Wall clock time and date at job start Wed Apr 1 2020 00:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47369 * 2 1 4 4 N 1.46502 * 109.46819 * 119.99709 * 2 1 3 5 5 C 1.36943 * 119.99973 * 118.30076 * 4 2 1 6 6 H 1.07995 * 120.00003 * 150.46024 * 5 4 2 7 7 C 1.38818 * 119.99868 * 330.46201 * 5 4 2 8 8 N 1.31620 * 119.99770 * 341.57677 * 7 5 4 9 9 Si 1.86792 * 119.99817 * 161.57617 * 7 5 4 10 10 H 1.48502 * 109.47086 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47299 * 209.99925 * 9 7 5 12 12 H 1.48505 * 109.47421 * 329.99882 * 9 7 5 13 13 C 1.46494 * 120.00429 * 298.02364 * 4 2 1 14 14 C 1.53001 * 109.46943 * 89.99963 * 13 4 2 15 15 C 1.53004 * 109.47128 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.47263 * 180.02562 * 15 14 13 17 17 C 1.34772 * 119.99939 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.50708 * 120.00016 * 180.02562 * 17 16 15 20 20 H 1.08996 * 110.21854 * 58.06374 * 19 17 16 21 21 C 1.54482 * 110.24059 * 296.04633 * 19 17 16 22 22 C 1.54624 * 101.76570 * 266.41373 * 21 19 17 23 23 C 1.51282 * 104.19497 * 335.20789 * 22 21 19 24 24 O 1.21282 * 124.93764 * 196.27538 * 23 22 21 25 25 N 1.34413 * 110.11645 * 16.24936 * 23 22 21 26 26 C 1.46499 * 124.34928 * 180.43258 * 25 23 22 27 27 C 1.53005 * 109.47165 * 299.97465 * 26 25 23 28 28 C 1.52997 * 109.47468 * 59.97427 * 26 25 23 29 29 H 1.09004 * 109.47262 * 300.00439 * 1 2 3 30 30 H 1.09003 * 109.47067 * 60.00232 * 1 2 3 31 31 H 1.09000 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47215 * 239.99673 * 2 1 3 33 33 H 1.09000 * 109.47405 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46837 * 299.99908 * 3 2 1 35 35 H 1.09004 * 109.47287 * 59.99576 * 3 2 1 36 36 H 0.96999 * 119.99651 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47472 * 210.00045 * 13 4 2 38 38 H 1.09001 * 109.47197 * 330.00555 * 13 4 2 39 39 H 1.09004 * 109.47545 * 300.00485 * 14 13 4 40 40 H 1.09001 * 109.47369 * 60.00603 * 14 13 4 41 41 H 1.09003 * 109.46982 * 299.99832 * 15 14 13 42 42 H 1.08994 * 109.47124 * 60.00163 * 15 14 13 43 43 H 0.96999 * 119.99619 * 0.02562 * 16 15 14 44 44 H 1.09005 * 110.97374 * 24.53880 * 21 19 17 45 45 H 1.09003 * 110.96943 * 148.29679 * 21 19 17 46 46 H 1.09000 * 110.48872 * 216.52791 * 22 21 19 47 47 H 1.09000 * 110.59871 * 93.93724 * 22 21 19 48 48 H 1.08997 * 109.47276 * 179.97438 * 26 25 23 49 49 H 1.08997 * 109.46755 * 60.00009 * 27 26 25 50 50 H 1.08998 * 109.47010 * 179.97438 * 27 26 25 51 51 H 1.08997 * 109.46607 * 300.00180 * 27 26 25 52 52 H 1.08997 * 109.47171 * 300.00431 * 28 26 25 53 53 H 1.09003 * 109.47174 * 59.99978 * 28 26 25 54 54 H 1.08998 * 109.47577 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7766 -1.8240 1.0710 6 1 3.5114 -2.0680 1.8239 7 6 2.6008 -2.6592 -0.0238 8 7 1.4983 -2.5838 -0.7387 9 14 3.9289 -3.8901 -0.4822 10 1 3.6794 -5.1730 0.2228 11 1 3.9066 -4.1191 -1.9493 12 1 5.2567 -3.3568 -0.0846 13 6 1.7005 -0.1653 2.5263 14 6 0.3892 -0.7816 3.0181 15 6 0.0569 -0.2326 4.4070 16 7 -1.1983 -0.8231 4.8781 17 6 -1.6906 -0.4846 6.0861 18 8 -1.0944 0.3086 6.7834 19 6 -2.9816 -1.0925 6.5711 20 1 -2.9002 -2.1791 6.5962 21 6 -4.1509 -0.6632 5.6573 22 6 -4.6898 0.5820 6.3990 23 6 -4.2692 0.3685 7.8364 24 8 -4.7257 0.9639 8.7894 25 7 -3.3165 -0.5772 7.9038 26 6 -2.6930 -1.0353 9.1478 27 6 -2.0044 0.1441 9.8375 28 6 -3.7657 -1.6121 10.0738 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.3756 -3.1671 -1.5039 37 1 2.5032 -0.4190 3.2186 38 1 1.5952 0.9183 2.4735 39 1 -0.4136 -0.5280 2.3258 40 1 0.4944 -1.8653 3.0710 41 1 0.8597 -0.4860 5.0995 42 1 -0.0484 0.8510 4.3537 43 1 -1.6745 -1.4584 4.3209 44 1 -3.7921 -0.3998 4.6623 45 1 -4.9100 -1.4435 5.6027 46 1 -5.7760 0.6312 6.3226 47 1 -4.2387 1.4907 6.0005 48 1 -1.9553 -1.8055 8.9224 49 1 -2.7420 0.9142 10.0629 50 1 -1.5408 -0.1966 10.7633 51 1 -1.2401 0.5550 9.1778 52 1 -4.5034 -0.8420 10.2992 53 1 -4.2563 -2.4523 9.5824 54 1 -3.3017 -1.9533 10.9991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267313510.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:58 Heat of formation + Delta-G solvation = -76.351793 kcal Electronic energy + Delta-G solvation = -30846.167371 eV Core-core repulsion = 26817.612912 eV Total energy + Delta-G solvation = -4028.554459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.08734 -40.14847 -38.64009 -37.37470 -36.27244 -35.96012 -33.84223 -33.18537 -31.11282 -30.97643 -29.19026 -28.12685 -27.66758 -26.73890 -24.86034 -23.75881 -23.35437 -22.40772 -21.51536 -20.75016 -19.84992 -18.71414 -18.59522 -17.83069 -17.09663 -16.68293 -16.59966 -16.39801 -16.05640 -15.88415 -15.35544 -15.20877 -14.92285 -14.77084 -14.65237 -14.36624 -14.29218 -14.19577 -13.92055 -13.86146 -13.36251 -13.16019 -13.09957 -13.02603 -12.85929 -12.80060 -12.71088 -12.59527 -12.50366 -12.37774 -12.31651 -12.14265 -12.09764 -12.01387 -11.76309 -11.55201 -11.16064 -11.10688 -11.05422 -10.67272 -10.37021 -10.04076 -9.76076 -8.53752 -7.78851 -5.22639 1.47229 1.48226 1.52425 1.58054 1.59293 1.82988 2.33986 2.57012 3.27024 3.35639 3.46375 3.67818 3.73448 3.88066 3.97410 4.12073 4.16113 4.21109 4.27649 4.32991 4.47003 4.53337 4.58876 4.67558 4.72091 4.75402 4.76345 4.80128 4.86831 4.89406 4.91737 4.95039 4.96166 5.00509 5.04475 5.05237 5.18846 5.19636 5.24879 5.29946 5.40378 5.43838 5.50010 5.60878 5.64372 5.75249 5.88003 6.08471 6.08631 6.52839 6.59339 7.12094 7.26416 7.28653 8.01084 8.47343 9.24707 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.002276 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.590521 B =12299.716605 C =12768.339250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.174 3.826 3 C -0.154 4.154 4 N -0.596 5.596 5 C -0.261 4.261 6 H 0.055 0.945 7 C -0.036 4.036 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.149 3.851 14 C -0.132 4.132 15 C 0.134 3.866 16 N -0.711 5.711 17 C 0.495 3.505 18 O -0.572 6.572 19 C 0.111 3.889 20 H 0.148 0.852 21 C -0.109 4.109 22 C -0.156 4.156 23 C 0.511 3.489 24 O -0.572 6.572 25 N -0.592 5.592 26 C 0.150 3.850 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.247 0.753 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.415 0.585 44 H 0.109 0.891 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.043 0.957 50 H 0.079 0.921 51 H 0.048 0.952 52 H 0.046 0.954 53 H 0.069 0.931 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.064 1.118 12.316 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.067 3.933 3 C -0.213 4.213 4 N -0.317 5.317 5 C -0.392 4.392 6 H 0.073 0.927 7 C -0.233 4.233 8 N -0.556 5.556 9 Si 0.779 3.221 10 H -0.214 1.214 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.022 3.978 14 C -0.172 4.172 15 C 0.010 3.990 16 N -0.364 5.364 17 C 0.281 3.719 18 O -0.451 6.451 19 C 0.004 3.996 20 H 0.165 0.835 21 C -0.147 4.147 22 C -0.196 4.196 23 C 0.301 3.699 24 O -0.451 6.451 25 N -0.324 5.324 26 C 0.048 3.952 27 C -0.219 4.219 28 C -0.214 4.214 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.252 0.748 44 H 0.128 0.872 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.062 0.938 50 H 0.098 0.902 51 H 0.067 0.933 52 H 0.065 0.935 53 H 0.088 0.912 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.844 1.875 13.237 18.539 hybrid contribution 0.914 -0.895 -0.615 1.419 sum -11.929 0.980 12.622 17.395 Atomic orbital electron populations 1.22016 0.97458 1.00438 0.98981 1.20255 0.92700 0.89823 0.90486 1.22223 1.00018 0.98101 1.00971 1.44117 1.60100 1.27100 1.00421 1.19303 1.12140 0.99838 1.07901 0.92714 1.25534 0.97894 0.99079 1.00802 1.70138 1.24484 1.40714 1.20301 0.85572 0.80245 0.79621 0.76668 1.21411 1.22155 1.20554 1.20803 0.93992 0.96476 0.86533 1.22365 1.00375 1.00483 0.94022 1.21186 0.85349 0.97482 0.95017 1.45985 1.25119 1.46744 1.18505 1.21517 0.87461 0.81716 0.81229 1.90705 1.61735 1.36134 1.56536 1.21902 0.92638 1.01614 0.83489 0.83479 1.22743 0.95876 0.97864 0.98232 1.22430 1.05083 1.00944 0.91149 1.21449 0.78618 0.77684 0.92188 1.90659 1.59624 1.50894 1.43960 1.48253 1.38089 1.39636 1.06443 1.21045 0.94964 0.96297 0.82880 1.22094 1.00271 0.98648 1.00872 1.22096 0.98678 1.00832 0.99791 0.93444 0.94210 0.93878 0.92439 0.94571 0.92355 0.92774 0.94375 0.94522 0.92742 0.91226 0.93336 0.93020 0.92206 0.74809 0.87243 0.85329 0.85824 0.88302 0.88341 0.93825 0.90214 0.93335 0.93506 0.91162 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.11 71.98 0.58 -4.42 16 2 C 0.17 7.46 2.39 44.99 0.11 7.57 16 3 C -0.15 -5.49 9.13 71.98 0.66 -4.83 16 4 N -0.60 -26.86 2.41 -678.06 -1.64 -28.49 16 5 C -0.26 -13.38 9.57 84.03 0.80 -12.58 16 6 H 0.06 2.83 7.89 -2.91 -0.02 2.81 16 7 C -0.04 -1.88 4.85 84.86 0.41 -1.47 16 8 N -0.91 -48.89 10.41 21.65 0.23 -48.67 16 9 Si 0.95 42.82 29.59 68.60 2.03 44.85 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.15 5.45 5.14 86.38 0.44 5.89 16 14 C -0.13 -4.11 5.38 30.60 0.16 -3.95 16 15 C 0.13 3.50 5.67 86.38 0.49 3.99 16 16 N -0.71 -14.28 5.31 -463.05 -2.46 -16.75 16 17 C 0.50 10.76 7.13 87.66 0.63 11.39 16 18 O -0.57 -17.80 15.08 -3.02 -0.05 -17.85 16 19 C 0.11 1.58 3.45 44.70 0.15 1.74 16 20 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 21 C -0.11 -0.97 6.68 31.65 0.21 -0.76 16 22 C -0.16 -2.30 6.85 30.59 0.21 -2.09 16 23 C 0.51 11.96 7.41 87.90 0.65 12.61 16 24 O -0.57 -17.92 15.12 -3.03 -0.05 -17.96 16 25 N -0.59 -11.79 2.02 -774.53 -1.57 -13.36 16 26 C 0.15 2.94 3.33 44.99 0.15 3.09 16 27 C -0.16 -3.83 9.20 71.98 0.66 -3.17 16 28 C -0.16 -2.60 9.20 71.98 0.66 -1.93 16 29 H 0.05 1.60 6.10 -2.38 -0.01 1.58 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.90 7.40 -2.39 -0.02 1.88 16 32 H 0.06 2.94 5.86 -2.39 -0.01 2.93 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.74 6.60 -2.38 -0.02 1.72 16 36 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 37 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 38 H 0.05 1.83 6.32 -2.39 -0.02 1.81 16 39 H 0.07 2.18 5.43 -2.38 -0.01 2.16 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.42 6.18 8.45 -92.71 -0.78 5.40 16 44 H 0.11 0.79 7.67 -2.38 -0.02 0.77 16 45 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.10 1.64 8.07 -2.39 -0.02 1.62 16 49 H 0.04 1.23 6.78 -2.39 -0.02 1.21 16 50 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.05 1.39 6.82 -2.39 -0.02 1.37 16 52 H 0.05 1.03 6.80 -2.39 -0.02 1.01 16 53 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 54 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.18 417.13 3.59 -66.59 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.10 Total: 20.56 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.99 Total: 11.07 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.44 Total: -107.26 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.09 Total: -35.81 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -70.18 3.59 -66.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267313510.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.761 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds