Wall clock time and date at job start Tue Mar 31 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47068 * 2 1 4 4 H 1.09001 * 109.47007 * 304.99666 * 3 2 1 5 5 C 1.52994 * 109.47246 * 64.99597 * 3 2 1 6 6 C 1.50703 * 109.47160 * 185.00060 * 3 2 1 7 7 O 1.21279 * 119.99936 * 359.97438 * 6 3 2 8 8 N 1.34778 * 120.00123 * 179.97438 * 6 3 2 9 9 C 1.46491 * 119.99992 * 179.97438 * 8 6 3 10 10 C 1.53000 * 109.47029 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46912 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46740 * 185.06794 * 11 10 9 13 13 H 1.08999 * 110.36509 * 57.32476 * 12 11 10 14 14 C 1.54377 * 110.41151 * 294.97246 * 12 11 10 15 15 C 1.54263 * 105.06134 * 217.36964 * 14 12 11 16 16 C 1.54380 * 105.05833 * 0.02562 * 15 14 12 17 17 N 1.48557 * 104.59800 * 23.85257 * 16 15 14 18 18 C 1.46898 * 111.00426 * 200.96181 * 17 16 15 19 19 C 1.50703 * 109.46791 * 279.39023 * 18 17 16 20 20 O 1.21293 * 119.99972 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99677 * 180.02562 * 19 18 17 22 22 C 1.37107 * 119.99731 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99512 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99715 * 179.97438 * 22 21 19 25 25 N 1.31416 * 120.00165 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99645 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47154 * 59.99894 * 26 24 22 28 28 H 1.48504 * 109.46801 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46818 * 299.99585 * 26 24 22 30 30 H 1.08996 * 109.46993 * 60.00777 * 1 2 3 31 31 H 1.09005 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47404 * 300.00221 * 1 2 3 33 33 H 1.08993 * 109.47561 * 239.99247 * 2 1 3 34 34 H 1.09005 * 109.46972 * 119.99429 * 2 1 3 35 35 H 1.09001 * 109.47061 * 60.00102 * 5 3 2 36 36 H 1.08996 * 109.47418 * 300.00116 * 5 3 2 37 37 H 1.09005 * 109.47051 * 180.02562 * 5 3 2 38 38 H 0.97003 * 119.99849 * 0.02562 * 8 6 3 39 39 H 1.09003 * 109.47674 * 299.99999 * 9 8 6 40 40 H 1.09003 * 109.47182 * 60.00246 * 9 8 6 41 41 H 1.09003 * 109.46758 * 299.99521 * 10 9 8 42 42 H 1.08994 * 109.47608 * 60.00342 * 10 9 8 43 43 H 1.09000 * 109.46897 * 305.06379 * 11 10 9 44 44 H 1.09000 * 109.47441 * 65.06839 * 11 10 9 45 45 H 1.08993 * 110.32500 * 336.26612 * 14 12 11 46 46 H 1.09002 * 110.32602 * 98.47451 * 14 12 11 47 47 H 1.08994 * 110.32559 * 118.89296 * 15 14 12 48 48 H 1.09003 * 110.32607 * 241.00726 * 15 14 12 49 49 H 1.08999 * 110.41295 * 142.63115 * 16 15 14 50 50 H 1.08999 * 110.41209 * 265.07504 * 16 15 14 51 51 H 1.08994 * 109.47202 * 39.38777 * 18 17 16 52 52 H 1.08998 * 109.47480 * 159.39244 * 18 17 16 53 53 H 0.96994 * 120.00180 * 359.97438 * 21 19 18 54 54 H 0.97002 * 119.99845 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3072 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2037 8 7 4.2149 2.6119 -0.1458 9 6 5.6749 2.6136 -0.2657 10 6 6.1849 4.0561 -0.2658 11 6 7.7097 4.0579 -0.3916 12 6 8.2302 5.4911 -0.2649 13 1 7.9127 5.9276 0.6821 14 6 7.7338 6.3506 -1.4473 15 6 8.9128 7.2861 -1.7856 16 6 10.0226 6.9127 -0.7795 17 7 9.7114 5.5160 -0.3802 18 6 10.3446 5.1816 0.9025 19 6 11.7922 4.8318 0.6718 20 8 12.2511 4.8580 -0.4507 21 7 12.5767 4.4888 1.7128 22 6 13.8938 4.1711 1.5030 23 1 14.3025 4.1953 0.5036 24 6 14.7026 3.8181 2.5762 25 7 14.2053 3.7892 3.7923 26 14 16.4974 3.3858 2.2905 27 1 17.1953 4.5467 1.6818 28 1 17.1373 3.0469 3.5870 29 1 16.5860 2.2196 1.3755 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.0698 1.5876 2.1491 36 1 0.5489 2.1253 1.3968 37 1 1.9981 3.1544 1.3070 38 1 3.7325 3.4510 -0.0816 39 1 6.1093 2.0751 0.5767 40 1 5.9636 2.1257 -1.1967 41 1 5.7506 4.5949 -1.1080 42 1 5.8962 4.5436 0.6653 43 1 8.1402 3.4438 0.3994 44 1 7.9948 3.6523 -1.3623 45 1 7.4957 5.7174 -2.3019 46 1 6.8611 6.9331 -1.1519 47 1 9.2534 7.1121 -2.8062 48 1 8.6183 8.3278 -1.6579 49 1 11.0011 6.9624 -1.2571 50 1 9.9877 7.5726 0.0873 51 1 10.2802 6.0380 1.5736 52 1 9.8319 4.3301 1.3498 53 1 12.2096 4.4675 2.6103 54 1 14.7701 3.5430 4.5415 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266201822.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:54 Heat of formation + Delta-G solvation = -123.454554 kcal Electronic energy + Delta-G solvation = -29217.494464 eV Core-core repulsion = 25186.897477 eV Total energy + Delta-G solvation = -4030.596988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.00361 -40.65823 -39.35052 -36.95920 -36.27038 -35.93464 -34.12161 -33.42434 -32.90830 -30.92852 -29.50292 -28.30320 -26.57081 -26.07606 -25.49480 -23.04363 -22.54554 -22.05092 -20.98546 -20.93788 -20.46432 -19.88325 -18.05778 -17.73624 -17.18501 -17.04694 -16.74253 -16.43374 -16.25074 -16.04878 -15.88514 -15.60202 -15.28987 -14.97700 -14.85144 -14.40716 -14.37472 -14.12090 -13.69958 -13.55415 -13.46047 -13.28117 -13.14370 -12.95860 -12.92633 -12.60085 -12.56309 -12.49011 -12.43454 -12.37567 -12.13122 -12.12263 -12.07826 -11.86637 -11.69651 -11.58792 -11.49594 -11.36032 -11.28964 -10.73928 -10.33614 -10.09397 -10.01093 -9.30784 -8.46843 -5.95676 1.38510 1.39732 1.50918 1.64900 2.06449 2.20130 2.28323 2.83067 3.19374 3.40815 3.67177 3.71966 3.83491 3.88559 3.97121 4.00332 4.08948 4.18522 4.28779 4.31213 4.37558 4.42217 4.44108 4.50117 4.53969 4.59933 4.61556 4.63974 4.74303 4.78568 4.82971 4.84306 4.98742 5.03327 5.04868 5.08715 5.10433 5.13620 5.22076 5.24269 5.31524 5.36733 5.39203 5.40904 5.41775 5.48313 5.52072 5.89857 6.04268 6.16139 6.58452 6.61212 7.13011 7.28904 7.56872 8.13712 8.70460 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.001872 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.283555 B =14953.725833 C =16658.768013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.122 0.878 5 C -0.143 4.143 6 C 0.505 3.495 7 O -0.594 6.594 8 N -0.715 5.715 9 C 0.119 3.881 10 C -0.108 4.108 11 C -0.101 4.101 12 C 0.061 3.939 13 H 0.066 0.934 14 C -0.109 4.109 15 C -0.118 4.118 16 C 0.034 3.966 17 N -0.509 5.509 18 C 0.049 3.951 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.577 5.577 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.274 1.274 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.418 0.582 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.045 0.955 51 H 0.070 0.930 52 H 0.103 0.897 53 H 0.395 0.605 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.160 4.518 -4.448 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.140 0.860 5 C -0.200 4.200 6 C 0.293 3.707 7 O -0.475 6.475 8 N -0.367 5.367 9 C -0.005 4.005 10 C -0.147 4.147 11 C -0.139 4.139 12 C -0.046 4.046 13 H 0.084 0.916 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.094 4.094 17 N -0.233 5.233 18 C -0.083 4.083 19 C 0.229 3.771 20 O -0.502 6.502 21 N -0.215 5.215 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.193 1.193 29 H -0.199 1.199 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.255 0.745 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.088 0.912 52 H 0.121 0.879 53 H 0.229 0.771 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.122 3.373 -5.446 30.796 hybrid contribution 1.170 0.198 1.119 1.631 sum -28.952 3.572 -4.328 29.491 Atomic orbital electron populations 1.21807 0.93364 1.02333 1.02979 1.21337 0.97084 0.94578 1.01669 1.21398 0.89054 0.99410 1.02612 0.85986 1.21851 1.03555 1.00583 0.94020 1.21457 0.91544 0.83136 0.74557 1.90702 1.71709 1.33489 1.51563 1.45922 1.07500 1.09165 1.74142 1.21275 0.80046 0.98410 1.00818 1.21624 0.94224 0.94282 1.04531 1.21378 0.95088 0.95444 1.02025 1.22802 0.86200 0.96388 0.99236 0.91566 1.22356 0.97807 0.97160 0.97315 1.22273 0.94406 1.00431 0.98486 1.23091 0.99663 0.88114 0.98558 1.64941 1.07219 1.24431 1.26749 1.21877 0.91785 1.02271 0.92382 1.20851 0.89187 0.82330 0.84706 1.90477 1.76508 1.58555 1.24699 1.41939 1.09781 1.60783 1.08967 1.19616 0.86741 1.44872 0.95134 0.90508 1.26029 1.04305 0.96737 0.94213 1.69669 1.38710 1.48567 0.99266 0.84998 0.76889 0.78737 0.77754 1.19629 1.19340 1.19897 0.91553 0.92607 0.91145 0.93241 0.93217 0.93537 0.89280 0.90390 0.74461 0.93460 0.93127 0.88900 0.89443 0.93234 0.92333 0.90698 0.88228 0.91897 0.89195 0.93302 0.93645 0.91188 0.87915 0.77129 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 71.98 0.70 -0.55 16 2 C -0.11 -1.56 4.75 30.59 0.15 -1.41 16 3 C -0.10 -1.17 2.72 -11.54 -0.03 -1.20 16 4 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 5 C -0.14 -0.99 8.84 71.98 0.64 -0.36 16 6 C 0.51 9.75 7.15 87.66 0.63 10.38 16 7 O -0.59 -18.08 15.92 -3.03 -0.05 -18.13 16 8 N -0.71 -9.95 5.45 -463.07 -2.52 -12.48 16 9 C 0.12 2.13 5.67 86.38 0.49 2.62 16 10 C -0.11 -1.40 5.08 30.60 0.16 -1.25 16 11 C -0.10 -2.11 4.83 30.60 0.15 -1.96 16 12 C 0.06 1.34 2.30 45.06 0.10 1.45 16 13 H 0.07 1.26 8.00 -2.39 -0.02 1.24 16 14 C -0.11 -1.84 5.70 31.49 0.18 -1.66 16 15 C -0.12 -2.51 7.00 31.49 0.22 -2.29 16 16 C 0.03 1.03 6.08 86.45 0.53 1.55 16 17 N -0.51 -16.67 4.55 -861.18 -3.92 -20.59 16 18 C 0.05 1.76 5.31 85.56 0.45 2.21 16 19 C 0.44 22.04 7.69 87.66 0.67 22.72 16 20 O -0.62 -35.83 15.31 -3.07 -0.05 -35.88 16 21 N -0.58 -30.76 5.29 -306.98 -1.62 -32.39 16 22 C -0.33 -19.61 9.68 84.04 0.81 -18.80 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 25 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 26 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.42 6.56 -2.39 -0.02 0.41 16 33 H 0.05 0.90 7.95 -2.39 -0.02 0.88 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.33 6.56 -2.39 -0.02 0.31 16 37 H 0.08 0.27 7.57 -2.38 -0.02 0.25 16 38 H 0.42 2.58 7.89 -92.71 -0.73 1.85 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 0.85 7.60 -2.39 -0.02 0.83 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 1.21 7.26 -2.39 -0.02 1.19 16 44 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 45 H 0.07 1.26 7.82 -2.39 -0.02 1.24 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 1.87 7.68 -2.39 -0.02 1.85 16 50 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 51 H 0.07 2.25 7.63 -2.39 -0.02 2.23 16 52 H 0.10 3.35 7.06 -2.39 -0.02 3.33 16 53 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 54 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -79.90 426.70 -0.13 -80.03 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.58 Total: 32.66 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.31 Total: 11.19 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -7.79 Total: -116.04 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.10 Total: -54.01 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -79.90 -0.13 -80.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266201822.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.423 kcal (2) G-P(sol) polarization free energy of solvation -79.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds