Wall clock time and date at job start Tue Mar 31 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 H 1.09005 * 109.47020 * 54.45401 * 3 2 1 5 5 C 1.52995 * 109.47410 * 294.45697 * 3 2 1 6 6 C 1.53001 * 109.47285 * 174.44934 * 3 2 1 7 7 H 1.08993 * 109.47682 * 303.40788 * 6 3 2 8 8 O 1.42904 * 109.46861 * 63.40862 * 6 3 2 9 9 C 1.42900 * 113.99861 * 205.39887 * 8 6 3 10 10 C 1.50707 * 109.47045 * 183.40348 * 6 3 2 11 11 O 1.21287 * 119.99805 * 245.00303 * 10 6 3 12 12 N 1.34772 * 120.00077 * 65.00259 * 10 6 3 13 13 C 1.47075 * 120.88454 * 179.97438 * 12 10 6 14 14 C 1.53236 * 108.52476 * 231.21097 * 13 12 10 15 15 N 1.46901 * 109.33833 * 306.17003 * 14 13 12 16 16 C 1.46897 * 111.00209 * 187.25586 * 15 14 13 17 17 C 1.53945 * 113.73917 * 273.74147 * 16 15 14 18 18 N 1.47816 * 86.03501 * 222.08103 * 17 16 15 19 19 C 1.36935 * 134.45350 * 204.64351 * 18 17 16 20 20 H 1.08002 * 119.99632 * 179.87088 * 19 18 17 21 21 C 1.38810 * 120.00445 * 359.86900 * 19 18 17 22 22 N 1.31619 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47063 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47324 * 119.99832 * 23 21 19 26 26 H 1.48507 * 109.46825 * 239.99908 * 23 21 19 27 27 C 1.47575 * 91.05038 * 24.54810 * 18 17 16 28 28 C 1.46900 * 111.27117 * 63.10321 * 15 14 13 29 29 C 1.47083 * 120.87942 * 0.02570 * 12 10 6 30 30 H 1.09007 * 109.46891 * 59.99286 * 1 2 3 31 31 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47121 * 300.00284 * 1 2 3 33 33 H 1.09001 * 109.47108 * 240.00649 * 2 1 3 34 34 H 1.08991 * 109.47245 * 120.00454 * 2 1 3 35 35 H 1.09005 * 109.47531 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47253 * 299.99263 * 5 3 2 37 37 H 1.08999 * 109.47774 * 59.99499 * 5 3 2 38 38 H 1.08998 * 109.46811 * 304.97828 * 9 8 6 39 39 H 1.08998 * 109.47547 * 64.98019 * 9 8 6 40 40 H 1.09003 * 109.47161 * 184.98610 * 9 8 6 41 41 H 1.08999 * 109.62911 * 111.49363 * 13 12 10 42 42 H 1.09007 * 109.62440 * 350.92092 * 13 12 10 43 43 H 1.09002 * 109.49309 * 186.20997 * 14 13 12 44 44 H 1.08995 * 109.49354 * 66.12931 * 14 13 12 45 45 H 1.09002 * 112.94281 * 45.32808 * 16 15 14 46 46 H 1.09003 * 113.76890 * 336.34359 * 17 16 15 47 47 H 1.09004 * 113.76886 * 107.74408 * 17 16 15 48 48 H 0.97000 * 119.99647 * 180.02562 * 22 21 19 49 49 H 1.08997 * 113.76903 * 221.15035 * 27 18 17 50 50 H 1.09004 * 113.87304 * 89.76561 * 27 18 17 51 51 H 1.08997 * 109.49020 * 56.85346 * 28 15 14 52 52 H 1.09001 * 109.49431 * 176.93762 * 28 15 14 53 53 H 1.09010 * 109.62597 * 248.50242 * 29 12 10 54 54 H 1.09006 * 109.63034 * 9.07644 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 0.8362 5 6 1.6471 2.1224 -1.3130 6 6 3.5637 1.4447 0.1395 7 1 3.8465 0.9074 1.0447 8 8 4.1469 0.8037 -0.9968 9 6 5.4360 0.2395 -0.7477 10 6 4.0583 2.8658 0.2236 11 8 4.7614 3.3161 -0.6561 12 7 3.7194 3.6362 1.2762 13 6 4.1917 5.0253 1.3782 14 6 4.8277 5.2232 2.7582 15 7 3.8730 4.8138 3.7970 16 6 4.3767 5.1477 5.1359 17 6 5.2899 4.0666 5.7419 18 7 4.5661 4.3100 7.0075 19 6 4.8667 4.1390 8.3324 20 1 4.1429 4.4039 9.0889 21 6 6.1017 3.6251 8.7032 22 7 6.9836 3.3017 7.7813 23 14 6.5116 3.3911 10.5107 24 1 5.3594 3.8270 11.3399 25 1 6.7959 1.9573 10.7722 26 1 7.7054 4.2037 10.8567 27 6 3.3910 4.8134 6.2702 28 6 3.5559 3.3831 3.6954 29 6 2.8683 3.1096 2.3540 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0108 3.1500 -1.3132 36 1 2.0893 1.5808 -2.1492 37 1 0.5616 2.1209 -1.4124 38 1 6.0985 1.0084 -0.3503 39 1 5.3445 -0.5706 -0.0243 40 1 5.8483 -0.1496 -1.6787 41 1 3.3498 5.7077 1.2616 42 1 4.9328 5.2179 0.6024 43 1 5.0838 6.2740 2.8933 44 1 5.7296 4.6159 2.8335 45 1 4.7894 6.1548 5.1958 46 1 5.1277 3.0716 5.3274 47 1 6.3423 4.3486 5.7751 48 1 7.8465 2.9422 8.0404 49 1 2.9300 5.6905 6.7243 50 1 2.6685 4.0396 6.0105 51 1 4.4757 2.8014 3.7576 52 1 2.8898 3.0994 4.5103 53 1 1.8989 3.6076 2.3315 54 1 2.7345 2.0357 2.2234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281589069.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:09 Heat of formation + Delta-G solvation = -29.876258 kcal Electronic energy + Delta-G solvation = -31818.950586 eV Core-core repulsion = 27792.411458 eV Total energy + Delta-G solvation = -4026.539128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82911 -40.60808 -38.87050 -37.84950 -36.67640 -35.14855 -33.82269 -32.40955 -31.21411 -29.77987 -28.69413 -27.78066 -26.99376 -26.60983 -25.10285 -24.85745 -24.21115 -22.43031 -21.03279 -20.76128 -19.78676 -18.75014 -18.36602 -17.81190 -17.37918 -16.97167 -16.90446 -16.34138 -16.19680 -15.94468 -15.79863 -15.63592 -15.42205 -15.31113 -14.66376 -14.46368 -14.36459 -14.00181 -13.83256 -13.73997 -13.43285 -13.39903 -13.22170 -13.00883 -12.86390 -12.84744 -12.69031 -12.64248 -12.28938 -12.23020 -12.16523 -12.09731 -11.91762 -11.81036 -11.73153 -11.65605 -11.39194 -11.38163 -11.36230 -10.86764 -10.26490 -9.82722 -9.26042 -8.86339 -7.92008 -5.25674 1.44293 1.44862 1.48059 1.55388 1.83068 2.43901 2.71829 2.83299 3.28565 3.31453 3.48405 3.69257 3.77497 3.83322 3.89464 3.97040 4.03481 4.13902 4.20364 4.26983 4.34984 4.41751 4.43597 4.45935 4.47947 4.61581 4.63909 4.66955 4.70399 4.74192 4.78063 4.79813 4.80795 4.87318 4.94207 4.99769 5.03379 5.06977 5.16426 5.22180 5.25009 5.27934 5.36932 5.39396 5.48797 5.50521 5.57051 5.89588 5.95094 6.05558 6.11681 6.34940 6.89561 7.06837 7.59415 8.54463 9.24224 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.002674 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.152386 B =10470.372940 C =10660.049019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.084 4.084 4 H 0.107 0.893 5 C -0.138 4.138 6 C 0.077 3.923 7 H 0.098 0.902 8 O -0.367 6.367 9 C 0.026 3.974 10 C 0.491 3.509 11 O -0.574 6.574 12 N -0.608 5.608 13 C 0.123 3.877 14 C 0.046 3.954 15 N -0.513 5.513 16 C 0.064 3.936 17 C 0.133 3.867 18 N -0.640 5.640 19 C -0.229 4.229 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.956 5.956 23 Si 0.978 3.022 24 H -0.262 1.262 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.131 3.869 28 C 0.035 3.965 29 C 0.113 3.887 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.015 0.985 45 H 0.101 0.899 46 H 0.023 0.977 47 H 0.026 0.974 48 H 0.246 0.754 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.022 0.978 52 H 0.095 0.905 53 H 0.104 0.896 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -4.319 -17.469 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.102 4.102 4 H 0.125 0.875 5 C -0.196 4.196 6 C 0.015 3.985 7 H 0.115 0.885 8 O -0.285 6.285 9 C -0.070 4.070 10 C 0.280 3.720 11 O -0.453 6.453 12 N -0.343 5.343 13 C 0.000 4.000 14 C -0.083 4.083 15 N -0.237 5.237 16 C -0.046 4.046 17 C 0.005 3.995 18 N -0.367 5.367 19 C -0.357 4.357 20 H 0.104 0.896 21 C -0.262 4.262 22 N -0.605 5.605 23 Si 0.806 3.194 24 H -0.186 1.186 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.006 3.994 28 C -0.093 4.093 29 C -0.009 4.009 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.034 0.966 45 H 0.119 0.881 46 H 0.041 0.959 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.040 0.960 52 H 0.113 0.887 53 H 0.122 0.878 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.456 -3.910 -17.943 22.767 hybrid contribution 2.145 -0.642 1.488 2.689 sum -11.311 -4.552 -16.456 20.480 Atomic orbital electron populations 1.21815 0.94479 1.02236 1.02418 1.21491 0.96812 0.94041 1.02659 1.21498 0.88919 0.99278 1.00554 0.87485 1.21720 1.02031 0.98938 0.96866 1.22302 0.96309 0.88606 0.91242 0.88479 1.87940 1.33228 1.72845 1.34443 1.22948 0.83865 0.96839 1.03389 1.21868 0.79673 0.89481 0.80969 1.90662 1.39538 1.75103 1.40017 1.48338 1.50726 1.13395 1.21813 1.21670 1.00218 0.82223 0.95846 1.22434 0.92862 1.01803 0.91202 1.62073 1.42380 1.16948 1.02266 1.23850 0.95359 0.98592 0.86770 1.22860 0.96251 0.95471 0.84873 1.46191 1.14793 1.74908 1.00795 1.19467 0.98955 1.34997 0.82295 0.89559 1.25626 0.96752 1.02052 1.01800 1.70037 1.07216 1.50424 1.32858 0.85017 0.77871 0.76808 0.79703 1.18638 1.22069 1.22132 1.22793 0.90542 0.96915 0.89110 1.22623 0.99584 0.88515 0.98606 1.22227 0.94221 1.00832 0.83606 0.92379 0.92176 0.91857 0.91936 0.91174 0.94832 0.92981 0.90371 0.95659 0.92053 0.88038 0.88896 0.90075 0.88289 0.96639 0.88101 0.95900 0.95530 0.94524 0.92388 0.92576 0.95969 0.88698 0.87844 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.68 71.98 0.70 -0.87 16 2 C -0.11 -1.43 5.21 30.59 0.16 -1.27 16 3 C -0.08 -1.29 1.81 -10.80 -0.02 -1.31 16 4 H 0.11 1.33 5.45 -2.38 -0.01 1.32 16 5 C -0.14 -2.44 8.57 71.98 0.62 -1.82 16 6 C 0.08 1.57 1.38 29.85 0.04 1.61 16 7 H 0.10 1.72 7.15 -2.39 -0.02 1.70 16 8 O -0.37 -8.57 8.68 -129.99 -1.13 -9.70 16 9 C 0.03 0.51 10.71 113.37 1.21 1.73 16 10 C 0.49 12.88 5.77 87.66 0.51 13.39 16 11 O -0.57 -19.70 15.73 15.94 0.25 -19.45 16 12 N -0.61 -13.99 3.01 -817.98 -2.46 -16.45 16 13 C 0.12 2.87 6.60 86.35 0.57 3.44 16 14 C 0.05 1.19 5.61 86.38 0.49 1.68 16 15 N -0.51 -14.12 4.76 -876.10 -4.17 -18.29 16 16 C 0.06 2.24 4.03 46.67 0.19 2.43 16 17 C 0.13 6.16 6.81 86.44 0.59 6.74 16 18 N -0.64 -31.96 3.70 -716.67 -2.65 -34.62 16 19 C -0.23 -12.64 10.70 84.03 0.90 -11.74 16 20 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.96 -57.96 11.39 21.65 0.25 -57.72 16 23 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 C 0.13 4.92 8.42 86.49 0.73 5.65 16 28 C 0.04 0.90 4.47 86.37 0.39 1.29 16 29 C 0.11 2.08 5.03 86.33 0.43 2.51 16 30 H 0.06 0.59 6.58 -2.38 -0.02 0.58 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.93 7.93 -2.39 -0.02 0.91 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.03 0.71 7.33 -2.38 -0.02 0.70 16 36 H 0.05 1.06 7.60 -2.39 -0.02 1.05 16 37 H 0.08 1.05 6.58 -2.39 -0.02 1.04 16 38 H 0.02 0.60 7.82 -2.39 -0.02 0.58 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 2.11 7.06 -2.38 -0.02 2.09 16 43 H 0.10 2.33 8.04 -2.39 -0.02 2.31 16 44 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 3.55 8.04 -2.39 -0.02 3.54 16 46 H 0.02 1.10 5.65 -2.39 -0.01 1.09 16 47 H 0.03 1.44 7.17 -2.38 -0.02 1.42 16 48 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 49 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.06 1.93 6.23 -2.38 -0.01 1.91 16 51 H 0.02 0.69 6.45 -2.39 -0.02 0.67 16 52 H 0.09 2.44 6.06 -2.39 -0.01 2.42 16 53 H 0.10 1.52 8.11 -2.38 -0.02 1.50 16 54 H 0.11 1.53 4.90 -2.38 -0.01 1.52 16 Total: -1.00 -72.87 403.85 0.95 -71.92 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.88 Total: 16.81 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 7.96 Total: 19.96 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -9.04 Total: -127.07 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.88 Total: -29.15 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.87 0.95 -71.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281589069.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.046 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds