Wall clock time and date at job start Tue Mar 31 2020 22:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 H 1.09001 * 109.46878 * 304.99767 * 3 2 1 5 5 C 1.52993 * 109.47121 * 64.99907 * 3 2 1 6 6 C 1.50699 * 109.46963 * 185.00172 * 3 2 1 7 7 O 1.21278 * 120.00311 * 359.97438 * 6 3 2 8 8 N 1.34782 * 119.99640 * 179.97438 * 6 3 2 9 9 C 1.46505 * 119.99786 * 179.97438 * 8 6 3 10 10 C 1.53002 * 109.47110 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47020 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47108 * 185.24471 * 11 10 9 13 13 H 1.09002 * 110.33105 * 56.87476 * 12 11 10 14 14 C 1.54908 * 110.37528 * 179.24649 * 12 11 10 15 15 C 1.55137 * 101.65330 * 155.89752 * 14 12 11 16 16 C 1.54317 * 103.02331 * 324.35045 * 15 14 12 17 17 N 1.47448 * 107.23099 * 22.27981 * 16 15 14 18 18 C 1.46905 * 111.00097 * 123.25813 * 17 16 15 19 19 C 1.50702 * 109.46819 * 55.89905 * 18 17 16 20 20 O 1.21288 * 120.00214 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99876 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00392 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99589 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00615 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00482 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99718 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47043 * 90.00072 * 26 24 22 28 28 H 1.48506 * 109.46891 * 209.99814 * 26 24 22 29 29 H 1.48496 * 109.46956 * 329.99657 * 26 24 22 30 30 H 1.08998 * 109.47323 * 60.00323 * 1 2 3 31 31 H 1.09011 * 109.46722 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47362 * 299.99721 * 1 2 3 33 33 H 1.08998 * 109.47323 * 119.99677 * 2 1 3 34 34 H 1.09004 * 109.47476 * 240.00158 * 2 1 3 35 35 H 1.09003 * 109.47257 * 299.99790 * 5 3 2 36 36 H 1.08991 * 109.47348 * 60.00235 * 5 3 2 37 37 H 1.09011 * 109.47077 * 180.02562 * 5 3 2 38 38 H 0.97003 * 120.00389 * 359.97438 * 8 6 3 39 39 H 1.09001 * 109.46977 * 299.99816 * 9 8 6 40 40 H 1.08994 * 109.47201 * 60.00175 * 9 8 6 41 41 H 1.09001 * 109.46878 * 299.99666 * 10 9 8 42 42 H 1.09004 * 109.47165 * 59.99706 * 10 9 8 43 43 H 1.09000 * 109.47459 * 305.24562 * 11 10 9 44 44 H 1.09004 * 109.47183 * 65.25051 * 11 10 9 45 45 H 1.08988 * 110.99258 * 273.99710 * 14 12 11 46 46 H 1.09008 * 110.98693 * 37.81138 * 14 12 11 47 47 H 1.08999 * 110.71010 * 205.96596 * 15 14 12 48 48 H 1.09003 * 110.70204 * 82.73238 * 15 14 12 49 49 H 1.08997 * 109.89270 * 262.87732 * 16 15 14 50 50 H 1.09001 * 109.89222 * 141.68184 * 16 15 14 51 51 H 1.08991 * 109.47227 * 175.89752 * 18 17 16 52 52 H 1.08998 * 109.47285 * 295.90181 * 18 17 16 53 53 H 0.97009 * 120.00095 * 359.97438 * 21 19 18 54 54 H 0.97001 * 120.00415 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1265 1.3073 6 6 3.5418 1.4443 -0.1239 7 8 4.1450 0.3952 -0.2038 8 7 4.2147 2.6120 -0.1459 9 6 5.6749 2.6138 -0.2657 10 6 6.1848 4.0563 -0.2658 11 6 7.7097 4.0581 -0.3904 12 6 8.2303 5.4908 -0.2593 13 1 7.9053 5.9270 0.6853 14 6 9.7757 5.5147 -0.3635 15 6 10.0354 6.9687 -0.8381 16 6 8.8391 7.2486 -1.7718 17 7 7.7626 6.3144 -1.3946 18 6 6.5334 7.0400 -1.0472 19 6 6.1322 7.9276 -2.1971 20 8 6.8042 7.9535 -3.2064 21 7 5.0271 8.6934 -2.1036 22 6 4.6617 9.5005 -3.1498 23 1 5.2597 9.5229 -4.0489 24 6 3.5221 10.2896 -3.0536 25 7 3.1722 11.0636 -4.0562 26 14 2.4874 10.2502 -1.4988 27 1 2.9797 11.2813 -0.5503 28 1 1.0694 10.5289 -1.8407 29 1 2.5904 8.9091 -0.8695 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 0.5488 2.1252 1.3968 36 1 2.0698 1.5876 2.1491 37 1 1.9981 3.1545 1.3071 38 1 3.7323 3.4511 -0.0823 39 1 6.1092 2.0753 0.5766 40 1 5.9636 2.1259 -1.1966 41 1 5.7505 4.5951 -1.1080 42 1 5.8960 4.5438 0.6653 43 1 8.1395 3.4417 0.3992 44 1 7.9953 3.6553 -1.3621 45 1 10.2354 5.3329 0.6078 46 1 10.1284 4.7943 -1.1017 47 1 10.9754 7.0333 -1.3861 48 1 10.0332 7.6563 0.0077 49 1 9.1303 7.0796 -2.8085 50 1 8.5002 8.2765 -1.6424 51 1 5.7353 6.3262 -0.8436 52 1 6.7097 7.6504 -0.1615 53 1 4.4897 8.6730 -1.2961 54 1 2.3764 11.6142 -3.9892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266201820.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:46 Heat of formation + Delta-G solvation = -114.839679 kcal Electronic energy + Delta-G solvation = -30172.886168 eV Core-core repulsion = 26142.662749 eV Total energy + Delta-G solvation = -4030.223419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06982 -40.85680 -39.34487 -36.91034 -36.25255 -35.98512 -33.99034 -33.77369 -33.04227 -30.93949 -29.60478 -28.41372 -26.59067 -25.96999 -25.42410 -23.06060 -22.55631 -21.88477 -21.23650 -20.96669 -20.50563 -20.07111 -18.06278 -17.75909 -17.42344 -17.01502 -16.76513 -16.69184 -16.35397 -15.98998 -15.68657 -15.26362 -15.24320 -14.95611 -14.64058 -14.43497 -14.37926 -14.21327 -13.86314 -13.71551 -13.54623 -13.42395 -13.34558 -12.95723 -12.94150 -12.89940 -12.55991 -12.49453 -12.40449 -12.24981 -12.10276 -11.99188 -11.92770 -11.73045 -11.60736 -11.54101 -11.52685 -11.48657 -11.40439 -10.71074 -10.31362 -10.22591 -10.07224 -9.16626 -8.40146 -6.01261 1.29923 1.36554 1.45657 1.64451 1.96875 2.24257 2.24720 2.70411 3.15928 3.21492 3.65968 3.72267 3.82379 3.87126 3.97928 3.99811 4.10686 4.12919 4.21830 4.31380 4.40727 4.42234 4.46688 4.48552 4.53134 4.60431 4.64323 4.68818 4.74422 4.76996 4.87968 4.93501 4.98934 5.00127 5.04256 5.10800 5.11543 5.13845 5.20358 5.23734 5.36394 5.37253 5.40973 5.45343 5.48994 5.53292 5.54870 5.93299 6.05604 6.24829 6.55953 6.61157 6.89642 7.25585 7.40598 7.98283 8.77675 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006864 B = 0.003271 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4078.280671 B = 8556.964292 C =12014.838881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.110 4.110 4 H 0.111 0.889 5 C -0.142 4.142 6 C 0.510 3.490 7 O -0.589 6.589 8 N -0.721 5.721 9 C 0.123 3.877 10 C -0.127 4.127 11 C -0.093 4.093 12 C 0.070 3.930 13 H 0.073 0.927 14 C -0.115 4.115 15 C -0.140 4.140 16 C 0.063 3.937 17 N -0.522 5.522 18 C 0.046 3.954 19 C 0.448 3.552 20 O -0.608 6.608 21 N -0.591 5.591 22 C -0.326 4.326 23 H 0.052 0.948 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.276 1.276 29 H -0.225 1.225 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.046 0.954 50 H 0.027 0.973 51 H 0.123 0.877 52 H 0.074 0.926 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -17.425 19.546 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.131 4.131 4 H 0.129 0.871 5 C -0.199 4.199 6 C 0.297 3.703 7 O -0.470 6.470 8 N -0.373 5.373 9 C 0.000 4.000 10 C -0.164 4.164 11 C -0.131 4.131 12 C -0.038 4.038 13 H 0.091 0.909 14 C -0.153 4.153 15 C -0.178 4.178 16 C -0.065 4.065 17 N -0.247 5.247 18 C -0.085 4.085 19 C 0.236 3.764 20 O -0.492 6.492 21 N -0.233 5.233 22 C -0.456 4.456 23 H 0.070 0.930 24 C -0.215 4.215 25 N -0.577 5.577 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.201 1.201 29 H -0.148 1.148 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.065 0.935 50 H 0.045 0.955 51 H 0.140 0.860 52 H 0.092 0.908 53 H 0.225 0.775 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.737 -18.309 18.288 25.888 hybrid contribution -0.641 1.503 0.238 1.651 sum 0.096 -16.806 18.526 25.014 Atomic orbital electron populations 1.21823 0.93695 1.02399 1.02766 1.21307 0.96820 0.94197 1.01917 1.21423 0.89634 0.99671 1.02383 0.87139 1.21834 1.03452 1.00464 0.94149 1.21287 0.91270 0.83134 0.74570 1.90666 1.71542 1.33101 1.51673 1.46061 1.08131 1.09076 1.74027 1.21320 0.79612 0.97956 1.01134 1.21863 0.96905 0.94520 1.03153 1.21398 0.94094 0.94966 1.02675 1.22794 0.95092 0.93990 0.91894 0.90913 1.22718 0.94064 0.95795 1.02712 1.22844 0.97973 0.97906 0.99103 1.22500 0.91137 0.93945 0.98963 1.63201 1.02878 1.22128 1.36524 1.22207 0.95779 0.96589 0.93900 1.20936 0.81895 0.83192 0.90366 1.90561 1.54756 1.69349 1.34511 1.42012 1.24988 1.39822 1.16483 1.18965 1.09986 1.20246 0.96366 0.92985 1.26141 0.98154 0.94972 1.02227 1.69811 1.26804 1.27228 1.33900 0.85377 0.77773 0.81037 0.77418 1.18340 1.20083 1.14801 0.92195 0.92234 0.91139 0.92443 0.93234 0.89596 0.92669 0.90891 0.75009 0.91532 0.93480 0.91801 0.89465 0.89158 0.92398 0.88230 0.90838 0.90323 0.90695 0.93503 0.95464 0.85971 0.90777 0.77516 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.03 16 2 C -0.10 -1.72 4.75 30.59 0.15 -1.57 16 3 C -0.11 -1.65 2.72 -11.54 -0.03 -1.68 16 4 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.14 -1.46 8.84 71.98 0.64 -0.82 16 6 C 0.51 11.00 7.15 87.66 0.63 11.63 16 7 O -0.59 -17.90 15.92 -3.02 -0.05 -17.95 16 8 N -0.72 -12.61 5.45 -463.05 -2.52 -15.14 16 9 C 0.12 2.28 5.67 86.38 0.49 2.77 16 10 C -0.13 -2.04 4.14 30.59 0.13 -1.92 16 11 C -0.09 -1.54 4.94 30.59 0.15 -1.39 16 12 C 0.07 1.33 2.58 45.39 0.12 1.45 16 13 H 0.07 1.16 7.72 -2.39 -0.02 1.14 16 14 C -0.12 -1.97 6.50 31.98 0.21 -1.76 16 15 C -0.14 -3.02 6.94 31.77 0.22 -2.80 16 16 C 0.06 2.01 5.14 86.64 0.45 2.46 16 17 N -0.52 -15.10 4.60 -865.15 -3.98 -19.08 16 18 C 0.05 1.37 4.93 85.56 0.42 1.79 16 19 C 0.45 19.87 7.11 87.66 0.62 20.50 16 20 O -0.61 -33.37 14.00 -3.06 -0.04 -33.41 16 21 N -0.59 -27.18 5.09 -306.99 -1.56 -28.74 16 22 C -0.33 -18.89 10.16 84.04 0.85 -18.04 16 23 H 0.05 3.63 7.39 -2.91 -0.02 3.60 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 25 N -0.94 -56.11 13.96 21.66 0.30 -55.80 16 26 Si 0.96 37.39 27.74 68.60 1.90 39.29 16 27 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 28 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 29 H -0.23 -7.05 6.52 99.48 0.65 -6.40 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.07 0.63 6.56 -2.39 -0.02 0.62 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.00 7.96 -2.39 -0.02 0.99 16 35 H 0.09 0.65 6.57 -2.39 -0.02 0.64 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.58 7.57 -2.38 -0.02 0.57 16 38 H 0.41 5.18 7.89 -92.71 -0.73 4.44 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.32 6.19 -2.39 -0.01 1.30 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.32 8.06 -2.38 -0.02 1.30 16 47 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 1.79 8.00 -2.39 -0.02 1.77 16 50 H 0.03 1.01 6.64 -2.39 -0.02 1.00 16 51 H 0.12 2.90 5.35 -2.39 -0.01 2.89 16 52 H 0.07 1.83 8.01 -2.39 -0.02 1.81 16 53 H 0.39 14.54 5.76 -92.70 -0.53 14.00 16 54 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -82.20 418.06 -0.19 -82.38 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.44 Total: 39.31 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.20 Total: 9.14 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -7.76 Total: -118.77 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.09 Total: -51.36 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 1.90 Total: 39.29 kcal Total: -82.20 -0.19 -82.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266201820.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.455 kcal (2) G-P(sol) polarization free energy of solvation -82.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds