Wall clock time and date at job start Wed Apr 1 2020 00:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47294 * 2 1 4 4 N 1.46899 * 109.46906 * 119.99634 * 2 1 3 5 5 C 1.47901 * 111.00327 * 298.19971 * 4 2 1 6 6 C 1.53988 * 107.05914 * 145.84265 * 5 4 2 7 7 C 1.54592 * 105.14442 * 358.77350 * 6 5 4 8 8 C 1.49015 * 110.96762 * 55.64184 * 4 2 1 9 9 H 1.09001 * 110.68070 * 318.61277 * 8 4 2 10 10 C 1.50693 * 110.86697 * 81.89736 * 8 4 2 11 11 O 1.21287 * 120.00154 * 355.10337 * 10 8 4 12 12 N 1.34780 * 120.00301 * 175.10237 * 10 8 4 13 13 C 1.46498 * 120.00214 * 184.92603 * 12 10 8 14 14 C 1.53001 * 109.49597 * 57.99153 * 13 12 10 15 15 O 1.42898 * 109.47036 * 54.17827 * 14 13 12 16 16 C 1.53041 * 109.49737 * 297.92587 * 13 12 10 17 17 C 1.53042 * 109.53644 * 301.40981 * 16 13 12 18 18 C 1.53188 * 109.31403 * 298.63627 * 17 16 13 19 19 N 1.46919 * 108.77554 * 54.63689 * 18 17 16 20 20 C 1.36942 * 120.63276 * 126.41412 * 19 18 17 21 21 H 1.08004 * 119.99430 * 329.00712 * 20 19 18 22 22 C 1.38803 * 120.00360 * 149.00768 * 20 19 18 23 23 N 1.31629 * 119.99953 * 347.47305 * 22 20 19 24 24 Si 1.86800 * 120.00227 * 167.47275 * 22 20 19 25 25 H 1.48499 * 109.47167 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47005 * 119.99613 * 24 22 20 27 27 H 1.48500 * 109.47339 * 239.99871 * 24 22 20 28 28 C 1.46994 * 118.75554 * 306.38896 * 19 18 17 29 29 H 1.09002 * 109.46433 * 52.05364 * 1 2 3 30 30 H 1.08990 * 109.47391 * 172.04998 * 1 2 3 31 31 H 1.09001 * 109.47066 * 292.05686 * 1 2 3 32 32 H 1.08998 * 109.46974 * 239.99555 * 2 1 3 33 33 H 1.09004 * 109.47029 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47126 * 299.99704 * 3 2 1 35 35 H 1.08998 * 109.47473 * 59.99860 * 3 2 1 36 36 H 1.09001 * 109.91235 * 26.49110 * 5 4 2 37 37 H 1.08993 * 110.07934 * 265.28948 * 5 4 2 38 38 H 1.09009 * 110.31172 * 239.85886 * 6 5 4 39 39 H 1.09004 * 110.31114 * 117.69147 * 6 5 4 40 40 H 1.09000 * 110.72262 * 96.40057 * 7 6 5 41 41 H 1.09000 * 110.72951 * 219.50656 * 7 6 5 42 42 H 0.97005 * 119.99754 * 4.93133 * 12 10 8 43 43 H 1.09002 * 109.47351 * 174.18464 * 14 13 12 44 44 H 1.08997 * 109.47023 * 294.17992 * 14 13 12 45 45 H 0.96701 * 113.99605 * 180.02562 * 15 14 13 46 46 H 1.08999 * 109.46036 * 61.43562 * 16 13 12 47 47 H 1.09006 * 109.45399 * 181.38967 * 16 13 12 48 48 H 1.08997 * 109.49698 * 58.59282 * 17 16 13 49 49 H 1.09003 * 109.49526 * 178.65268 * 17 16 13 50 50 H 1.09003 * 109.58675 * 174.42823 * 18 17 16 51 51 H 1.09005 * 109.58908 * 294.84634 * 18 17 16 52 52 H 0.96999 * 119.99618 * 179.97438 * 23 22 20 53 53 H 1.08994 * 109.58413 * 293.83094 * 28 19 18 54 54 H 1.09009 * 109.62963 * 173.38046 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.5811 0.0029 2.4290 6 6 1.3340 -1.0794 3.4963 7 6 1.6279 -2.4210 2.7866 8 6 1.4569 -2.0695 1.2873 9 1 0.4030 -2.0731 1.0091 10 6 2.2397 -3.0252 0.4243 11 8 3.1305 -2.6101 -0.2864 12 7 1.9500 -4.3414 0.4423 13 6 2.7790 -5.2843 -0.3125 14 6 4.2302 -5.1808 0.1610 15 8 4.2830 -5.3606 1.5776 16 6 2.7033 -4.9504 -1.8041 17 6 1.2476 -5.0209 -2.2711 18 6 0.7183 -6.4439 -2.0667 19 7 0.9208 -6.8266 -0.6627 20 6 -0.1253 -7.2835 0.0938 21 1 -1.1268 -6.9282 -0.0991 22 6 0.1016 -8.2033 1.1082 23 7 1.2608 -8.8216 1.1890 24 14 -1.2383 -8.5637 2.3590 25 1 -2.4371 -7.7435 2.0505 26 1 -1.5951 -10.0041 2.3010 27 1 -0.7476 -8.2298 3.7202 28 6 2.2675 -6.7103 -0.0853 29 1 -0.3632 0.6320 -0.8104 30 1 -0.3633 -1.0177 -0.1421 31 1 -0.3633 0.3859 0.9525 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 0.6594 0.5518 2.2365 37 1 2.3575 0.6885 2.7683 38 1 0.2978 -1.0488 3.8333 39 1 2.0110 -0.9410 4.3393 40 1 2.6464 -2.7507 2.9917 41 1 0.9092 -3.1827 3.0886 42 1 1.1925 -4.6643 0.9550 43 1 4.8272 -5.9521 -0.3258 44 1 4.6269 -4.1985 -0.0956 45 1 5.1747 -5.3070 1.9479 46 1 3.0901 -3.9451 -1.9713 47 1 3.3006 -5.6674 -2.3675 48 1 0.6452 -4.3218 -1.6911 49 1 1.1915 -4.7597 -3.3279 50 1 -0.3450 -6.4759 -2.3045 51 1 1.2607 -7.1322 -2.7150 52 1 1.4194 -9.4641 1.8982 53 1 2.9362 -7.4202 -0.5719 54 1 2.2266 -6.9178 0.9841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279481091.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:43 Heat of formation + Delta-G solvation = -74.424947 kcal Electronic energy + Delta-G solvation = -33389.313498 eV Core-core repulsion = 29360.842593 eV Total energy + Delta-G solvation = -4028.470904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63920 -40.29948 -38.40764 -37.33038 -35.42860 -35.24088 -34.11114 -32.15340 -31.55968 -30.25230 -29.66970 -28.05882 -27.30513 -26.62432 -24.51174 -23.94707 -22.79234 -22.22220 -21.30796 -20.11953 -20.01445 -18.76165 -18.20860 -18.07803 -17.60358 -16.91484 -16.34282 -16.08478 -16.03915 -15.73018 -15.34041 -15.14114 -14.99075 -14.76628 -14.70002 -14.61453 -14.16194 -14.07513 -13.87947 -13.65057 -13.45801 -13.24133 -13.05084 -12.87361 -12.74676 -12.68112 -12.57478 -12.48280 -12.37917 -12.22378 -12.17722 -11.97478 -11.93998 -11.68031 -11.64396 -11.46334 -11.34588 -11.18317 -10.96845 -10.53937 -10.25752 -9.71872 -9.22117 -8.60925 -7.83261 -5.33720 1.48424 1.51253 1.60275 1.86762 2.26917 2.52915 3.11854 3.32405 3.36706 3.62762 3.65507 3.69392 3.93939 4.03232 4.07446 4.11286 4.18113 4.23860 4.25009 4.31903 4.37572 4.44149 4.48979 4.56245 4.63883 4.68984 4.73578 4.79206 4.81894 4.85312 4.90071 4.93428 4.95865 4.98331 5.00245 5.11626 5.12245 5.13406 5.20674 5.23390 5.34182 5.35944 5.40968 5.49335 5.65589 5.76620 5.82564 5.92915 6.19438 6.43964 6.87841 6.93132 7.17580 7.51626 7.86129 8.41301 9.22298 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.004335 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.760042 B = 6458.024459 C = 7046.673730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 C -0.134 4.134 4 N -0.501 5.501 5 C 0.031 3.969 6 C -0.122 4.122 7 C -0.110 4.110 8 C 0.044 3.956 9 H 0.086 0.914 10 C 0.527 3.473 11 O -0.562 6.562 12 N -0.687 5.687 13 C 0.164 3.836 14 C 0.077 3.923 15 O -0.575 6.575 16 C -0.115 4.115 17 C -0.113 4.113 18 C 0.140 3.860 19 N -0.603 5.603 20 C -0.260 4.260 21 H 0.067 0.933 22 C -0.040 4.040 23 N -0.930 5.930 24 Si 0.962 3.038 25 H -0.265 1.265 26 H -0.297 1.297 27 H -0.291 1.291 28 C 0.194 3.806 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.400 0.600 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.387 0.613 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.055 0.945 51 H 0.014 0.986 52 H 0.249 0.751 53 H 0.002 0.998 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 18.153 1.160 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 C -0.191 4.191 4 N -0.226 5.226 5 C -0.096 4.096 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.067 4.067 9 H 0.103 0.897 10 C 0.313 3.687 11 O -0.441 6.441 12 N -0.337 5.337 13 C 0.075 3.925 14 C -0.002 4.002 15 O -0.381 6.381 16 C -0.153 4.153 17 C -0.152 4.152 18 C 0.015 3.985 19 N -0.326 5.326 20 C -0.390 4.390 21 H 0.085 0.915 22 C -0.236 4.236 23 N -0.575 5.575 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.224 1.224 27 H -0.217 1.217 28 C 0.068 3.932 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.234 0.766 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.235 0.765 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.074 0.926 51 H 0.032 0.968 52 H 0.058 0.942 53 H 0.020 0.980 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.297 18.253 0.634 18.310 hybrid contribution -0.888 -1.110 0.762 1.613 sum 0.408 17.143 1.396 17.204 Atomic orbital electron populations 1.22476 0.96675 1.01738 1.03406 1.21806 0.93219 0.96024 0.93154 1.21760 1.01173 0.93572 1.02624 1.64778 1.55390 0.99804 1.02616 1.23003 1.00468 0.96926 0.89196 1.22398 1.02966 0.92511 0.98150 1.22386 1.02356 0.98836 0.91306 1.22803 0.97360 0.90290 0.96266 0.89659 1.20485 0.83796 0.82480 0.81901 1.90539 1.33308 1.77924 1.42358 1.45740 1.32007 1.05767 1.50151 1.20965 0.88839 0.91427 0.91225 1.22436 0.96362 0.99708 0.81691 1.86517 1.34551 1.95850 1.21224 1.21705 0.97788 1.01937 0.93901 1.21762 0.95429 0.97650 1.00385 1.21082 0.98553 0.93407 0.85457 1.44223 1.05835 1.75511 1.07024 1.19445 0.89221 1.17986 1.12381 0.91536 1.25807 0.98724 0.96268 1.02831 1.70145 1.24875 1.28620 1.33862 0.85296 0.79510 0.77115 0.79039 1.18879 1.22415 1.21738 1.20633 0.84762 0.88720 0.99121 0.90730 0.93678 0.90929 0.92115 0.93057 0.91140 0.91466 0.91618 0.89715 0.89741 0.89860 0.92004 0.90232 0.76622 0.93277 0.92633 0.76542 0.91035 0.91861 0.93232 0.90662 0.92626 0.96843 0.94219 0.97984 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 8.39 71.98 0.60 -2.99 16 2 C 0.07 1.56 2.89 44.91 0.13 1.69 16 3 C -0.13 -2.49 9.05 71.98 0.65 -1.83 16 4 N -0.50 -12.80 4.67 -836.32 -3.90 -16.70 16 5 C 0.03 0.60 5.14 86.44 0.44 1.04 16 6 C -0.12 -2.26 6.93 31.47 0.22 -2.05 16 7 C -0.11 -2.77 6.43 31.80 0.20 -2.57 16 8 C 0.04 1.23 2.54 44.42 0.11 1.34 16 9 H 0.09 2.27 5.68 -2.39 -0.01 2.26 16 10 C 0.53 18.19 6.53 87.65 0.57 18.76 16 11 O -0.56 -21.82 11.97 -3.05 -0.04 -21.85 16 12 N -0.69 -25.32 3.87 -422.57 -1.64 -26.96 16 13 C 0.16 6.36 0.45 3.68 0.00 6.36 16 14 C 0.08 2.78 5.59 71.98 0.40 3.19 16 15 O -0.58 -20.51 13.08 -148.98 -1.95 -22.46 16 16 C -0.11 -4.14 4.50 30.62 0.14 -4.00 16 17 C -0.11 -3.97 5.93 30.67 0.18 -3.79 16 18 C 0.14 5.75 6.52 86.36 0.56 6.32 16 19 N -0.60 -28.97 2.86 -698.93 -2.00 -30.96 16 20 C -0.26 -13.55 9.58 84.03 0.80 -12.75 16 21 H 0.07 3.38 7.86 -2.91 -0.02 3.36 16 22 C -0.04 -2.14 5.01 84.86 0.42 -1.72 16 23 N -0.93 -53.45 11.13 21.65 0.24 -53.21 16 24 Si 0.96 43.26 29.57 68.60 2.03 45.28 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 28 C 0.19 9.17 3.82 86.35 0.33 9.50 16 29 H 0.07 1.25 8.13 -2.39 -0.02 1.24 16 30 H 0.04 1.00 6.43 -2.39 -0.02 0.99 16 31 H 0.07 1.22 5.86 -2.39 -0.01 1.20 16 32 H 0.06 1.80 7.35 -2.39 -0.02 1.79 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.04 6.95 -2.39 -0.02 1.03 16 36 H 0.07 1.06 5.24 -2.39 -0.01 1.05 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.06 1.79 8.05 -2.39 -0.02 1.78 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.40 15.63 8.44 -92.70 -0.78 14.85 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 2.04 6.38 -2.39 -0.02 2.02 16 45 H 0.39 9.91 9.12 -74.06 -0.68 9.23 16 46 H 0.07 2.64 6.20 -2.39 -0.01 2.62 16 47 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.05 1.80 7.53 -2.39 -0.02 1.79 16 49 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.06 2.21 7.93 -2.39 -0.02 2.20 16 51 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 52 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 53 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 54 H 0.07 3.76 6.00 -2.38 -0.01 3.75 16 Total: -1.00 -64.80 398.79 -2.03 -66.83 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -0.55 Total: 43.54 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.78 Total: 16.50 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -7.30 Total: -127.83 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.99 Total: -44.32 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.80 -2.03 -66.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279481091.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.598 kcal (2) G-P(sol) polarization free energy of solvation -64.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds