Wall clock time and date at job start Tue Mar 31 2020 23:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99556 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00138 * 180.02562 * 7 6 5 10 10 H 1.08994 * 109.47091 * 299.99797 * 9 7 6 11 11 C 1.52999 * 109.46980 * 59.99622 * 9 7 6 12 12 C 1.53001 * 109.46794 * 179.97438 * 9 7 6 13 13 C 1.54269 * 110.02939 * 177.91153 * 12 9 7 14 14 C 1.54965 * 104.15648 * 217.13549 * 13 12 9 15 15 C 1.54887 * 102.77911 * 37.88426 * 14 13 12 16 16 C 1.53867 * 110.03639 * 60.68750 * 12 9 7 17 17 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 18 18 C 1.46901 * 110.99814 * 300.92314 * 17 3 2 19 19 C 1.50692 * 109.47239 * 185.67747 * 18 17 3 20 20 O 1.21297 * 120.00053 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00418 * 179.72333 * 19 18 17 22 22 C 1.37095 * 120.00548 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99663 * 0.02562 * 22 21 19 24 24 C 1.38954 * 120.00244 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46838 * 60.00518 * 26 24 22 28 28 H 1.48502 * 109.47196 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47366 * 300.00596 * 26 24 22 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 33 33 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 34 34 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 35 35 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 36 36 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 37 37 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 38 38 H 1.09004 * 109.47032 * 60.00217 * 11 9 7 39 39 H 1.09004 * 109.46866 * 180.02562 * 11 9 7 40 40 H 1.08996 * 109.47392 * 299.99842 * 11 9 7 41 41 H 1.09006 * 110.01441 * 299.29163 * 12 9 7 42 42 H 1.09001 * 110.48199 * 335.77779 * 13 12 9 43 43 H 1.08996 * 110.49029 * 98.42724 * 13 12 9 44 44 H 1.08999 * 110.72116 * 279.57005 * 14 13 12 45 45 H 1.08997 * 110.92375 * 156.29395 * 14 13 12 46 46 H 1.09003 * 110.48786 * 203.40741 * 15 14 13 47 47 H 1.08996 * 110.60137 * 80.81788 * 15 14 13 48 48 H 1.09002 * 110.03577 * 238.57104 * 16 12 9 49 49 H 1.09004 * 110.03380 * 0.02562 * 16 12 9 50 50 H 1.00897 * 110.99887 * 64.87330 * 17 3 2 51 51 H 1.09003 * 109.46892 * 65.67283 * 18 17 3 52 52 H 1.09004 * 109.47007 * 305.68019 * 18 17 3 53 53 H 0.97007 * 119.99235 * 0.02562 * 21 19 18 54 54 H 0.97002 * 119.99685 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1618 2.1487 0.2825 9 6 5.8985 4.4746 -0.0188 10 1 5.6194 4.8795 -0.9915 11 6 5.2874 5.3373 1.0871 12 6 7.4225 4.4766 0.1167 13 6 7.9667 5.9094 -0.0591 14 6 9.2959 5.7177 -0.8323 15 6 8.9572 4.5711 -1.8170 16 6 8.0522 3.6259 -1.0001 17 7 1.6596 2.0963 -1.2593 18 6 2.2180 1.3802 -2.4140 19 6 1.9261 2.1536 -3.6739 20 8 1.3135 3.1989 -3.6157 21 7 2.3508 1.6871 -4.8648 22 6 2.0848 2.3904 -6.0111 23 1 1.5351 3.3186 -5.9598 24 6 2.5232 1.9096 -7.2389 25 7 3.1925 0.7804 -7.3012 26 14 2.1613 2.8683 -8.8006 27 1 2.7722 4.2185 -8.7053 28 1 2.7316 2.1478 -9.9672 29 1 0.6921 3.0006 -8.9711 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 -0.3633 0.4961 0.8999 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8428 1.0402 1.1087 36 1 3.9997 0.8294 -0.6518 37 1 3.4419 3.5480 -0.1267 38 1 5.5666 4.9324 2.0599 39 1 5.6583 6.3585 0.9981 40 1 4.2017 5.3359 0.9910 41 1 7.7108 4.0849 1.0922 42 1 7.2705 6.5131 -0.6413 43 1 8.1521 6.3689 0.9117 44 1 10.0968 5.4212 -0.1550 45 1 9.5657 6.6246 -1.3735 46 1 9.8654 4.0550 -2.1285 47 1 8.4218 4.9564 -2.6847 48 1 8.6468 2.8217 -0.5667 49 1 7.2721 3.2119 -1.6390 50 1 0.6569 2.1788 -1.3353 51 1 1.7652 0.3910 -2.4816 52 1 3.2964 1.2785 -2.2916 53 1 2.8442 0.8531 -4.9109 54 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269492347.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:54 Heat of formation + Delta-G solvation = -126.164997 kcal Electronic energy + Delta-G solvation = -30869.647415 eV Core-core repulsion = 26838.932893 eV Total energy + Delta-G solvation = -4030.714521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.27689 -40.32627 -39.09511 -38.31816 -35.95749 -35.16716 -34.11527 -33.31452 -32.79247 -29.84358 -29.62574 -28.47941 -27.99598 -26.11788 -25.21059 -23.74074 -21.76911 -21.47713 -21.28120 -20.73419 -20.20136 -19.83018 -18.32272 -17.95813 -17.14515 -17.11727 -16.56717 -16.46098 -16.09074 -15.91734 -15.83359 -15.68739 -15.28312 -14.96657 -14.75184 -14.38814 -14.23349 -14.09955 -13.99401 -13.77594 -13.52976 -13.39467 -13.15147 -13.09784 -12.89304 -12.73083 -12.45719 -12.43492 -12.30851 -12.13969 -11.98952 -11.88351 -11.85946 -11.82024 -11.68772 -11.55804 -11.49078 -11.45330 -11.26596 -10.61228 -10.34611 -10.01639 -9.94712 -9.34464 -8.46617 -5.95624 1.39084 1.40662 1.51758 1.73765 2.05505 2.26865 2.32286 2.94012 3.20572 3.51940 3.59848 3.70803 3.73321 3.76751 3.97540 4.06892 4.15506 4.21448 4.26364 4.27437 4.34629 4.45595 4.47542 4.53020 4.57677 4.59378 4.71671 4.73319 4.78001 4.79112 4.83947 4.85188 4.92694 4.94565 5.00083 5.10349 5.10664 5.16662 5.24455 5.25266 5.29583 5.36619 5.40014 5.42929 5.47965 5.52314 5.58311 5.87344 6.07794 6.40289 6.59152 6.67587 7.12215 7.35002 7.56051 8.10764 8.70687 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003579 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.918065 B = 7822.324491 C =10723.743872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.126 3.874 6 N -0.709 5.709 7 C 0.509 3.491 8 O -0.582 6.582 9 C -0.104 4.104 10 H 0.093 0.907 11 C -0.137 4.137 12 C -0.066 4.066 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.109 4.109 17 N -0.663 5.663 18 C 0.064 3.936 19 C 0.441 3.559 20 O -0.616 6.616 21 N -0.576 5.576 22 C -0.333 4.333 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.414 0.586 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.033 0.967 50 H 0.352 0.648 51 H 0.065 0.935 52 H 0.088 0.912 53 H 0.393 0.607 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 4.613 19.029 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.026 4.026 4 H 0.131 0.869 5 C 0.002 3.998 6 N -0.361 5.361 7 C 0.296 3.704 8 O -0.462 6.462 9 C -0.125 4.125 10 H 0.111 0.889 11 C -0.194 4.194 12 C -0.085 4.085 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.169 4.169 16 C -0.147 4.147 17 N -0.296 5.296 18 C -0.069 4.069 19 C 0.229 3.771 20 O -0.502 6.502 21 N -0.213 5.213 22 C -0.462 4.462 23 H 0.099 0.901 24 C -0.213 4.213 25 N -0.564 5.564 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.052 0.948 50 H 0.172 0.828 51 H 0.082 0.918 52 H 0.106 0.894 53 H 0.226 0.774 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.502 5.007 19.058 20.458 hybrid contribution -0.721 -1.099 -1.399 1.920 sum 4.781 3.909 17.658 18.707 Atomic orbital electron populations 1.21742 0.94697 1.02340 1.01997 1.22174 0.97134 0.97017 1.03306 1.21954 0.93530 0.94420 0.92657 0.86932 1.21409 0.93479 0.83618 1.01327 1.45878 1.07350 1.10290 1.72538 1.21134 0.82161 0.91940 0.75147 1.90654 1.56789 1.47798 1.50962 1.21494 0.96876 0.91715 1.02399 0.88934 1.21772 1.01043 1.00038 0.96568 1.21538 0.91828 0.96336 0.98818 1.22469 0.96725 0.94745 1.01184 1.22492 0.97572 0.98049 0.97634 1.22440 0.99108 0.97054 0.98260 1.22054 0.98108 0.97758 0.96765 1.60156 1.17931 1.51690 0.99813 1.21495 1.01250 0.95281 0.88851 1.20812 0.83412 0.87536 0.85390 1.90482 1.46175 1.26357 1.87199 1.41957 1.50373 1.23420 1.05560 1.19643 1.35057 1.06403 0.85146 0.90075 1.26047 0.96038 0.97268 1.01956 1.69681 1.37848 1.20932 1.27908 0.85002 0.78743 0.78026 0.76672 1.19669 1.19674 1.19465 0.94003 0.91940 0.91060 0.92422 0.89513 0.90440 0.93627 0.74964 0.92108 0.89644 0.91428 0.91322 0.90908 0.89827 0.91024 0.90468 0.91725 0.92376 0.93102 0.94827 0.82752 0.91761 0.89432 0.77397 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.71 71.98 0.70 -1.83 16 2 C -0.16 -2.80 5.17 30.60 0.16 -2.64 16 3 C 0.08 1.68 2.70 44.91 0.12 1.80 16 4 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.13 2.95 4.70 86.38 0.41 3.36 16 6 N -0.71 -17.55 5.28 -463.07 -2.45 -19.99 16 7 C 0.51 14.17 6.55 87.66 0.57 14.75 16 8 O -0.58 -20.13 14.72 -3.04 -0.04 -20.18 16 9 C -0.10 -2.30 2.01 -11.54 -0.02 -2.32 16 10 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 11 C -0.14 -2.16 8.88 71.98 0.64 -1.52 16 12 C -0.07 -1.46 2.12 -10.07 -0.02 -1.48 16 13 C -0.11 -1.89 5.31 31.70 0.17 -1.72 16 14 C -0.12 -2.05 6.91 31.91 0.22 -1.83 16 15 C -0.13 -2.90 6.83 31.67 0.22 -2.69 16 16 C -0.11 -2.91 5.10 31.32 0.16 -2.75 16 17 N -0.66 -18.26 5.36 -495.58 -2.65 -20.92 16 18 C 0.06 2.16 5.34 85.55 0.46 2.61 16 19 C 0.44 20.72 7.83 87.65 0.69 21.41 16 20 O -0.62 -32.97 15.90 -3.08 -0.05 -33.02 16 21 N -0.58 -29.87 5.29 -306.99 -1.62 -31.49 16 22 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 23 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -50.71 13.05 21.66 0.28 -50.43 16 26 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 30 H 0.04 0.84 6.85 -2.38 -0.02 0.82 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.20 6.23 -2.39 -0.01 1.19 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.28 6.57 -2.38 -0.02 1.26 16 37 H 0.41 9.61 7.56 -92.70 -0.70 8.91 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 1.07 7.22 -2.38 -0.02 1.06 16 40 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16 41 H 0.07 1.60 8.12 -2.38 -0.02 1.58 16 42 H 0.07 1.17 7.72 -2.39 -0.02 1.15 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.03 1.07 6.96 -2.38 -0.02 1.05 16 50 H 0.35 9.94 7.23 -89.70 -0.65 9.29 16 51 H 0.06 1.98 6.49 -2.39 -0.02 1.96 16 52 H 0.09 3.00 6.15 -2.38 -0.01 2.98 16 53 H 0.39 19.79 7.90 -92.70 -0.73 19.06 16 54 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.61 418.66 0.07 -69.54 By element: Atomic # 1 Polarization: 55.73 SS G_CDS: -1.17 Total: 54.56 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.74 Total: 6.72 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.44 Total: -122.84 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.09 Total: -53.20 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.61 0.07 -69.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492347.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.622 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds