Wall clock time and date at job start Tue Mar 31 2020 22:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47421 * 2 1 4 4 H 1.09004 * 109.46817 * 55.00041 * 3 2 1 5 5 C 1.52999 * 109.46891 * 294.99797 * 3 2 1 6 6 C 1.50693 * 109.47246 * 174.99863 * 3 2 1 7 7 O 1.21281 * 119.99947 * 21.15478 * 6 3 2 8 8 N 1.34773 * 120.00231 * 201.15942 * 6 3 2 9 9 C 1.46928 * 120.63196 * 5.47706 * 8 6 3 10 10 C 1.53192 * 108.77708 * 126.37087 * 9 8 6 11 11 C 1.53045 * 109.30892 * 54.64024 * 10 9 8 12 12 C 1.53042 * 109.53458 * 298.63220 * 11 10 9 13 13 C 1.46929 * 120.63250 * 185.46401 * 8 6 3 14 14 H 1.08996 * 109.59123 * 113.83665 * 13 8 6 15 15 C 1.52997 * 109.58396 * 353.41141 * 13 8 6 16 16 N 1.46494 * 109.47375 * 67.50611 * 15 13 8 17 17 C 1.34771 * 120.00164 * 174.39945 * 16 15 13 18 18 O 1.21289 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00109 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46928 * 180.02562 * 19 17 16 21 21 N 1.46504 * 109.47091 * 179.97438 * 20 19 17 22 22 C 1.36934 * 120.00577 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99470 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00250 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00057 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99889 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47251 * 59.99449 * 26 24 22 28 28 H 1.48506 * 109.46991 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46828 * 299.99187 * 26 24 22 30 30 H 1.08997 * 109.47055 * 300.00500 * 1 2 3 31 31 H 1.09003 * 109.46769 * 59.99443 * 1 2 3 32 32 H 1.08997 * 109.47731 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47055 * 239.99500 * 2 1 3 34 34 H 1.09001 * 109.46848 * 119.99785 * 2 1 3 35 35 H 1.09005 * 109.47014 * 58.79368 * 5 3 2 36 36 H 1.09000 * 109.47114 * 178.78951 * 5 3 2 37 37 H 1.08992 * 109.47027 * 298.79327 * 5 3 2 38 38 H 1.09010 * 109.58127 * 6.58819 * 9 8 6 39 39 H 1.08999 * 109.70417 * 246.23415 * 9 8 6 40 40 H 1.09000 * 109.49568 * 294.69279 * 10 9 8 41 41 H 1.08992 * 109.52186 * 174.60603 * 10 9 8 42 42 H 1.09000 * 109.45704 * 178.61265 * 11 10 9 43 43 H 1.09000 * 109.44774 * 58.64912 * 11 10 9 44 44 H 1.08992 * 109.50168 * 301.41568 * 12 11 10 45 45 H 1.09004 * 109.49159 * 181.31601 * 12 11 10 46 46 H 1.09010 * 109.46793 * 187.50539 * 15 13 8 47 47 H 1.09004 * 109.47489 * 307.50132 * 15 13 8 48 48 H 0.96999 * 120.00128 * 354.39945 * 16 15 13 49 49 H 1.08999 * 109.47083 * 299.99614 * 19 17 16 50 50 H 1.08996 * 109.47126 * 60.00097 * 19 17 16 51 51 H 1.08997 * 109.47589 * 299.99695 * 20 19 17 52 52 H 1.08996 * 109.47204 * 60.00064 * 20 19 17 53 53 H 0.97010 * 119.99242 * 359.97438 * 21 20 19 54 54 H 0.97002 * 119.99723 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6354 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1762 0.4548 -0.1754 8 7 4.1802 2.5453 0.5673 9 6 3.4214 3.7086 1.0467 10 6 3.9114 4.0720 2.4519 11 6 5.4274 4.2797 2.4212 12 6 6.1133 2.9809 1.9914 13 6 5.6482 2.6051 0.5809 14 1 5.9899 3.3581 -0.1293 15 6 6.2207 1.2386 0.1991 16 7 5.9109 0.9541 -1.2042 17 6 6.4137 -0.1477 -1.7953 18 8 7.1225 -0.9041 -1.1654 19 6 6.0954 -0.4401 -3.2390 20 6 6.7846 -1.7396 -3.6601 21 7 6.4747 -2.0242 -5.0634 22 6 6.9846 -3.1443 -5.6638 23 1 7.6157 -3.8178 -5.1028 24 6 6.6914 -3.4136 -6.9935 25 7 5.9228 -2.5926 -7.6772 26 14 7.3877 -4.9413 -7.8126 27 1 6.9160 -6.1494 -7.0894 28 1 6.9299 -4.9984 -9.2242 29 1 8.8714 -4.8900 -7.7758 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5501 2.1062 -1.4072 36 1 1.9801 3.1605 -1.2983 37 1 2.0875 1.6001 -2.1479 38 1 2.3599 3.4630 1.0819 39 1 3.5791 4.5524 0.3750 40 1 3.6688 3.2639 3.1420 41 1 3.4250 4.9901 2.7811 42 1 5.7752 4.5625 3.4148 43 1 5.6710 5.0710 1.7123 44 1 5.8499 2.1832 2.6858 45 1 7.1940 3.1227 1.9923 46 1 7.3019 1.2459 0.3382 47 1 5.7782 0.4695 0.8321 48 1 5.3438 1.5587 -1.7079 49 1 5.0172 -0.5457 -3.3592 50 1 6.4521 0.3794 -3.8629 51 1 7.8628 -1.6346 -3.5399 52 1 6.4276 -2.5589 -3.0362 53 1 5.9076 -1.4194 -5.5671 54 1 5.7176 -2.7811 -8.6064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279337804.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:22 Heat of formation + Delta-G solvation = -71.518852 kcal Electronic energy + Delta-G solvation = -31282.737889 eV Core-core repulsion = 27254.393002 eV Total energy + Delta-G solvation = -4028.344887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.02194 -40.36264 -38.58244 -37.01518 -36.66884 -35.35483 -33.88881 -33.83574 -32.63146 -30.82506 -30.48054 -27.92685 -26.44449 -25.94780 -25.23335 -23.80001 -23.34320 -22.17904 -21.52799 -21.04043 -19.77343 -19.32213 -18.25031 -17.59472 -17.14806 -16.89860 -16.78829 -16.53628 -16.28431 -15.77627 -15.57520 -15.33371 -15.23009 -15.07574 -14.84724 -14.68104 -14.38213 -14.20371 -14.14884 -13.72994 -13.60618 -13.39672 -13.13236 -13.02114 -12.94178 -12.86203 -12.60860 -12.56778 -12.42153 -12.37342 -12.18458 -12.14853 -11.90769 -11.85170 -11.71789 -11.64783 -11.59106 -11.37841 -10.99228 -10.83608 -10.05230 -9.94586 -9.32539 -9.07224 -7.98922 -5.29316 1.44976 1.49567 1.55780 1.61963 1.85628 1.96671 2.30810 2.56719 3.33737 3.41990 3.73580 3.76632 3.83708 3.85788 3.95483 4.01935 4.05079 4.13666 4.19386 4.22433 4.27289 4.35727 4.39892 4.50186 4.53018 4.59124 4.62384 4.68932 4.73408 4.74442 4.83402 4.93268 4.97446 5.00473 5.04450 5.09001 5.12055 5.12484 5.13995 5.18686 5.20873 5.24611 5.40118 5.44474 5.46838 5.47860 5.57363 5.67657 6.23169 6.46182 6.61283 7.29524 7.30024 7.37807 7.99541 8.29440 9.24353 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.002548 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.488395 B =10987.569444 C =12311.663934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.101 4.101 4 H 0.118 0.882 5 C -0.140 4.140 6 C 0.495 3.505 7 O -0.549 6.549 8 N -0.608 5.608 9 C 0.101 3.899 10 C -0.134 4.134 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.142 3.858 14 H 0.095 0.905 15 C 0.138 3.862 16 N -0.677 5.677 17 C 0.523 3.477 18 O -0.596 6.596 19 C -0.129 4.129 20 C 0.176 3.824 21 N -0.742 5.742 22 C -0.257 4.257 23 H 0.068 0.932 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.979 3.021 27 H -0.279 1.279 28 H -0.287 1.287 29 H -0.277 1.277 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.402 0.598 49 H 0.096 0.904 50 H 0.107 0.893 51 H 0.013 0.987 52 H 0.005 0.995 53 H 0.378 0.622 54 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.381 24.477 24.436 36.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.122 4.122 4 H 0.135 0.865 5 C -0.198 4.198 6 C 0.283 3.717 7 O -0.426 6.426 8 N -0.343 5.343 9 C -0.020 4.020 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.164 4.164 13 C 0.038 3.962 14 H 0.113 0.887 15 C 0.014 3.986 16 N -0.326 5.326 17 C 0.309 3.691 18 O -0.478 6.478 19 C -0.169 4.169 20 C 0.048 3.952 21 N -0.386 5.386 22 C -0.388 4.388 23 H 0.086 0.914 24 C -0.263 4.263 25 N -0.616 5.616 26 Si 0.806 3.194 27 H -0.205 1.205 28 H -0.212 1.212 29 H -0.203 1.203 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.237 0.763 49 H 0.114 0.886 50 H 0.126 0.874 51 H 0.031 0.969 52 H 0.023 0.977 53 H 0.210 0.790 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.458 23.293 24.741 35.860 hybrid contribution 0.092 -0.905 -0.901 1.280 sum -11.367 22.388 23.840 34.623 Atomic orbital electron populations 1.21794 0.93597 1.02063 1.02970 1.21315 0.97019 0.95026 1.01164 1.21381 0.90409 0.98410 1.02030 0.86465 1.21791 1.03159 1.00588 0.94231 1.21270 0.91162 0.82651 0.76567 1.90963 1.67280 1.34705 1.49682 1.48231 1.05820 1.16293 1.63984 1.22096 0.96790 0.87425 0.95729 1.21937 0.96250 1.02797 0.96202 1.21497 0.95075 0.96106 1.02533 1.21880 1.01470 0.99015 0.94022 1.21486 0.80094 0.95555 0.99038 0.88699 1.21349 0.98023 0.96426 0.82806 1.45610 1.50228 1.24546 1.12240 1.20451 0.78861 0.80852 0.88907 1.90624 1.40842 1.49285 1.67075 1.21561 1.02863 0.99453 0.93045 1.20262 0.96327 0.94011 0.84554 1.42464 1.60356 1.27659 1.08094 1.19571 1.24138 1.00696 0.94423 0.91412 1.25603 1.01179 1.02332 0.97173 1.69798 1.42561 1.39664 1.09600 0.85151 0.78091 0.78972 0.77159 1.20509 1.21225 1.20324 0.91057 0.91437 0.93158 0.93910 0.93570 0.89704 0.90360 0.94014 0.87916 0.89369 0.92496 0.88364 0.90661 0.90478 0.92586 0.89829 0.92839 0.92763 0.76277 0.88567 0.87439 0.96850 0.97697 0.78958 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.28 16 2 C -0.11 -2.02 4.80 30.59 0.15 -1.88 16 3 C -0.10 -1.38 1.90 -11.54 -0.02 -1.40 16 4 H 0.12 0.92 6.23 -2.38 -0.01 0.90 16 5 C -0.14 -1.58 8.92 71.98 0.64 -0.94 16 6 C 0.49 9.42 6.14 87.66 0.54 9.96 16 7 O -0.55 -16.02 9.80 -3.03 -0.03 -16.05 16 8 N -0.61 -7.85 2.97 -795.02 -2.36 -10.21 16 9 C 0.10 0.52 5.89 86.36 0.51 1.03 16 10 C -0.13 -0.58 6.08 30.67 0.19 -0.39 16 11 C -0.11 -0.66 5.88 30.62 0.18 -0.48 16 12 C -0.13 -1.39 5.37 30.67 0.16 -1.22 16 13 C 0.14 2.08 2.95 44.97 0.13 2.22 16 14 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 15 C 0.14 3.47 4.29 86.38 0.37 3.84 16 16 N -0.68 -19.29 3.13 -463.05 -1.45 -20.74 16 17 C 0.52 19.98 7.50 87.66 0.66 20.63 16 18 O -0.60 -28.09 15.97 -3.06 -0.05 -28.14 16 19 C -0.13 -4.97 5.81 29.85 0.17 -4.80 16 20 C 0.18 8.73 5.55 86.38 0.48 9.21 16 21 N -0.74 -42.21 5.60 -343.45 -1.92 -44.13 16 22 C -0.26 -15.82 9.99 84.03 0.84 -14.98 16 23 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 24 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 26 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 27 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.79 6.54 -2.39 -0.02 0.77 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 1.08 8.05 -2.39 -0.02 1.06 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.73 6.51 -2.38 -0.02 0.71 16 36 H 0.08 0.57 7.74 -2.39 -0.02 0.55 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 0.26 5.43 -2.38 -0.01 0.24 16 39 H 0.09 0.21 8.14 -2.39 -0.02 0.20 16 40 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.05 1.43 8.13 -2.38 -0.02 1.41 16 47 H 0.05 1.73 6.47 -2.38 -0.02 1.72 16 48 H 0.40 9.55 7.67 -92.71 -0.71 8.84 16 49 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 50 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 51 H 0.01 0.70 8.10 -2.39 -0.02 0.68 16 52 H 0.00 0.27 8.10 -2.39 -0.02 0.25 16 53 H 0.38 21.73 7.67 -92.70 -0.71 21.02 16 54 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.28 414.41 2.12 -81.16 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.54 Total: 32.59 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.16 Total: 15.71 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -5.46 Total: -135.89 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.08 Total: -44.20 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -83.28 2.12 -81.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279337804.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.645 kcal (2) G-P(sol) polarization free energy of solvation -83.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds