Wall clock time and date at job start Tue Mar 31 2020 23:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47564 * 2 1 4 4 H 1.09004 * 109.47118 * 54.36508 * 3 2 1 5 5 C 1.53003 * 109.46707 * 294.36958 * 3 2 1 6 6 N 1.46502 * 109.46789 * 184.99961 * 5 3 2 7 7 C 1.34779 * 119.99819 * 180.27523 * 6 5 3 8 8 O 1.21289 * 119.99772 * 359.72174 * 7 6 5 9 9 C 1.50698 * 120.00072 * 179.71969 * 7 6 5 10 10 C 1.53008 * 109.46801 * 60.00306 * 9 7 6 11 11 C 1.52990 * 109.47340 * 300.00166 * 9 7 6 12 12 C 1.53000 * 109.47089 * 299.99881 * 11 9 7 13 13 C 1.53002 * 109.47173 * 299.99552 * 12 11 9 14 14 C 1.53004 * 109.46735 * 60.00322 * 13 12 11 15 15 C 1.53000 * 109.47027 * 299.99767 * 14 13 12 16 16 N 1.46894 * 109.47413 * 174.36957 * 3 2 1 17 17 C 1.46900 * 110.99961 * 273.38477 * 16 3 2 18 18 C 1.50700 * 109.47271 * 174.78458 * 17 16 3 19 19 O 1.21294 * 120.00078 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00316 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00537 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99337 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00301 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99910 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00055 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47195 * 89.99521 * 25 23 21 27 27 H 1.48505 * 109.47338 * 209.99795 * 25 23 21 28 28 H 1.48505 * 109.47127 * 329.99627 * 25 23 21 29 29 H 1.08999 * 109.47052 * 65.81115 * 1 2 3 30 30 H 1.09004 * 109.47402 * 185.81458 * 1 2 3 31 31 H 1.09008 * 109.47015 * 305.81127 * 1 2 3 32 32 H 1.09004 * 109.47203 * 239.99615 * 2 1 3 33 33 H 1.09002 * 109.47382 * 119.99965 * 2 1 3 34 34 H 1.08999 * 109.47395 * 65.00288 * 5 3 2 35 35 H 1.08994 * 109.47113 * 304.99581 * 5 3 2 36 36 H 0.96997 * 120.00462 * 359.97438 * 6 5 3 37 37 H 1.09004 * 109.46979 * 60.00097 * 10 9 7 38 38 H 1.09004 * 109.46565 * 179.97438 * 10 9 7 39 39 H 1.08992 * 109.46623 * 299.99577 * 10 9 7 40 40 H 1.08999 * 109.47282 * 60.00218 * 11 9 7 41 41 H 1.09003 * 109.46997 * 179.97438 * 11 9 7 42 42 H 1.09003 * 109.46762 * 180.02562 * 12 11 9 43 43 H 1.08995 * 109.47286 * 59.99823 * 12 11 9 44 44 H 1.08995 * 109.47236 * 300.00302 * 13 12 11 45 45 H 1.09000 * 109.46960 * 180.02562 * 13 12 11 46 46 H 1.08993 * 109.47027 * 179.97438 * 14 13 12 47 47 H 1.09003 * 109.47072 * 59.99744 * 14 13 12 48 48 H 1.08995 * 109.47286 * 300.00230 * 15 14 13 49 49 H 1.08997 * 109.47174 * 179.97438 * 15 14 13 50 50 H 1.00902 * 110.99935 * 149.43148 * 16 3 2 51 51 H 1.09005 * 109.46794 * 294.78195 * 17 16 3 52 52 H 1.08993 * 109.47380 * 54.78095 * 17 16 3 53 53 H 0.97003 * 120.00014 * 359.97438 * 20 18 17 54 54 H 0.97000 * 119.99929 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 0.8353 5 6 1.6489 2.1216 -1.3140 6 7 2.2384 3.4618 -1.3653 7 6 2.0224 4.2525 -2.4352 8 8 1.3442 3.8525 -3.3578 9 6 2.6235 5.6335 -2.4852 10 6 4.1479 5.5293 -2.4043 11 6 2.1053 6.4583 -1.3055 12 6 0.5810 6.5624 -1.3865 13 6 0.1853 7.2438 -2.6980 14 6 0.7035 6.4189 -3.8779 15 6 2.2278 6.3148 -3.7969 16 7 3.5027 1.4446 0.1359 17 6 3.9001 1.4093 1.5497 18 6 5.3987 1.2834 1.6472 19 8 6.0696 1.2281 0.6383 20 7 5.9934 1.2323 2.8556 21 6 7.3566 1.1173 2.9444 22 1 7.9539 1.0672 2.0460 23 6 7.9697 1.0641 4.1902 24 7 7.2428 1.1245 5.2833 25 14 9.8271 0.9066 4.3112 26 1 10.4375 2.2599 4.3445 27 1 10.1819 0.1727 5.5525 28 1 10.3385 0.1618 3.1325 29 1 -0.3633 0.4211 -0.9374 30 1 -0.3634 -1.0224 0.1041 31 1 -0.3633 0.6014 0.8335 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5633 2.1997 -1.3736 35 1 2.0173 1.5304 -2.1523 36 1 2.7805 3.7818 -0.6274 37 1 4.5171 4.9417 -3.2449 38 1 4.5827 6.5282 -2.4409 39 1 4.4297 5.0440 -1.4699 40 1 2.3872 5.9730 -0.3712 41 1 2.5405 7.4571 -1.3415 42 1 0.2119 7.1505 -0.5462 43 1 0.1462 5.5636 -1.3504 44 1 0.6201 8.2426 -2.7342 45 1 -0.9006 7.3184 -2.7555 46 1 0.4213 6.9040 -4.8122 47 1 0.2687 5.4200 -3.8417 48 1 2.6627 7.3136 -3.8330 49 1 2.5970 5.7267 -4.6371 50 1 3.9083 2.2401 -0.3340 51 1 3.5800 2.3286 2.0401 52 1 3.4312 0.5549 2.0376 53 1 5.4569 1.2769 3.6625 54 1 7.6709 1.0877 6.1530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269460786.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:52 Heat of formation + Delta-G solvation = -125.193629 kcal Electronic energy + Delta-G solvation = -30968.822701 eV Core-core repulsion = 26938.150302 eV Total energy + Delta-G solvation = -4030.672400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84169 -40.24408 -38.98693 -37.88838 -35.97634 -35.22790 -33.88504 -33.56753 -33.19224 -31.63732 -29.57563 -27.69581 -27.39843 -25.85588 -24.88138 -23.69724 -23.39075 -21.62818 -21.40963 -21.13028 -20.28170 -19.87658 -18.05307 -17.53037 -17.28797 -16.84749 -16.58788 -16.34978 -16.28277 -15.84975 -15.55819 -15.34769 -15.22915 -14.96571 -14.85539 -14.50062 -14.37640 -14.23840 -13.92764 -13.64536 -13.48959 -13.22704 -13.19580 -13.09957 -12.98997 -12.88073 -12.78229 -12.64113 -12.47912 -12.43527 -12.38775 -12.12289 -12.05312 -11.94881 -11.60145 -11.51020 -11.47866 -11.06117 -10.95777 -10.48244 -10.32770 -10.08583 -9.99724 -9.36159 -8.45695 -5.93862 1.38312 1.42597 1.54770 1.64123 2.06939 2.14346 2.29547 2.84858 3.21948 3.47238 3.54419 3.61741 3.69046 3.77314 4.02770 4.08644 4.19647 4.23804 4.25492 4.30468 4.39289 4.41685 4.46357 4.51884 4.58034 4.59783 4.61165 4.69132 4.69743 4.76563 4.80415 4.82784 4.93937 4.95454 5.05319 5.11015 5.18030 5.22325 5.25258 5.28770 5.31227 5.33122 5.36477 5.41203 5.42444 5.48930 5.65625 5.88280 6.09358 6.34800 6.44530 6.61857 7.14537 7.21827 7.58385 8.14057 8.71620 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.002617 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.965871 B =10698.182848 C =12094.632381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.085 3.915 4 H 0.069 0.931 5 C 0.124 3.876 6 N -0.725 5.725 7 C 0.526 3.474 8 O -0.569 6.569 9 C -0.076 4.076 10 C -0.143 4.143 11 C -0.105 4.105 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.134 4.134 15 C -0.091 4.091 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.403 0.597 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.050 0.950 50 H 0.343 0.657 51 H 0.073 0.927 52 H 0.104 0.896 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.523 11.497 -9.376 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.024 4.024 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.377 5.377 7 C 0.314 3.686 8 O -0.449 6.449 9 C -0.079 4.079 10 C -0.201 4.201 11 C -0.143 4.143 12 C -0.159 4.159 13 C -0.152 4.152 14 C -0.171 4.171 15 C -0.129 4.129 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.069 0.931 50 H 0.164 0.836 51 H 0.091 0.909 52 H 0.122 0.878 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.450 10.473 -10.577 22.185 hybrid contribution 0.875 0.474 1.069 1.461 sum -15.575 10.947 -9.509 21.280 Atomic orbital electron populations 1.21789 0.94015 1.02554 1.02227 1.21477 0.96261 0.94608 1.02539 1.21863 0.86775 0.97458 0.96333 0.91340 1.21528 0.98747 0.82205 0.97482 1.46068 1.53727 1.16170 1.21761 1.20944 0.79291 0.87399 0.81001 1.90605 1.40766 1.75725 1.37766 1.20888 0.96700 0.91108 0.99173 1.21895 0.92070 1.03927 1.02194 1.21650 0.95948 1.00975 0.95691 1.21562 0.95489 1.00334 0.98512 1.21522 1.00582 0.99220 0.93924 1.21747 0.95644 1.01181 0.98520 1.21370 0.96567 1.00421 0.94511 1.59987 1.08790 1.50465 1.12139 1.21606 0.91217 1.03224 0.90756 1.20870 0.91057 0.82285 0.83182 1.90506 1.67045 1.56541 1.36711 1.41920 1.07254 1.64734 1.07120 1.19631 0.83480 1.49324 0.93676 0.90451 1.25983 1.04595 0.96437 0.94126 1.69662 1.37788 1.50361 0.98271 0.84975 0.77230 0.78646 0.77794 1.19521 1.19655 1.19975 0.92407 0.91825 0.91843 0.92273 0.91856 0.89902 0.92467 0.76058 0.93106 0.89338 0.92144 0.91069 0.88857 0.90295 0.93966 0.90733 0.92039 0.91917 0.91888 0.89516 0.93119 0.83643 0.90915 0.87785 0.76968 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.54 71.98 0.69 -1.69 16 2 C -0.11 -2.32 5.65 30.59 0.17 -2.14 16 3 C 0.09 1.84 2.26 44.92 0.10 1.94 16 4 H 0.07 1.27 7.83 -2.39 -0.02 1.25 16 5 C 0.12 2.74 4.95 86.38 0.43 3.17 16 6 N -0.72 -15.49 4.76 -463.05 -2.20 -17.69 16 7 C 0.53 12.54 4.97 87.66 0.44 12.97 16 8 O -0.57 -17.36 13.66 -3.06 -0.04 -17.41 16 9 C -0.08 -1.39 0.62 -52.93 -0.03 -1.42 16 10 C -0.14 -2.56 8.37 71.98 0.60 -1.96 16 11 C -0.11 -1.51 4.64 30.59 0.14 -1.36 16 12 C -0.12 -1.83 5.70 30.59 0.17 -1.66 16 13 C -0.12 -1.72 5.92 30.60 0.18 -1.53 16 14 C -0.13 -2.53 5.63 30.60 0.17 -2.36 16 15 C -0.09 -1.66 4.37 30.60 0.13 -1.53 16 16 N -0.68 -19.90 5.84 -495.59 -2.89 -22.79 16 17 C 0.06 2.03 5.93 85.56 0.51 2.54 16 18 C 0.44 20.05 7.83 87.66 0.69 20.74 16 19 O -0.62 -33.67 15.89 -3.07 -0.05 -33.72 16 20 N -0.57 -28.45 5.29 -306.99 -1.62 -30.08 16 21 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 25 Si 0.99 42.34 29.55 68.60 2.03 44.36 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.06 0.90 6.99 -2.39 -0.02 0.89 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.42 7.41 -2.39 -0.02 1.41 16 34 H 0.08 1.71 6.97 -2.39 -0.02 1.70 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.40 7.69 6.24 -92.71 -0.58 7.11 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.11 7.56 -2.39 -0.02 1.10 16 40 H 0.07 0.96 7.56 -2.39 -0.02 0.94 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.04 0.80 7.22 -2.39 -0.02 0.78 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 1.58 5.51 -2.39 -0.01 1.57 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 50 H 0.34 10.38 6.61 -89.69 -0.59 9.79 16 51 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 52 H 0.10 3.00 7.38 -2.39 -0.02 2.98 16 53 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 54 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -69.12 415.52 0.17 -68.95 By element: Atomic # 1 Polarization: 49.86 SS G_CDS: -1.00 Total: 48.86 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.67 Total: 7.90 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -6.44 Total: -118.95 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.12 0.17 -68.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269460786.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.245 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds