Wall clock time and date at job start Tue Mar 31 2020 22:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 H 1.08999 * 109.47336 * 306.42733 * 3 2 1 5 5 C 1.52998 * 109.47253 * 186.43096 * 3 2 1 6 6 C 1.50699 * 109.47364 * 162.71481 * 5 3 2 7 7 O 1.21280 * 120.00176 * 350.33991 * 6 5 3 8 8 N 1.34786 * 119.99911 * 170.05991 * 6 5 3 9 9 C 1.47420 * 125.64627 * 0.30217 * 8 6 5 10 10 C 1.54908 * 104.82861 * 204.09095 * 9 8 6 11 11 C 1.55158 * 101.58237 * 322.99085 * 10 9 8 12 12 H 1.08999 * 110.72339 * 276.95812 * 11 10 9 13 13 N 1.46906 * 110.71714 * 153.86386 * 11 10 9 14 14 C 1.46902 * 110.99598 * 86.45532 * 13 11 10 15 15 C 1.50706 * 109.46712 * 179.97438 * 14 13 11 16 16 O 1.21287 * 119.99989 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99603 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99904 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99617 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00305 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99859 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00127 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47194 * 60.00071 * 22 20 18 24 24 H 1.48500 * 109.47212 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47195 * 299.99684 * 22 20 18 26 26 C 1.47013 * 125.64615 * 179.97438 * 8 6 5 27 27 C 1.52999 * 109.47316 * 66.43276 * 3 2 1 28 28 C 1.52995 * 109.47125 * 66.82948 * 27 3 2 29 29 C 1.53005 * 109.47169 * 186.83221 * 27 3 2 30 30 H 1.09001 * 109.47153 * 64.01893 * 1 2 3 31 31 H 1.09001 * 109.47046 * 184.02394 * 1 2 3 32 32 H 1.09000 * 109.46756 * 304.01801 * 1 2 3 33 33 H 1.08996 * 109.46894 * 239.99935 * 2 1 3 34 34 H 1.09001 * 109.47385 * 119.99801 * 2 1 3 35 35 H 1.09003 * 109.47214 * 42.71460 * 5 3 2 36 36 H 1.08997 * 109.47253 * 282.72020 * 5 3 2 37 37 H 1.08994 * 110.37055 * 322.92930 * 9 8 6 38 38 H 1.08998 * 110.36932 * 85.25676 * 9 8 6 39 39 H 1.09000 * 111.00737 * 81.06991 * 10 9 8 40 40 H 1.09004 * 111.00418 * 204.87789 * 10 9 8 41 41 H 1.00897 * 110.99973 * 210.40620 * 13 11 10 42 42 H 1.08998 * 109.47371 * 299.99662 * 14 13 11 43 43 H 1.09002 * 109.47103 * 59.99890 * 14 13 11 44 44 H 0.96994 * 119.99954 * 0.02562 * 17 15 14 45 45 H 0.96992 * 120.00161 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.88396 * 298.39523 * 26 8 6 47 47 H 1.09003 * 109.88559 * 59.55665 * 26 8 6 48 48 H 1.09003 * 109.46800 * 306.82790 * 27 3 2 49 49 H 1.08997 * 109.47197 * 66.34092 * 28 27 3 50 50 H 1.09005 * 109.47073 * 186.33587 * 28 27 3 51 51 H 1.08995 * 109.47628 * 306.33564 * 28 27 3 52 52 H 1.09000 * 109.47323 * 53.76222 * 29 27 3 53 53 H 1.09004 * 109.46822 * 173.76031 * 29 27 3 54 54 H 1.09000 * 109.46982 * 293.75714 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5858 1.9885 -0.8269 5 6 3.5614 1.4455 -0.1616 6 6 4.0191 2.8180 -0.5835 7 8 3.2045 3.6555 -0.9089 8 7 5.3334 3.1165 -0.5937 9 6 6.4259 2.1983 -0.2241 10 6 7.5954 3.1228 0.1971 11 6 7.4446 4.2941 -0.8092 12 1 7.9213 4.0507 -1.7587 13 7 8.0033 5.5332 -0.2519 14 6 9.4442 5.6288 -0.5214 15 6 9.9806 6.9100 0.0633 16 8 9.2360 7.6685 0.6475 17 7 11.2881 7.2124 -0.0620 18 6 11.7761 8.3782 0.4694 19 1 11.1128 9.0540 0.9889 20 6 13.1238 8.6902 0.3398 21 7 13.9309 7.8677 -0.2919 22 14 13.7888 10.2782 1.0645 23 1 13.5579 10.2877 2.5314 24 1 15.2455 10.3746 0.7926 25 1 13.0918 11.4345 0.4462 26 6 5.9153 4.4097 -0.9816 27 6 1.6663 2.1156 1.3222 28 6 2.4380 1.4555 2.4665 29 6 2.0235 3.6019 1.2566 30 1 -0.3633 0.4502 -0.9238 31 1 -0.3633 -1.0251 0.0721 32 1 -0.3633 0.5749 0.8518 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8477 0.7177 -0.9209 36 1 4.0282 1.1827 0.7877 37 1 6.1236 1.5651 0.6099 38 1 6.7143 1.5879 -1.0799 39 1 7.4692 3.4699 1.2226 40 1 8.5548 2.6207 0.0722 41 1 7.5147 6.3417 -0.6064 42 1 9.9558 4.7798 -0.0680 43 1 9.6136 5.6223 -1.5982 44 1 11.8836 6.6056 -0.5289 45 1 14.8718 8.0853 -0.3821 46 1 5.6729 4.6282 -2.0217 47 1 5.5299 5.1985 -0.3355 48 1 0.5956 2.0066 1.4954 49 1 3.5024 1.6610 2.3530 50 1 2.0900 1.8568 3.4184 51 1 2.2714 0.3786 2.4436 52 1 1.5613 4.0483 0.3762 53 1 1.6576 4.1033 2.1527 54 1 3.1060 3.7130 1.1946 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265941900.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:33 Heat of formation + Delta-G solvation = -104.666224 kcal Electronic energy + Delta-G solvation = -29997.021959 eV Core-core repulsion = 25967.239694 eV Total energy + Delta-G solvation = -4029.782265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.48080 -40.23426 -39.37700 -37.91882 -36.19456 -35.54313 -33.28919 -33.26415 -32.06458 -30.92156 -29.86701 -28.04598 -27.78087 -26.12109 -25.23273 -24.04451 -23.14455 -21.55115 -21.14456 -20.43652 -19.90182 -19.36182 -18.13314 -17.75141 -17.65017 -17.12680 -16.82687 -16.37919 -16.18778 -15.83696 -15.75947 -15.29625 -15.24857 -14.72793 -14.59243 -14.36180 -14.31463 -14.02401 -13.85493 -13.61381 -13.50357 -13.47580 -13.31075 -13.14812 -12.89532 -12.84809 -12.53645 -12.48948 -12.42935 -12.23139 -12.16770 -12.12221 -12.08959 -11.86136 -11.81542 -11.50662 -11.31747 -11.17881 -11.01639 -10.68716 -10.35369 -10.01691 -9.62731 -9.39429 -8.46741 -5.95398 1.39698 1.41931 1.52481 1.70131 1.94966 2.05509 2.29657 2.91922 3.20591 3.35585 3.51623 3.70030 3.75559 3.81236 3.85850 4.09589 4.14021 4.26918 4.31956 4.34443 4.38593 4.42094 4.50973 4.51163 4.55799 4.59825 4.62815 4.68857 4.75552 4.78913 4.79021 4.85302 4.86604 4.94611 5.02074 5.05794 5.14536 5.20555 5.23512 5.25281 5.32159 5.36810 5.39901 5.40866 5.45889 5.57609 5.70013 5.88349 6.09436 6.28745 6.57218 6.60327 7.12683 7.23071 7.56249 8.12058 8.70222 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.001729 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.683342 B =16188.376606 C =16487.081707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.070 4.070 4 H 0.059 0.941 5 C -0.131 4.131 6 C 0.519 3.481 7 O -0.575 6.575 8 N -0.620 5.620 9 C 0.101 3.899 10 C -0.122 4.122 11 C 0.078 3.922 12 H 0.078 0.922 13 N -0.673 5.673 14 C 0.069 3.931 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.571 5.571 18 C -0.337 4.337 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.273 1.273 26 C 0.111 3.889 27 C -0.090 4.090 28 C -0.150 4.150 29 C -0.135 4.135 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.343 0.657 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.077 0.923 52 H 0.045 0.955 53 H 0.037 0.963 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.960 -23.376 -1.410 30.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.089 4.089 4 H 0.077 0.923 5 C -0.170 4.170 6 C 0.310 3.690 7 O -0.454 6.454 8 N -0.355 5.355 9 C -0.021 4.021 10 C -0.160 4.160 11 C -0.032 4.032 12 H 0.096 0.904 13 N -0.306 5.306 14 C -0.064 4.064 15 C 0.223 3.777 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.013 4.013 27 C -0.108 4.108 28 C -0.206 4.206 29 C -0.192 4.192 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.162 0.838 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.232 0.768 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.096 0.904 52 H 0.064 0.936 53 H 0.056 0.944 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.662 -22.711 -0.612 30.046 hybrid contribution 0.784 1.513 -0.907 1.931 sum -18.878 -21.198 -1.519 28.425 Atomic orbital electron populations 1.21829 0.95904 1.01969 1.01558 1.21609 0.96014 0.94535 1.03087 1.21030 0.93202 0.97070 0.97589 0.92255 1.21935 0.97729 0.92432 1.04933 1.21009 0.79923 0.91202 0.76865 1.90711 1.52741 1.51772 1.50221 1.48585 1.06094 1.13981 1.66791 1.22598 0.85234 0.92384 1.01840 1.22885 0.99380 0.94502 0.99242 1.22611 0.92193 0.90829 0.97581 0.90418 1.60168 1.02047 1.04730 1.63682 1.21564 0.89784 0.95465 0.99537 1.20923 0.82431 0.89725 0.84585 1.90503 1.58360 1.54050 1.48368 1.41903 1.07858 1.20615 1.50482 1.19622 0.93602 0.99083 1.34318 0.90498 1.25999 0.95565 1.02264 0.97218 1.69652 1.05874 1.38101 1.42229 0.85011 0.77351 0.77552 0.78557 1.19826 1.19360 1.19853 1.21822 0.92911 0.86862 0.99663 1.21159 1.00598 0.93855 0.95168 1.21975 0.99862 1.01501 0.97307 1.21997 1.00393 0.96950 0.99852 0.93587 0.91793 0.92689 0.91100 0.90229 0.86655 0.86834 0.88195 0.88707 0.91271 0.87829 0.83752 0.87152 0.91218 0.76846 0.91260 0.91837 0.93119 0.90622 0.92804 0.93043 0.90443 0.93626 0.94387 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.78 71.98 0.70 -0.88 16 2 C -0.12 -1.09 5.28 30.59 0.16 -0.93 16 3 C -0.07 -1.02 1.64 -10.80 -0.02 -1.04 16 4 H 0.06 1.21 7.30 -2.39 -0.02 1.19 16 5 C -0.13 -1.73 4.23 29.85 0.13 -1.61 16 6 C 0.52 11.31 5.89 87.66 0.52 11.83 16 7 O -0.57 -17.26 12.48 -3.03 -0.04 -17.30 16 8 N -0.62 -12.36 3.33 -811.81 -2.70 -15.06 16 9 C 0.10 1.27 6.69 86.86 0.58 1.85 16 10 C -0.12 -2.06 6.71 31.99 0.21 -1.84 16 11 C 0.08 1.68 3.23 46.11 0.15 1.83 16 12 H 0.08 1.43 7.89 -2.39 -0.02 1.41 16 13 N -0.67 -20.49 5.93 -489.40 -2.90 -23.39 16 14 C 0.07 2.21 6.02 85.56 0.52 2.73 16 15 C 0.44 20.44 7.82 87.66 0.69 21.13 16 16 O -0.63 -34.90 15.78 -3.05 -0.05 -34.95 16 17 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 18 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 22 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.11 2.65 6.41 86.73 0.56 3.20 16 27 C -0.09 -1.44 2.59 -10.79 -0.03 -1.47 16 28 C -0.15 -1.87 8.40 71.98 0.60 -1.26 16 29 C -0.13 -3.12 7.48 71.98 0.54 -2.58 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.59 6.32 -2.39 -0.02 0.58 16 33 H 0.07 0.57 8.02 -2.39 -0.02 0.55 16 34 H 0.08 0.56 6.26 -2.39 -0.01 0.55 16 35 H 0.12 1.01 7.93 -2.39 -0.02 0.99 16 36 H 0.11 1.13 4.81 -2.39 -0.01 1.12 16 37 H 0.10 0.83 7.18 -2.39 -0.02 0.82 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.34 11.48 8.15 -89.70 -0.73 10.75 16 42 H 0.11 3.08 8.13 -2.39 -0.02 3.06 16 43 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 44 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 45 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.05 1.49 7.97 -2.39 -0.02 1.47 16 48 H 0.08 1.16 6.26 -2.39 -0.01 1.15 16 49 H 0.05 0.69 6.34 -2.39 -0.02 0.68 16 50 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.08 0.67 6.26 -2.39 -0.01 0.65 16 52 H 0.04 1.26 6.89 -2.39 -0.02 1.24 16 53 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 54 H 0.04 0.95 5.55 -2.39 -0.01 0.94 16 Total: -1.00 -73.13 411.94 1.03 -72.09 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -0.55 Total: 40.32 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.59 Total: 12.58 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -6.94 Total: -117.60 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.25 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.13 1.03 -72.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265941900.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.573 kcal (2) G-P(sol) polarization free energy of solvation -73.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds