Wall clock time and date at job start Tue Mar 31 2020 23:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47159 * 2 1 4 4 H 1.08999 * 109.47341 * 185.24040 * 3 2 1 5 5 C 1.53007 * 109.47299 * 65.23710 * 3 2 1 6 6 C 1.53002 * 109.46880 * 65.76043 * 5 3 2 7 7 C 1.52998 * 109.46868 * 65.14006 * 6 5 3 8 8 C 1.52998 * 109.46647 * 185.14148 * 6 5 3 9 9 C 1.50703 * 109.46975 * 305.23722 * 3 2 1 10 10 O 1.21286 * 119.99804 * 110.01100 * 9 3 2 11 11 N 1.34772 * 120.00210 * 290.00678 * 9 3 2 12 12 C 1.46497 * 120.00192 * 174.99462 * 11 9 3 13 13 H 1.09002 * 112.84956 * 23.81097 * 12 11 9 14 14 C 1.53781 * 113.61368 * 155.00297 * 12 11 9 15 15 C 1.53777 * 87.07895 * 89.20421 * 14 12 11 16 16 H 1.09002 * 113.61593 * 270.87960 * 15 14 12 17 17 N 1.46905 * 113.61397 * 139.98128 * 15 14 12 18 18 C 1.46897 * 110.99689 * 154.99951 * 17 15 14 19 19 C 1.50708 * 109.46870 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99674 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99987 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00180 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99436 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00223 * 180.02562 * 22 21 19 25 25 N 1.31404 * 120.00187 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99757 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47278 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47126 * 120.00061 * 26 24 22 29 29 H 1.48502 * 109.46816 * 239.99711 * 26 24 22 30 30 C 1.53777 * 87.08492 * 25.43379 * 15 14 12 31 31 H 1.09000 * 109.46352 * 175.55603 * 1 2 3 32 32 H 1.08997 * 109.47011 * 295.55319 * 1 2 3 33 33 H 1.08992 * 109.47047 * 55.55723 * 1 2 3 34 34 H 1.09001 * 109.47389 * 239.99833 * 2 1 3 35 35 H 1.09002 * 109.47235 * 119.99753 * 2 1 3 36 36 H 1.08996 * 109.47043 * 185.76469 * 5 3 2 37 37 H 1.09001 * 109.46769 * 305.76284 * 5 3 2 38 38 H 1.09000 * 109.46976 * 305.13874 * 6 5 3 39 39 H 1.09003 * 109.47000 * 60.00409 * 7 6 5 40 40 H 1.09001 * 109.46635 * 179.97438 * 7 6 5 41 41 H 1.08992 * 109.47503 * 299.99522 * 7 6 5 42 42 H 1.08995 * 109.47639 * 64.63380 * 8 6 5 43 43 H 1.09005 * 109.46809 * 184.63257 * 8 6 5 44 44 H 1.08998 * 109.47437 * 304.62236 * 8 6 5 45 45 H 0.96998 * 119.99596 * 355.00838 * 11 9 3 46 46 H 1.08995 * 113.61533 * 334.65789 * 14 12 11 47 47 H 1.08997 * 113.61526 * 203.74870 * 14 12 11 48 48 H 1.00899 * 111.00005 * 278.95225 * 17 15 14 49 49 H 1.08999 * 109.47670 * 299.99695 * 18 17 15 50 50 H 1.08998 * 109.47492 * 60.00154 * 18 17 15 51 51 H 0.97005 * 120.00105 * 359.97438 * 21 19 18 52 52 H 0.96994 * 120.00303 * 179.97438 * 25 24 22 53 53 H 1.09000 * 113.61603 * 89.11396 * 30 15 14 54 54 H 1.09001 * 113.61908 * 220.02486 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4439 -0.0939 5 6 1.6404 2.1248 1.3099 6 6 2.3692 1.4552 2.4767 7 6 3.8744 1.6940 2.3422 8 6 1.8741 2.0506 3.7963 9 6 1.4345 2.1893 -1.1605 10 8 0.6090 3.0550 -0.9602 11 7 1.8104 1.8953 -2.4209 12 6 1.1442 2.5425 -3.5538 13 1 0.6869 3.4955 -3.2878 14 6 2.0107 2.6079 -4.8226 15 6 1.4267 1.2356 -5.1972 16 1 1.9991 0.3954 -4.8041 17 7 1.1178 1.0979 -6.6268 18 6 1.1411 -0.3124 -7.0369 19 6 0.8210 -0.4137 -8.5061 20 8 0.5951 0.5903 -9.1481 21 7 0.7846 -1.6199 -9.1064 22 6 0.4939 -1.7120 -10.4430 23 1 0.2936 -0.8179 -11.0148 24 6 0.4559 -2.9555 -11.0617 25 7 0.6991 -4.0433 -10.3658 26 14 0.0605 -3.0808 -12.8831 27 1 -0.1718 -1.7215 -13.4338 28 1 1.1991 -3.7157 -13.5943 29 1 -1.1607 -3.9050 -13.0688 30 6 0.2077 1.6070 -4.3366 31 1 -0.3632 -1.0246 -0.0796 32 1 -0.3633 0.4433 0.9271 33 1 -0.3633 0.5812 -0.8474 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9130 3.1793 1.2682 37 1 0.5637 2.0333 1.4534 38 1 2.1686 0.3839 2.4636 39 1 4.0749 2.7653 2.3554 40 1 4.3935 1.2173 3.1737 41 1 4.2271 1.2698 1.4022 42 1 0.8198 1.8093 3.9309 43 1 2.4506 1.6335 4.6220 44 1 1.9995 3.1332 3.7761 45 1 2.5220 1.2551 -2.5779 46 1 3.0817 2.5865 -4.6214 47 1 1.7234 3.4062 -5.5069 48 1 0.2302 1.5241 -6.8476 49 1 2.1315 -0.7284 -6.8518 50 1 0.4001 -0.8698 -6.4640 51 1 0.9649 -2.4228 -8.5928 52 1 0.6723 -4.9114 -10.7976 53 1 -0.5726 2.1317 -4.8880 54 1 -0.1768 0.7776 -3.7430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266630740.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:14 Heat of formation + Delta-G solvation = -104.219251 kcal Electronic energy + Delta-G solvation = -29488.635203 eV Core-core repulsion = 25458.872321 eV Total energy + Delta-G solvation = -4029.762882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54721 -40.31789 -39.66336 -37.87462 -36.12143 -35.40452 -34.72011 -33.37544 -33.07132 -29.93034 -28.46061 -27.96883 -26.64475 -26.44364 -25.75199 -24.22954 -23.39165 -21.54126 -21.14015 -20.43610 -19.92284 -19.78096 -18.06612 -17.70081 -17.12741 -16.89560 -16.76090 -16.44710 -16.29898 -16.01101 -15.70962 -15.46153 -15.10428 -14.87014 -14.72218 -14.34652 -14.26637 -14.14253 -13.87166 -13.53211 -13.47232 -13.41341 -13.26831 -13.10785 -13.02974 -12.83930 -12.75319 -12.60956 -12.45403 -12.40069 -12.11510 -12.06638 -11.76738 -11.70996 -11.60003 -11.51478 -11.35500 -11.34608 -11.20923 -10.66291 -10.32972 -10.03332 -10.01133 -9.23114 -8.46922 -5.95499 1.36695 1.42235 1.56282 1.65822 2.05630 2.17796 2.29470 2.95536 3.20514 3.44704 3.61131 3.64613 3.73434 3.75604 3.90465 3.99265 4.07511 4.16516 4.18839 4.30222 4.32944 4.36120 4.51679 4.53089 4.58296 4.62239 4.69388 4.73090 4.80454 4.84810 4.85763 4.87792 4.98334 5.00063 5.03930 5.07742 5.11425 5.13835 5.16540 5.19083 5.25451 5.33248 5.41341 5.42341 5.54127 5.59428 5.61668 5.93965 6.17173 6.40113 6.59494 6.60547 7.12971 7.30098 7.56631 8.12157 8.70620 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023353 B = 0.001675 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.703318 B =16707.774873 C =17325.947823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.120 0.880 5 C -0.092 4.092 6 C -0.094 4.094 7 C -0.151 4.151 8 C -0.149 4.149 9 C 0.519 3.481 10 O -0.584 6.584 11 N -0.701 5.701 12 C 0.126 3.874 13 H 0.085 0.915 14 C -0.124 4.124 15 C 0.070 3.930 16 H 0.114 0.886 17 N -0.671 5.671 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 C -0.176 4.176 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.415 0.585 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.345 0.655 49 H 0.107 0.893 50 H 0.065 0.935 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.085 0.915 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 5.601 28.661 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.148 4.148 3 C -0.125 4.125 4 H 0.137 0.863 5 C -0.130 4.130 6 C -0.112 4.112 7 C -0.208 4.208 8 C -0.206 4.206 9 C 0.308 3.692 10 O -0.464 6.464 11 N -0.353 5.353 12 C 0.019 3.981 13 H 0.103 0.897 14 C -0.163 4.163 15 C -0.040 4.040 16 H 0.131 0.869 17 N -0.302 5.302 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.196 1.196 30 C -0.216 4.216 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.252 0.748 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.165 0.835 49 H 0.125 0.875 50 H 0.083 0.917 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.104 0.896 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.540 6.781 28.095 29.633 hybrid contribution -1.000 -0.894 -0.635 1.484 sum 5.540 5.887 27.460 28.625 Atomic orbital electron populations 1.21847 0.96705 1.01703 1.01165 1.21560 0.95413 0.93280 1.04503 1.21505 1.02607 0.96219 0.92130 0.86265 1.21428 1.00345 0.98762 0.92503 1.21168 0.95595 1.00653 0.93831 1.21925 0.94854 1.01583 1.02428 1.21842 1.01034 1.00720 0.97043 1.21221 0.81130 0.82104 0.84759 1.90684 1.35696 1.34276 1.85710 1.45629 1.39372 1.45696 1.04557 1.21544 0.94677 0.96286 0.85596 0.89704 1.23372 1.00437 0.97792 0.94663 1.23233 0.96711 0.98760 0.85261 0.86851 1.60051 1.39561 1.13634 1.16943 1.21583 1.03063 0.91240 0.90772 1.20976 0.82596 0.83137 0.90956 1.90494 1.55952 1.37022 1.67696 1.41939 1.62025 1.07485 1.09585 1.19704 1.46469 0.94114 0.86140 0.90429 1.26016 0.96633 0.94080 1.04449 1.69665 1.49319 0.98629 1.38427 0.84879 0.78272 0.78190 0.77044 1.19898 1.19551 1.19620 1.24127 0.97965 1.00276 0.99256 0.91725 0.92654 0.95034 0.90156 0.88564 0.93143 0.92489 0.89823 0.93332 0.92030 0.91591 0.93009 0.91798 0.93347 0.74835 0.89374 0.89102 0.83542 0.87478 0.91694 0.76925 0.91292 0.89625 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.34 71.98 0.67 -1.56 16 2 C -0.11 -1.04 5.59 30.59 0.17 -0.87 16 3 C -0.10 -1.22 2.37 -11.54 -0.03 -1.25 16 4 H 0.12 0.88 6.32 -2.39 -0.02 0.86 16 5 C -0.09 -1.28 3.33 30.60 0.10 -1.18 16 6 C -0.09 -0.89 2.80 -10.79 -0.03 -0.92 16 7 C -0.15 -1.19 8.96 71.98 0.64 -0.54 16 8 C -0.15 -1.50 9.19 71.98 0.66 -0.84 16 9 C 0.52 9.71 5.47 87.66 0.48 10.19 16 10 O -0.58 -16.34 15.61 -3.05 -0.05 -16.38 16 11 N -0.70 -10.57 5.26 -440.03 -2.32 -12.89 16 12 C 0.13 2.36 4.35 45.52 0.20 2.56 16 13 H 0.08 1.96 7.42 -2.39 -0.02 1.95 16 14 C -0.12 -2.28 7.63 31.12 0.24 -2.04 16 15 C 0.07 1.45 4.06 45.44 0.18 1.63 16 16 H 0.11 1.90 7.87 -2.39 -0.02 1.88 16 17 N -0.67 -20.01 6.24 -492.85 -3.08 -23.09 16 18 C 0.07 2.15 6.01 85.56 0.51 2.66 16 19 C 0.44 20.51 7.82 87.66 0.69 21.20 16 20 O -0.63 -34.66 15.78 -3.06 -0.05 -34.71 16 21 N -0.57 -29.15 5.29 -306.98 -1.62 -30.78 16 22 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 26 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 30 C -0.18 -3.52 7.50 31.12 0.23 -3.29 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.82 6.67 -2.39 -0.02 0.81 16 33 H 0.03 0.60 6.89 -2.39 -0.02 0.58 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.61 6.27 -2.39 -0.01 0.60 16 36 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.06 0.99 6.41 -2.39 -0.02 0.97 16 38 H 0.08 0.64 6.27 -2.39 -0.01 0.63 16 39 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 0.40 6.45 -2.39 -0.02 0.38 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.41 3.87 8.71 -92.71 -0.81 3.07 16 46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.34 11.16 7.90 -89.69 -0.71 10.45 16 49 H 0.11 3.07 8.13 -2.39 -0.02 3.05 16 50 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.40 19.02 7.90 -92.70 -0.73 18.29 16 52 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 53 H 0.09 1.86 7.82 -2.39 -0.02 1.84 16 54 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.41 425.83 -0.13 -72.54 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -1.33 Total: 41.97 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.01 Total: 7.38 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -6.73 Total: -115.62 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.10 Total: -51.09 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.41 -0.13 -72.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266630740.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.683 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds