Wall clock time and date at job start Wed Apr 1 2020 00:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46951 * 2 1 4 4 N 1.46901 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.48671 * 111.11118 * 285.42018 * 4 3 2 6 6 C 1.54382 * 104.67206 * 201.09367 * 5 4 3 7 7 C 1.54258 * 105.06183 * 23.77258 * 6 5 4 8 8 C 1.48560 * 111.00520 * 169.99854 * 4 3 2 9 9 H 1.08998 * 110.41042 * 40.14246 * 8 4 3 10 10 C 1.50702 * 110.40886 * 277.82588 * 8 4 3 11 11 O 1.21281 * 120.00222 * 346.35417 * 10 8 4 12 12 N 1.34785 * 119.99759 * 166.35655 * 10 8 4 13 13 C 1.46922 * 120.62901 * 174.70342 * 12 10 8 14 14 C 1.53192 * 108.77810 * 126.66424 * 13 12 10 15 15 C 1.53035 * 109.31319 * 54.62957 * 14 13 12 16 16 O 1.42913 * 109.45697 * 58.65820 * 15 14 13 17 17 C 1.52995 * 109.46221 * 178.61418 * 15 14 13 18 18 N 1.46500 * 109.47438 * 305.07054 * 17 15 14 19 19 C 1.36937 * 120.00143 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00219 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99672 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99724 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00103 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47122 * 90.00107 * 23 21 19 25 25 H 1.48498 * 109.46627 * 210.00136 * 23 21 19 26 26 H 1.48496 * 109.46937 * 329.99753 * 23 21 19 27 27 C 1.53040 * 109.54230 * 298.64213 * 15 14 13 28 28 C 1.46921 * 120.63095 * 354.97939 * 12 10 8 29 29 H 1.09003 * 109.47602 * 300.00368 * 1 2 3 30 30 H 1.09001 * 109.47046 * 59.99892 * 1 2 3 31 31 H 1.08997 * 109.47513 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47199 * 239.99844 * 2 1 3 33 33 H 1.08999 * 109.46771 * 119.99382 * 2 1 3 34 34 H 1.09005 * 109.47579 * 60.00134 * 3 2 1 35 35 H 1.08996 * 109.47359 * 299.99449 * 3 2 1 36 36 H 1.08997 * 110.44114 * 82.25758 * 5 4 3 37 37 H 1.08994 * 110.40653 * 319.91073 * 5 4 3 38 38 H 1.08996 * 110.32431 * 264.87697 * 6 5 4 39 39 H 1.08998 * 110.32009 * 142.66514 * 6 5 4 40 40 H 1.09003 * 110.32743 * 241.10619 * 7 6 5 41 41 H 1.08997 * 110.32886 * 118.89140 * 7 6 5 42 42 H 1.09004 * 109.58375 * 246.45047 * 13 12 10 43 43 H 1.09000 * 109.58686 * 6.87155 * 13 12 10 44 44 H 1.08999 * 109.49298 * 294.68169 * 14 13 12 45 45 H 1.09003 * 109.50015 * 174.58245 * 14 13 12 46 46 H 0.96694 * 113.99951 * 59.93313 * 16 15 14 47 47 H 1.08999 * 109.47355 * 65.07161 * 17 15 14 48 48 H 1.09005 * 109.47589 * 185.07335 * 17 15 14 49 49 H 0.97006 * 119.99790 * 359.97438 * 18 17 15 50 50 H 0.97003 * 119.99798 * 180.02562 * 22 21 19 51 51 H 1.09007 * 109.49323 * 301.41031 * 27 15 14 52 52 H 1.08997 * 109.49724 * 181.31783 * 27 15 14 53 53 H 1.09003 * 109.58757 * 353.11877 * 28 12 10 54 54 H 1.09001 * 109.58914 * 113.54944 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0439 1.0740 1.3379 6 6 5.4846 1.6286 1.3492 7 6 5.4830 2.7696 0.3110 8 6 4.0415 2.8083 -0.2402 9 1 3.4485 3.5479 0.2977 10 6 4.0510 3.1161 -1.7154 11 8 3.8959 2.2238 -2.5221 12 7 4.2318 4.3831 -2.1383 13 6 4.3592 4.6830 -3.5710 14 6 3.3399 5.7651 -3.9408 15 6 3.5329 6.9763 -3.0254 16 8 4.8663 7.4710 -3.1653 17 6 2.5393 8.0727 -3.4144 18 7 2.6891 8.3849 -4.8379 19 6 1.8991 9.3426 -5.4157 20 1 1.1658 9.8680 -4.8220 21 6 2.0407 9.6379 -6.7647 22 7 1.2817 10.5587 -7.3200 23 14 3.3085 8.7285 -7.7919 24 1 2.6905 7.5120 -8.3778 25 1 3.7891 9.6141 -8.8827 26 1 4.4537 8.3367 -6.9316 27 6 3.2925 6.5627 -1.5717 28 6 4.3113 5.4896 -1.1751 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.0526 -0.0092 1.4591 37 1 3.4513 1.5391 2.1256 38 1 6.1915 0.8521 1.0572 39 1 5.7333 2.0161 2.3371 40 1 6.1891 2.5531 -0.4906 41 1 5.7309 3.7171 0.7894 42 1 5.3665 5.0429 -3.7807 43 1 4.1625 3.7819 -4.1519 44 1 2.3309 5.3721 -3.8162 45 1 3.4884 6.0657 -4.9780 46 1 5.0893 7.7523 -4.0631 47 1 1.5234 7.7271 -3.2232 48 1 2.7359 8.9675 -2.8237 49 1 3.3480 7.9132 -5.3712 50 1 1.3804 10.7648 -8.2627 51 1 2.2838 6.1622 -1.4695 52 1 3.4072 7.4309 -0.9227 53 1 4.0828 5.1208 -0.1751 54 1 5.3146 5.9153 -1.1895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274520720.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:15 Heat of formation + Delta-G solvation = -89.961129 kcal Electronic energy + Delta-G solvation = -31529.653106 eV Core-core repulsion = 27500.508503 eV Total energy + Delta-G solvation = -4029.144604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73439 -40.32162 -38.91324 -36.87617 -35.88915 -35.48686 -33.67554 -32.59039 -32.41463 -31.76568 -30.22473 -28.45401 -26.49410 -25.43911 -24.87522 -23.46648 -22.95433 -22.54271 -21.39783 -21.26615 -20.03559 -19.91637 -18.46395 -17.31394 -17.28947 -16.97745 -16.71686 -16.23401 -16.10355 -16.01179 -15.77181 -15.56636 -14.99854 -14.85654 -14.76468 -14.61634 -14.42834 -14.24535 -14.06797 -13.85402 -13.67550 -13.52945 -13.43494 -13.12699 -12.86856 -12.77703 -12.75195 -12.55185 -12.33114 -12.27079 -12.20397 -12.14831 -12.13034 -11.90381 -11.84342 -11.59096 -11.49064 -11.41346 -11.04546 -10.83008 -10.69752 -9.64409 -9.42322 -9.36482 -8.06246 -5.41156 1.33158 1.39208 1.45680 1.59865 1.88454 2.44637 2.94725 3.18152 3.29882 3.36509 3.46925 3.59687 3.68284 3.79925 3.84153 3.89552 3.94113 4.08961 4.11500 4.15821 4.25348 4.29675 4.41906 4.44237 4.52782 4.54390 4.55661 4.65946 4.70174 4.71749 4.75299 4.78373 4.85085 4.89046 4.90420 4.94008 5.01218 5.03286 5.09325 5.12425 5.15756 5.21896 5.29237 5.30469 5.36254 5.50468 5.71256 5.81059 6.03713 6.16056 6.43756 6.67481 7.02812 7.20574 7.75974 7.94811 9.15145 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.002650 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.618475 B =10563.287317 C =11157.425134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.050 3.950 4 N -0.514 5.514 5 C 0.033 3.967 6 C -0.118 4.118 7 C -0.108 4.108 8 C 0.046 3.954 9 H 0.094 0.906 10 C 0.518 3.482 11 O -0.570 6.570 12 N -0.607 5.607 13 C 0.123 3.877 14 C -0.152 4.152 15 C 0.137 3.863 16 O -0.556 6.556 17 C 0.130 3.870 18 N -0.752 5.752 19 C -0.236 4.236 20 H 0.055 0.945 21 C -0.063 4.063 22 N -0.983 5.983 23 Si 0.952 3.048 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.241 1.241 27 C -0.116 4.116 28 C 0.116 3.884 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.380 0.620 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.083 0.917 52 H 0.100 0.900 53 H 0.111 0.889 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 -20.070 23.804 32.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.078 4.078 4 N -0.239 5.239 5 C -0.094 4.094 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.065 4.065 9 H 0.112 0.888 10 C 0.306 3.694 11 O -0.448 6.448 12 N -0.341 5.341 13 C 0.001 3.999 14 C -0.190 4.190 15 C 0.096 3.904 16 O -0.363 6.363 17 C 0.004 3.996 18 N -0.400 5.400 19 C -0.367 4.367 20 H 0.073 0.927 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.778 3.222 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.165 1.165 27 C -0.155 4.155 28 C -0.006 4.006 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.229 0.771 47 H 0.048 0.952 48 H 0.051 0.949 49 H 0.200 0.800 50 H 0.067 0.933 51 H 0.101 0.899 52 H 0.119 0.881 53 H 0.129 0.871 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.781 -20.907 23.618 32.742 hybrid contribution -0.321 0.802 -1.763 1.963 sum 8.460 -20.105 21.855 30.878 Atomic orbital electron populations 1.21725 0.94799 1.02334 1.01821 1.21374 0.95946 0.95408 1.02106 1.22278 0.87085 0.98258 1.00212 1.65040 1.08539 1.21205 1.29109 1.23254 0.95674 1.01906 0.88605 1.22307 0.96139 0.97401 0.99720 1.22272 0.92244 1.01365 0.98802 1.22683 0.99674 0.92843 0.91344 0.88827 1.20921 0.75226 0.81564 0.91649 1.90667 1.50234 1.46721 1.57179 1.48196 1.71633 1.06815 1.07435 1.21373 0.99246 0.97751 0.81569 1.22455 1.00180 0.96218 1.00177 1.21275 0.82173 0.90529 0.96423 1.86396 1.29419 1.84877 1.35589 1.21481 0.97511 0.96470 0.84149 1.42623 1.44427 1.45829 1.07082 1.18986 1.12715 1.11955 0.93056 0.92729 1.25535 1.01801 1.00015 0.98077 1.69884 1.44249 1.36831 1.12377 0.85467 0.80048 0.77869 0.78766 1.20769 1.22283 1.16540 1.21890 1.00288 1.00045 0.93228 1.21872 1.00512 0.85808 0.92388 0.91760 0.93700 0.91692 0.93238 0.90897 0.92935 0.93474 0.89580 0.92052 0.91138 0.88368 0.92370 0.87703 0.90235 0.90965 0.91537 0.91319 0.77117 0.95212 0.94939 0.79992 0.93279 0.89879 0.88138 0.87118 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.42 16 2 C -0.11 -1.85 6.05 30.59 0.19 -1.67 16 3 C 0.05 0.92 4.78 86.30 0.41 1.33 16 4 N -0.51 -9.83 4.59 -860.73 -3.95 -13.78 16 5 C 0.03 0.40 5.92 86.43 0.51 0.91 16 6 C -0.12 -1.17 7.00 31.49 0.22 -0.95 16 7 C -0.11 -1.38 6.30 31.49 0.20 -1.19 16 8 C 0.05 0.80 1.69 44.32 0.07 0.88 16 9 H 0.09 1.24 6.45 -2.39 -0.02 1.22 16 10 C 0.52 13.11 6.48 87.66 0.57 13.68 16 11 O -0.57 -19.83 15.97 -3.03 -0.05 -19.87 16 12 N -0.61 -13.68 2.97 -818.90 -2.43 -16.12 16 13 C 0.12 3.19 6.20 86.36 0.54 3.73 16 14 C -0.15 -4.25 4.88 30.67 0.15 -4.10 16 15 C 0.14 3.70 0.71 -10.77 -0.01 3.69 16 16 O -0.56 -14.83 11.70 -148.98 -1.74 -16.58 16 17 C 0.13 4.67 5.43 86.38 0.47 5.13 16 18 N -0.75 -33.29 4.87 -343.45 -1.67 -34.97 16 19 C -0.24 -13.26 10.48 84.04 0.88 -12.38 16 20 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 21 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 22 N -0.98 -62.78 13.97 21.65 0.30 -62.48 16 23 Si 0.95 44.21 27.74 68.60 1.90 46.12 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.24 -9.60 6.52 99.48 0.65 -8.95 16 27 C -0.12 -2.31 5.11 30.67 0.16 -2.15 16 28 C 0.12 1.91 5.95 86.36 0.51 2.43 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.01 7.48 -2.39 -0.02 0.99 16 34 H 0.05 0.76 7.77 -2.38 -0.02 0.74 16 35 H 0.05 1.11 7.78 -2.39 -0.02 1.09 16 36 H 0.09 1.02 7.86 -2.39 -0.02 1.00 16 37 H 0.06 0.56 7.75 -2.39 -0.02 0.55 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.06 0.98 7.85 -2.39 -0.02 0.96 16 41 H 0.10 0.78 8.05 -2.39 -0.02 0.76 16 42 H 0.08 1.92 7.81 -2.39 -0.02 1.90 16 43 H 0.07 2.14 7.00 -2.39 -0.02 2.12 16 44 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.09 6.53 -2.39 -0.02 2.08 16 46 H 0.38 10.06 8.19 -74.06 -0.61 9.45 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.03 1.21 8.14 -2.38 -0.02 1.20 16 49 H 0.37 15.04 3.41 -92.70 -0.32 14.73 16 50 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 51 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 52 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 53 H 0.11 1.15 5.41 -2.39 -0.01 1.14 16 54 H 0.09 1.40 7.81 -2.39 -0.02 1.38 16 Total: -1.00 -75.24 408.01 -1.69 -76.93 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.10 Total: 36.03 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.05 Total: 4.73 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -7.75 Total: -127.35 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.79 Total: -36.45 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.12 kcal Total: -75.24 -1.69 -76.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274520720.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.031 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds