Wall clock time and date at job start Tue Mar 31 2020 23:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 H 1.09002 * 109.47009 * 56.46018 * 3 2 1 5 5 N 1.46499 * 109.47515 * 296.45827 * 3 2 1 6 6 C 1.34773 * 119.99891 * 85.00044 * 5 3 2 7 7 C 1.50707 * 120.00021 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00586 * 359.97438 * 6 5 3 9 9 C 1.50695 * 109.47189 * 176.45500 * 3 2 1 10 10 O 1.21284 * 119.99974 * 93.86361 * 9 3 2 11 11 N 1.34778 * 120.00523 * 273.86463 * 9 3 2 12 12 C 1.46930 * 120.62407 * 5.03879 * 11 9 3 13 13 C 1.52770 * 109.00296 * 233.58174 * 12 11 9 14 14 C 1.53040 * 109.38321 * 305.58732 * 13 12 11 15 15 C 1.52994 * 109.44854 * 181.25876 * 14 13 12 16 16 N 1.46498 * 109.47759 * 67.25258 * 15 14 13 17 17 C 1.36934 * 120.00209 * 263.98462 * 16 15 14 18 18 H 1.08000 * 119.99989 * 13.08115 * 17 16 15 19 19 C 1.38814 * 120.00112 * 193.09409 * 17 16 15 20 20 N 1.31621 * 119.99953 * 17.34465 * 19 17 16 21 21 Si 1.86800 * 120.00087 * 197.35316 * 19 17 16 22 22 H 1.48498 * 109.47081 * 59.99308 * 21 19 17 23 23 H 1.48500 * 109.47222 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46750 * 299.99624 * 21 19 17 25 25 C 1.46505 * 119.99898 * 83.97732 * 16 15 14 26 26 C 1.52991 * 109.47059 * 83.62152 * 25 16 15 27 27 C 1.53037 * 109.53779 * 61.23826 * 14 13 12 28 28 C 1.46924 * 120.63531 * 185.31267 * 11 9 3 29 29 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46902 * 299.99402 * 1 2 3 31 31 H 1.08996 * 109.47385 * 59.99200 * 1 2 3 32 32 H 1.08990 * 109.47355 * 120.00354 * 2 1 3 33 33 H 1.09000 * 109.46850 * 240.01084 * 2 1 3 34 34 H 0.97000 * 119.99525 * 264.99936 * 5 3 2 35 35 H 1.08998 * 109.46802 * 89.99320 * 7 6 5 36 36 H 1.08990 * 109.47165 * 209.99979 * 7 6 5 37 37 H 1.09005 * 109.46879 * 330.00081 * 7 6 5 38 38 H 1.08994 * 109.59011 * 353.41161 * 12 11 9 39 39 H 1.08998 * 109.58761 * 113.84482 * 12 11 9 40 40 H 1.08997 * 109.56253 * 185.55276 * 13 12 11 41 41 H 1.08996 * 109.36063 * 65.49998 * 13 12 11 42 42 H 1.09009 * 109.46054 * 301.21933 * 14 13 12 43 43 H 1.09001 * 109.47402 * 187.25652 * 15 14 13 44 44 H 1.09000 * 109.47156 * 307.25169 * 15 14 13 45 45 H 0.97000 * 119.99974 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.47426 * 203.62597 * 25 16 15 47 47 H 1.09001 * 109.47010 * 323.62300 * 25 16 15 48 48 H 1.09002 * 109.47685 * 300.13624 * 26 25 16 49 49 H 1.08999 * 109.47070 * 60.13634 * 26 25 16 50 50 H 1.09004 * 109.47113 * 180.13589 * 26 25 16 51 51 H 1.09004 * 109.49644 * 178.67944 * 27 14 13 52 52 H 1.09001 * 109.49574 * 58.59237 * 27 14 13 53 53 H 1.09005 * 109.58490 * 246.15816 * 28 11 9 54 54 H 1.09000 * 109.58609 * 6.43936 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6257 1.9743 0.8566 5 7 1.6226 2.1081 -1.2365 6 6 0.4029 2.6758 -1.3176 7 6 -0.0267 3.3601 -2.5898 8 8 -0.3493 2.6353 -0.3671 9 6 3.5444 1.4435 0.0878 10 8 4.2109 1.4931 -0.9242 11 7 4.1493 1.3893 1.2910 12 6 3.3601 1.2181 2.5185 13 6 3.7177 2.3333 3.4994 14 6 5.2317 2.3478 3.7220 15 6 5.5882 3.4438 4.7282 16 7 5.0533 3.0903 6.0455 17 6 3.8458 3.5926 6.4515 18 1 3.1918 4.0701 5.7369 19 6 3.4625 3.4883 7.7815 20 7 4.3618 3.2302 8.7073 21 14 1.6703 3.7139 8.2575 22 1 0.8420 2.6948 7.5643 23 1 1.5244 3.5540 9.7267 24 1 1.2198 5.0719 7.8598 25 6 5.8102 2.1993 6.9284 26 6 6.8535 3.0107 7.6990 27 6 5.9416 2.6237 2.3946 28 6 5.6097 1.5063 1.4007 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 2.2241 2.1402 -1.9968 35 1 -0.5197 2.6388 -3.2415 36 1 -0.7189 4.1676 -2.3520 37 1 0.8481 3.7685 -3.0959 38 1 2.2978 1.2697 2.2802 39 1 3.5892 0.2521 2.9685 40 1 3.2120 2.1599 4.4493 41 1 3.4013 3.2917 3.0879 42 1 5.5510 1.3806 4.1104 43 1 6.6721 3.5414 4.7905 44 1 5.1564 4.3902 4.4028 45 1 4.0939 3.1569 9.6367 46 1 5.1293 1.7210 7.6324 47 1 6.3110 1.4365 6.3321 48 1 7.5331 3.4909 6.9949 49 1 6.3526 3.7719 8.2971 50 1 7.4183 2.3473 8.3541 51 1 7.0187 2.6572 2.5582 52 1 5.6043 3.5794 1.9935 53 1 6.0260 0.5642 1.7576 54 1 6.0315 1.7455 0.4245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274955989.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:04 Heat of formation + Delta-G solvation = -71.909401 kcal Electronic energy + Delta-G solvation = -31600.337484 eV Core-core repulsion = 27571.975662 eV Total energy + Delta-G solvation = -4028.361822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.85873 -40.48967 -39.10838 -37.46893 -36.48278 -34.69747 -33.62785 -32.72505 -32.14190 -30.88761 -30.62150 -28.76605 -27.54339 -25.54800 -24.21428 -24.14337 -23.06925 -22.20019 -21.55880 -21.04901 -20.11780 -18.64455 -18.52888 -17.88328 -17.23405 -16.97773 -16.90989 -16.32816 -16.05998 -15.69915 -15.50022 -15.10280 -15.02701 -14.88639 -14.80086 -14.50864 -14.39011 -14.09463 -13.77909 -13.53195 -13.44751 -13.35617 -13.18217 -13.04607 -12.93000 -12.88034 -12.64185 -12.54966 -12.51244 -12.39500 -12.15808 -11.97108 -11.93929 -11.88253 -11.68825 -11.40133 -11.19430 -11.13827 -10.95040 -10.83990 -10.31205 -10.16866 -9.73158 -8.65626 -7.69058 -5.07696 1.31208 1.50244 1.53211 1.57603 1.62827 1.75437 2.34882 2.58295 3.22206 3.38126 3.69378 3.75240 3.82451 3.92704 3.97439 4.00751 4.12416 4.18475 4.29411 4.38542 4.44449 4.47711 4.53125 4.58944 4.65665 4.75160 4.76583 4.78587 4.85796 4.87988 4.96037 5.01479 5.02836 5.05728 5.09284 5.10609 5.13772 5.19535 5.27631 5.30265 5.36046 5.39464 5.41686 5.61492 5.63755 5.69451 5.89433 6.23819 6.26054 6.46571 6.50045 6.92705 7.21180 7.31601 8.03068 8.43375 9.30316 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003158 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.810697 B = 8865.355427 C =10287.909644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.126 3.874 4 H 0.099 0.901 5 N -0.710 5.710 6 C 0.506 3.494 7 C -0.165 4.165 8 O -0.581 6.581 9 C 0.517 3.483 10 O -0.568 6.568 11 N -0.598 5.598 12 C 0.108 3.892 13 C -0.117 4.117 14 C -0.093 4.093 15 C 0.155 3.845 16 N -0.608 5.608 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.923 5.923 21 Si 0.950 3.050 22 H -0.282 1.282 23 H -0.299 1.299 24 H -0.287 1.287 25 C 0.174 3.826 26 C -0.136 4.136 27 C -0.117 4.117 28 C 0.116 3.884 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.242 0.758 46 H 0.059 0.941 47 H 0.020 0.980 48 H 0.017 0.983 49 H 0.058 0.942 50 H 0.031 0.969 51 H 0.088 0.912 52 H 0.056 0.944 53 H 0.081 0.919 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -5.972 -21.960 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.017 3.983 4 H 0.117 0.883 5 N -0.365 5.365 6 C 0.296 3.704 7 C -0.224 4.224 8 O -0.461 6.461 9 C 0.304 3.696 10 O -0.447 6.447 11 N -0.330 5.330 12 C -0.014 4.014 13 C -0.155 4.155 14 C -0.114 4.114 15 C 0.029 3.971 16 N -0.330 5.330 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.572 5.572 21 Si 0.780 3.220 22 H -0.209 1.209 23 H -0.226 1.226 24 H -0.213 1.213 25 C 0.049 3.951 26 C -0.196 4.196 27 C -0.156 4.156 28 C -0.006 4.006 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.076 0.924 50 H 0.050 0.950 51 H 0.106 0.894 52 H 0.074 0.926 53 H 0.099 0.901 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.477 -5.971 -21.642 22.587 hybrid contribution -0.543 0.458 0.726 1.016 sum -3.020 -5.512 -20.916 21.840 Atomic orbital electron populations 1.21716 0.94083 1.01523 1.02014 1.21842 0.97370 0.92988 1.03857 1.20890 0.90356 0.96680 0.90369 0.88306 1.45917 1.17667 1.57035 1.15850 1.21544 0.80435 0.77343 0.91122 1.21906 1.04543 1.02283 0.93650 1.90744 1.53620 1.60746 1.40989 1.20681 0.90265 0.75517 0.83104 1.90644 1.66792 1.51994 1.35311 1.48176 1.08339 1.70424 1.06080 1.21888 0.95865 0.99754 0.83924 1.21712 0.97100 0.97685 0.99004 1.21581 0.94818 1.00211 0.94821 1.20857 0.96105 0.95283 0.84839 1.44254 1.20614 1.53852 1.14308 1.19422 0.93720 1.31451 0.92139 0.91250 1.25341 1.00123 1.03419 0.95986 1.70266 1.31312 1.56022 0.99585 0.85595 0.82492 0.77666 0.76201 1.20873 1.22606 1.21334 1.20583 0.92664 0.90542 0.91346 1.22170 0.97533 1.01002 0.98878 1.21849 1.01368 0.98118 0.94269 1.21670 0.78869 0.99524 1.00516 0.91582 0.93438 0.93278 0.89646 0.90496 0.74633 0.86856 0.88698 0.88003 0.89040 0.89651 0.90973 0.93505 0.91837 0.94305 0.94616 0.94798 0.92316 0.96198 0.96361 0.92353 0.95026 0.89361 0.92564 0.90093 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.49 71.98 0.61 -2.10 16 2 C -0.12 -2.26 5.42 30.60 0.17 -2.09 16 3 C 0.13 2.72 1.81 44.24 0.08 2.80 16 4 H 0.10 2.46 5.85 -2.39 -0.01 2.45 16 5 N -0.71 -13.54 4.99 -446.10 -2.23 -15.76 16 6 C 0.51 10.13 6.44 87.66 0.56 10.69 16 7 C -0.16 -1.76 10.30 71.24 0.73 -1.03 16 8 O -0.58 -16.50 14.23 -3.03 -0.04 -16.54 16 9 C 0.52 12.46 6.89 87.66 0.60 13.07 16 10 O -0.57 -15.85 15.46 -3.04 -0.05 -15.90 16 11 N -0.60 -13.95 2.98 -819.73 -2.44 -16.40 16 12 C 0.11 2.54 5.87 86.22 0.51 3.04 16 13 C -0.12 -3.52 5.01 30.53 0.15 -3.37 16 14 C -0.09 -2.77 2.34 -10.77 -0.03 -2.80 16 15 C 0.16 5.79 5.13 86.38 0.44 6.23 16 16 N -0.61 -27.98 2.35 -702.02 -1.65 -29.63 16 17 C -0.24 -12.14 8.19 84.03 0.69 -11.45 16 18 H 0.07 3.51 7.75 -2.91 -0.02 3.48 16 19 C -0.05 -2.91 5.04 84.86 0.43 -2.48 16 20 N -0.92 -51.29 8.23 21.65 0.18 -51.11 16 21 Si 0.95 44.17 29.59 68.60 2.03 46.20 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 C 0.17 8.01 5.61 86.38 0.48 8.50 16 26 C -0.14 -6.17 9.70 71.98 0.70 -5.47 16 27 C -0.12 -2.79 5.36 30.67 0.16 -2.63 16 28 C 0.12 2.56 6.42 86.36 0.55 3.12 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.12 7.76 -2.38 -0.02 1.10 16 31 H 0.05 1.04 5.68 -2.39 -0.01 1.03 16 32 H 0.09 1.45 7.53 -2.39 -0.02 1.43 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 6.81 7.80 -92.71 -0.72 6.09 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.09 2.01 5.17 -2.39 -0.01 2.00 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 2.63 6.58 -2.39 -0.02 2.62 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.96 7.95 -2.38 -0.02 1.94 16 43 H 0.04 1.39 7.99 -2.39 -0.02 1.37 16 44 H 0.04 1.39 7.99 -2.39 -0.02 1.37 16 45 H 0.24 13.39 8.31 -92.71 -0.77 12.62 16 46 H 0.06 3.08 5.91 -2.39 -0.01 3.07 16 47 H 0.02 0.82 7.93 -2.39 -0.02 0.80 16 48 H 0.02 0.74 8.02 -2.39 -0.02 0.72 16 49 H 0.06 3.06 6.18 -2.39 -0.01 3.05 16 50 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 54 H 0.09 1.99 7.04 -2.39 -0.02 1.97 16 Total: -1.00 -64.70 408.15 2.81 -61.89 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.16 Total: 23.23 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.85 Total: 14.03 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -6.14 Total: -112.90 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.09 Total: -32.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.70 2.81 -61.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274955989.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.020 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds