997 * 109.70492 * 66.25037 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5630 1.9966 -0.8084 5 6 3.5564 1.4473 -0.2038 6 6 1.7033 2.1025 1.3387 7 1 2.1453 3.0982 1.3742 8 7 2.2414 1.2901 2.4326 9 6 3.4623 1.5605 2.9354 10 6 4.0637 0.6570 3.9808 11 8 4.0769 2.5309 2.5463 12 6 0.2072 2.2115 1.4828 13 8 -0.3544 1.6646 2.4083 14 7 -0.5069 2.9165 0.5831 15 6 -1.9696 2.9366 0.6625 16 6 -2.5295 3.8091 -0.4627 17 1 -2.0782 4.8001 -0.4135 18 6 -4.0471 3.9307 -0.3079 19 6 -4.6042 4.8295 -1.4143 20 6 -4.3057 4.1993 -2.7782 21 7 -2.8617 3.9460 -2.8763 22 6 -2.1394 4.4269 -3.9357 23 1 -1.1336 4.7896 -3.7832 24 6 -2.7000 4.4483 -5.2054 25 7 -3.8717 3.8876 -5.4169 26 14 -1.7910 5.2728 -6.6138 27 1 -0.4782 4.6078 -6.8124 28 1 -2.5961 5.1588 -7.8565 29 1 -1.5762 6.7065 -6.2924 30 6 -2.2074 3.1674 -1.8160 31 1 -0.3633 -0.9952 -0.2563 32 1 -0.3634 0.2757 0.9900 33 1 -0.3633 0.7196 -0.7337 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.0256 0.8083 0.5442 37 1 3.7902 1.0724 -1.2002 38 1 3.9336 2.4648 -0.1007 39 1 1.7189 0.5576 2.7953 40 1 3.3704 -0.1545 4.2022 41 1 5.0007 0.2431 3.6079 42 1 4.2549 1.2289 4.8888 43 1 -0.0522 3.4141 -0.1145 44 1 -2.3530 1.9214 0.5599 45 1 -2.2757 3.3450 1.6256 46 1 -4.5000 2.9420 -0.3814 47 1 -4.2793 4.3649 0.6646 48 1 -4.1338 5.8111 -1.3563 49 1 -5.6821 4.9340 -1.2899 50 1 -4.6116 4.8819 -3.5710 51 1 -4.8489 3.2593 -2.8756 52 1 -4.2633 3.9022 -6.3043 53 1 -1.1289 3.1692 -1.9738 54 1 -2.5772 2.1421 -1.8314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265596977.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:00 Heat of formation + Delta-G solvation = -94.321688 kcal Electronic energy + Delta-G solvation = -31777.184105 eV Core-core repulsion = 27747.850413 eV Total energy + Delta-G solvation = -4029.333692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93687 -40.26199 -39.31661 -37.48316 -36.28043 -34.76890 -34.38045 -32.27856 -32.10866 -31.52486 -30.53112 -28.41357 -27.20699 -26.16328 -24.42431 -23.81799 -22.58790 -22.14030 -21.62668 -20.87267 -20.47212 -18.84980 -18.47720 -17.95703 -17.28409 -16.93901 -16.71899 -16.44923 -16.12480 -15.82003 -15.55747 -15.23894 -15.05748 -14.83816 -14.63891 -14.50185 -14.32809 -14.01235 -13.95512 -13.73713 -13.65751 -13.45604 -13.29248 -13.00191 -12.97859 -12.92967 -12.77815 -12.54851 -12.48875 -12.34214 -11.99840 -11.96275 -11.82268 -11.64751 -11.54487 -11.48471 -11.30975 -11.08181 -10.95019 -10.90239 -10.53527 -10.08931 -10.02793 -8.51614 -7.85738 -5.43215 1.47679 1.48700 1.50340 1.55188 1.63336 1.90965 2.49397 2.50498 3.30968 3.53071 3.64096 3.70706 3.79685 3.95709 4.01372 4.04019 4.09497 4.11254 4.39208 4.39729 4.43027 4.54279 4.57567 4.59300 4.63428 4.69440 4.72179 4.76465 4.80372 4.91035 4.93483 4.94595 5.02888 5.05737 5.11155 5.13002 5.15721 5.23932 5.26413 5.33290 5.35371 5.37683 5.40537 5.47466 5.49706 5.58488 5.68183 5.80045 6.44148 6.47325 6.54320 7.11508 7.19299 7.24568 7.86818 8.43157 9.19359 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.002989 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.435234 B = 9365.839807 C =10515.688427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.111 4.111 3 C -0.095 4.095 4 H 0.086 0.914 5 C -0.133 4.133 6 C 0.130 3.870 7 H 0.109 0.891 8 N -0.701 5.701 9 C 0.510 3.490 10 C -0.165 4.165 11 O -0.588 6.588 12 C 0.526 3.474 13 O -0.567 6.567 14 N -0.714 5.714 15 C 0.141 3.859 16 C -0.103 4.103 17 H 0.073 0.927 18 C -0.096 4.096 19 C -0.131 4.131 20 C 0.178 3.822 21 N -0.608 5.608 22 C -0.266 4.266 23 H 0.065 0.935 24 C -0.043 4.043 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.273 1.273 28 H -0.297 1.297 29 H -0.277 1.277 30 C 0.157 3.843 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.415 0.585 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.409 0.591 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.042 0.958 51 H -0.006 1.006 52 H 0.249 0.751 53 H 0.055 0.945 54 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.458 -7.528 17.340 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.104 0.896 5 C -0.190 4.190 6 C 0.021 3.979 7 H 0.127 0.873 8 N -0.355 5.355 9 C 0.299 3.701 10 C -0.224 4.224 11 O -0.468 6.468 12 C 0.313 3.687 13 O -0.448 6.448 14 N -0.365 5.365 15 C 0.017 3.983 16 C -0.123 4.123 17 H 0.091 0.909 18 C -0.134 4.134 19 C -0.170 4.170 20 C 0.052 3.948 21 N -0.332 5.332 22 C -0.396 4.396 23 H 0.083 0.917 24 C -0.239 4.239 25 N -0.579 5.579 26 Si 0.792 3.208 27 H -0.199 1.199 28 H -0.223 1.223 29 H -0.202 1.202 30 C 0.032 3.968 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.246 0.754 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.012 0.988 52 H 0.058 0.942 53 H 0.074 0.926 54 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 11.396 -7.274 17.541 22.146 hybrid contribution -0.146 0.357 -1.542 1.589 sum 11.250 -6.917 15.999 20.746 Atomic orbital electron populations 1.22268 0.96543 1.01962 1.02743 1.21511 0.95080 0.95327 1.02896 1.21595 0.97824 0.97472 0.94617 0.89576 1.21702 0.93683 1.01879 1.01740 1.20825 0.89889 0.98109 0.89077 0.87324 1.45810 1.18401 1.35206 1.36046 1.21522 0.80501 0.85652 0.82422 1.21878 1.03232 0.99775 0.97474 1.90710 1.62252 1.30998 1.62850 1.20551 0.89588 0.77374 0.81212 1.90665 1.72642 1.48304 1.33183 1.46005 1.07641 1.50684 1.32200 1.21274 0.78743 1.00037 0.98295 1.21739 0.96921 0.99274 0.94365 0.90861 1.21320 0.93879 0.99747 0.98457 1.22013 1.00051 0.98862 0.96090 1.20544 0.84091 0.95914 0.94248 1.44163 1.04830 1.60856 1.23314 1.19392 0.98975 1.34809 0.86457 0.91743 1.26051 0.98146 0.99843 0.99839 1.70120 1.18819 1.47480 1.21499 0.85402 0.78111 0.78673 0.78582 1.19905 1.22284 1.20245 1.20990 0.96190 0.92210 0.87429 0.92729 0.91589 0.93212 0.91127 0.90877 0.92981 0.91640 0.93083 0.74698 0.88215 0.87558 0.88015 0.75439 0.91889 0.91032 0.92559 0.90326 0.93017 0.91405 0.93961 0.98817 0.94155 0.92633 0.97541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.51 71.98 0.61 -3.27 16 2 C -0.11 -1.99 5.30 30.60 0.16 -1.83 16 3 C -0.10 -1.78 2.35 -10.79 -0.03 -1.81 16 4 H 0.09 1.67 7.41 -2.39 -0.02 1.65 16 5 C -0.13 -2.49 8.02 71.98 0.58 -1.91 16 6 C 0.13 2.65 2.35 44.25 0.10 2.75 16 7 H 0.11 2.45 7.27 -2.39 -0.02 2.44 16 8 N -0.70 -12.40 3.72 -446.09 -1.66 -14.06 16 9 C 0.51 9.47 6.52 87.65 0.57 10.04 16 10 C -0.16 -1.57 10.39 71.23 0.74 -0.83 16 11 O -0.59 -15.77 15.64 -3.02 -0.05 -15.81 16 12 C 0.53 12.19 4.37 87.66 0.38 12.58 16 13 O -0.57 -15.70 14.41 -3.05 -0.04 -15.75 16 14 N -0.71 -16.18 4.43 -463.05 -2.05 -18.23 16 15 C 0.14 3.49 5.07 86.38 0.44 3.92 16 16 C -0.10 -3.01 2.37 -10.72 -0.03 -3.04 16 17 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 18 C -0.10 -2.82 5.17 30.62 0.16 -2.66 16 19 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 20 C 0.18 8.37 5.21 86.36 0.45 8.82 16 21 N -0.61 -29.24 2.96 -699.09 -2.07 -31.30 16 22 C -0.27 -14.10 9.52 84.03 0.80 -13.30 16 23 H 0.06 3.29 7.84 -2.91 -0.02 3.27 16 24 C -0.04 -2.33 5.10 84.86 0.43 -1.90 16 25 N -0.93 -54.69 11.29 21.65 0.24 -54.45 16 26 Si 0.96 43.91 29.56 68.60 2.03 45.94 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 30 C 0.16 5.95 5.60 86.36 0.48 6.43 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.58 4.56 -2.38 -0.01 1.57 16 33 H 0.05 1.22 7.41 -2.39 -0.02 1.20 16 34 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.07 1.15 6.95 -2.39 -0.02 1.14 16 36 H 0.05 0.96 6.89 -2.39 -0.02 0.95 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.09 7.97 -2.39 -0.02 1.07 16 39 H 0.42 6.40 7.49 -92.71 -0.69 5.70 16 40 H 0.10 0.50 7.92 -2.38 -0.02 0.48 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.41 8.65 7.23 -92.71 -0.67 7.98 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.07 2.14 8.14 -2.38 -0.02 2.13 16 50 H 0.04 2.27 6.45 -2.39 -0.02 2.26 16 51 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 52 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 53 H 0.06 1.99 7.14 -2.39 -0.02 1.98 16 54 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -68.70 410.05 1.98 -66.72 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.48 Total: 27.41 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.05 Total: 9.53 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -5.53 Total: -118.05 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.09 Total: -31.56 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.70 1.98 -66.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265596977.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.598 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds