Wall clock time and date at job start Tue Mar 31 2020 22:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 H 1.09001 * 109.47550 * 305.00501 * 3 2 1 5 5 C 1.53006 * 109.46880 * 65.00519 * 3 2 1 6 6 C 1.53000 * 109.47296 * 185.00030 * 3 2 1 7 7 H 1.09004 * 109.46743 * 58.11408 * 6 3 2 8 8 O 1.42900 * 109.47113 * 298.11223 * 6 3 2 9 9 C 1.42901 * 113.99552 * 149.99646 * 8 6 3 10 10 C 1.50700 * 109.47495 * 178.11170 * 6 3 2 11 11 O 1.21280 * 119.99961 * 113.34158 * 10 6 3 12 12 N 1.34778 * 120.00029 * 293.34865 * 10 6 3 13 13 C 1.47084 * 120.87888 * 355.44747 * 12 10 6 14 14 C 1.53239 * 108.51929 * 231.20662 * 13 12 10 15 15 N 1.46900 * 109.34194 * 306.17317 * 14 13 12 16 16 C 1.46899 * 110.99607 * 187.25413 * 15 14 13 17 17 C 1.53947 * 113.74281 * 273.73433 * 16 15 14 18 18 N 1.47809 * 86.04000 * 222.08856 * 17 16 15 19 19 C 1.36934 * 134.45909 * 204.64525 * 18 17 16 20 20 H 1.07997 * 120.00492 * 173.80217 * 19 18 17 21 21 C 1.38811 * 119.99828 * 353.79864 * 19 18 17 22 22 N 1.31621 * 120.00102 * 5.03962 * 21 19 18 23 23 Si 1.86802 * 120.00293 * 185.04039 * 21 19 18 24 24 H 1.48506 * 109.46983 * 94.98960 * 23 21 19 25 25 H 1.48498 * 109.47089 * 214.99210 * 23 21 19 26 26 H 1.48505 * 109.46904 * 334.99614 * 23 21 19 27 27 C 1.47583 * 91.05038 * 24.54970 * 18 17 16 28 28 C 1.46896 * 111.26874 * 63.10419 * 15 14 13 29 29 C 1.47076 * 120.88169 * 175.47200 * 12 10 6 30 30 H 1.08995 * 109.47720 * 59.99278 * 1 2 3 31 31 H 1.09006 * 109.46849 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46794 * 299.99198 * 1 2 3 33 33 H 1.09000 * 109.46794 * 240.00802 * 2 1 3 34 34 H 1.08991 * 109.47424 * 120.00329 * 2 1 3 35 35 H 1.09001 * 109.47044 * 59.99671 * 5 3 2 36 36 H 1.09001 * 109.47506 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.46921 * 299.99648 * 5 3 2 38 38 H 1.09003 * 109.47703 * 299.99901 * 9 8 6 39 39 H 1.09000 * 109.47445 * 60.00231 * 9 8 6 40 40 H 1.09007 * 109.46777 * 180.02562 * 9 8 6 41 41 H 1.09000 * 109.62846 * 111.49805 * 13 12 10 42 42 H 1.09003 * 109.62845 * 350.91934 * 13 12 10 43 43 H 1.09001 * 109.49291 * 186.21288 * 14 13 12 44 44 H 1.09001 * 109.48994 * 66.13081 * 14 13 12 45 45 H 1.08992 * 112.94767 * 45.33388 * 16 15 14 46 46 H 1.09007 * 113.76864 * 336.36019 * 17 16 15 47 47 H 1.08997 * 113.76452 * 107.74719 * 17 16 15 48 48 H 0.96995 * 120.00133 * 179.97438 * 22 21 19 49 49 H 1.08994 * 113.77213 * 221.15006 * 27 18 17 50 50 H 1.09004 * 113.86636 * 89.76609 * 27 18 17 51 51 H 1.08997 * 109.49482 * 56.85669 * 28 15 14 52 52 H 1.09001 * 109.49106 * 176.93465 * 28 15 14 53 53 H 1.08999 * 109.62835 * 248.50078 * 29 12 10 54 54 H 1.08996 * 109.62756 * 9.08099 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5648 1.4445 -0.1257 7 1 3.8545 0.9276 -1.0407 8 8 4.1364 0.7760 1.0005 9 6 5.3782 0.1260 0.7218 10 6 4.0632 2.8659 -0.1724 11 8 4.7343 3.3033 0.7382 12 7 3.7632 3.6510 -1.2260 13 6 3.0360 3.1127 -2.3857 14 6 3.8119 3.4733 -3.6569 15 7 4.0464 4.9231 -3.6891 16 6 4.6350 5.3328 -4.9711 17 6 6.1699 5.2218 -5.0122 18 7 6.1431 6.5253 -5.7085 19 6 6.9890 7.1691 -6.5717 20 1 6.6881 8.1001 -7.0290 21 6 8.2333 6.6251 -6.8591 22 7 8.5612 5.4433 -6.3812 23 14 9.4426 7.5701 -7.9240 24 1 10.3721 8.3371 -7.0561 25 1 10.2173 6.6169 -8.7584 26 1 8.6996 8.5078 -8.8038 27 6 4.8382 6.8532 -5.1020 28 6 4.8866 5.3520 -2.5630 29 6 4.1547 5.0685 -1.2469 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0699 1.5873 2.1492 36 1 1.9988 3.1540 1.3078 37 1 0.5489 2.1251 1.3971 38 1 5.2296 -0.6234 -0.0557 39 1 6.1058 0.8630 0.3818 40 1 5.7461 -0.3578 1.6266 41 1 2.0390 3.5512 -2.4284 42 1 2.9589 2.0289 -2.2987 43 1 3.2328 3.1790 -4.5323 44 1 4.7681 2.9500 -3.6601 45 1 4.1391 4.8808 -5.8301 46 1 6.6395 5.2583 -4.0291 47 1 6.5345 4.4004 -5.6288 48 1 9.4305 5.0630 -6.5823 49 1 4.1417 7.3319 -5.7903 50 1 4.9139 7.3703 -4.1455 51 1 5.8278 4.8027 -2.5815 52 1 5.0869 6.4203 -2.6450 53 1 3.2653 5.6950 -1.1802 54 1 4.8172 5.2778 -0.4070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281589071.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:13 Heat of formation + Delta-G solvation = -32.198419 kcal Electronic energy + Delta-G solvation = -31660.687312 eV Core-core repulsion = 27634.047487 eV Total energy + Delta-G solvation = -4026.639825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79419 -40.61367 -38.86994 -37.85368 -36.63207 -35.16137 -33.79629 -32.48118 -31.18956 -29.79933 -28.61336 -27.75707 -27.05591 -26.64618 -25.24333 -24.64409 -24.19380 -22.52625 -20.97800 -20.73784 -19.75927 -18.74844 -18.41846 -17.83692 -17.27907 -16.99066 -16.89817 -16.42710 -16.20271 -15.95330 -15.76313 -15.58813 -15.43417 -15.28489 -14.67190 -14.46998 -14.35354 -14.03987 -13.84234 -13.75348 -13.43411 -13.36140 -13.25014 -12.99421 -12.84443 -12.82769 -12.72142 -12.62589 -12.32867 -12.23826 -12.15229 -12.01596 -11.91286 -11.86340 -11.74169 -11.68112 -11.44768 -11.35610 -11.31157 -10.88563 -10.25865 -9.81897 -9.25956 -8.88331 -7.95424 -5.28417 1.41931 1.44104 1.49827 1.53016 1.83196 2.42253 2.74221 2.83232 3.24560 3.34622 3.47873 3.70602 3.77739 3.82438 3.89893 4.00007 4.04679 4.12367 4.20205 4.27351 4.36241 4.42618 4.45348 4.47553 4.51336 4.56431 4.64641 4.67636 4.72074 4.76053 4.79628 4.81782 4.84304 4.86976 4.92049 4.97106 5.04089 5.08440 5.18288 5.18666 5.26496 5.29558 5.33835 5.42384 5.45959 5.52227 5.59197 5.87207 5.96727 6.02095 6.14863 6.38484 6.87192 7.09329 7.56767 8.52711 9.21419 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002474 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.239188 B =11316.918974 C =11731.630184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.080 4.080 4 H 0.108 0.892 5 C -0.140 4.140 6 C 0.079 3.921 7 H 0.106 0.894 8 O -0.370 6.370 9 C 0.025 3.975 10 C 0.489 3.511 11 O -0.578 6.578 12 N -0.609 5.609 13 C 0.112 3.888 14 C 0.035 3.965 15 N -0.513 5.513 16 C 0.068 3.932 17 C 0.135 3.865 18 N -0.641 5.641 19 C -0.232 4.232 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.977 3.023 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.263 1.263 27 C 0.127 3.873 28 C 0.047 3.953 29 C 0.125 3.875 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.020 0.980 45 H 0.113 0.887 46 H 0.014 0.986 47 H 0.028 0.972 48 H 0.247 0.753 49 H 0.061 0.939 50 H 0.045 0.955 51 H 0.015 0.985 52 H 0.081 0.919 53 H 0.093 0.907 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.399 -13.196 11.712 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.099 4.099 4 H 0.126 0.874 5 C -0.198 4.198 6 C 0.017 3.983 7 H 0.123 0.877 8 O -0.287 6.287 9 C -0.071 4.071 10 C 0.278 3.722 11 O -0.458 6.458 12 N -0.344 5.344 13 C -0.010 4.010 14 C -0.093 4.093 15 N -0.236 5.236 16 C -0.041 4.041 17 C 0.008 3.992 18 N -0.368 5.368 19 C -0.361 4.361 20 H 0.104 0.896 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.806 3.194 24 H -0.218 1.218 25 H -0.221 1.221 26 H -0.187 1.187 27 C 0.002 3.998 28 C -0.082 4.082 29 C 0.002 3.998 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.039 0.961 45 H 0.131 0.869 46 H 0.031 0.969 47 H 0.047 0.953 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.033 0.967 52 H 0.099 0.901 53 H 0.111 0.889 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.342 -12.703 12.249 26.182 hybrid contribution 2.802 0.405 -0.709 2.919 sum -16.540 -12.298 11.541 23.622 Atomic orbital electron populations 1.21817 0.94587 1.02211 1.02354 1.21481 0.96694 0.93890 1.02796 1.21434 0.88896 0.99279 1.00288 0.87397 1.21741 1.01972 0.98842 0.97216 1.22335 0.96288 0.88030 0.91608 0.87654 1.87952 1.37422 1.69071 1.34271 1.22985 0.84905 0.95912 1.03342 1.21986 0.79207 0.89694 0.81284 1.90671 1.40350 1.75926 1.38827 1.48355 1.56768 1.10584 1.18665 1.22244 0.96132 1.00563 0.82039 1.22619 0.99448 0.87267 1.00002 1.62071 1.45886 1.14438 1.01242 1.23864 0.92129 0.96367 0.91745 1.22792 0.94149 0.88820 0.93426 1.46217 1.21670 1.18831 1.50042 1.19438 0.95344 1.04264 1.17017 0.89582 1.25679 0.99301 0.98276 1.02969 1.70035 1.21577 1.17769 1.50968 0.85069 0.78847 0.77599 0.77928 1.21791 1.22074 1.18730 1.22804 0.86159 0.94842 0.96018 1.22432 0.93837 1.01076 0.90868 1.21603 1.00252 0.81725 0.96204 0.91695 0.92137 0.92721 0.90634 0.92144 0.93194 0.95128 0.90388 0.91460 0.95968 0.88111 0.87741 0.86870 0.86847 0.96135 0.86886 0.96867 0.95324 0.94423 0.92045 0.93705 0.96716 0.90078 0.88871 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 71.98 0.70 -0.59 16 2 C -0.11 -1.18 5.21 30.59 0.16 -1.02 16 3 C -0.08 -1.11 1.93 -10.79 -0.02 -1.13 16 4 H 0.11 1.10 5.97 -2.39 -0.01 1.09 16 5 C -0.14 -2.45 8.56 71.98 0.62 -1.83 16 6 C 0.08 1.50 1.40 29.85 0.04 1.54 16 7 H 0.11 1.52 6.75 -2.38 -0.02 1.50 16 8 O -0.37 -8.36 8.64 -130.03 -1.12 -9.48 16 9 C 0.02 0.46 10.81 113.37 1.23 1.69 16 10 C 0.49 12.94 5.86 87.66 0.51 13.45 16 11 O -0.58 -20.88 15.96 15.92 0.25 -20.63 16 12 N -0.61 -14.08 3.01 -817.93 -2.46 -16.54 16 13 C 0.11 1.76 5.06 86.35 0.44 2.20 16 14 C 0.04 0.75 5.61 86.38 0.48 1.24 16 15 N -0.51 -14.14 4.76 -875.98 -4.17 -18.31 16 16 C 0.07 2.39 4.03 46.67 0.19 2.58 16 17 C 0.14 6.43 6.73 86.44 0.58 7.01 16 18 N -0.64 -32.97 3.70 -716.59 -2.65 -35.62 16 19 C -0.23 -13.14 10.70 84.03 0.90 -12.24 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 22 N -0.95 -58.77 11.50 21.65 0.25 -58.52 16 23 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 27 C 0.13 4.97 8.42 86.49 0.73 5.70 16 28 C 0.05 1.43 4.47 86.38 0.39 1.81 16 29 C 0.13 3.27 6.61 86.35 0.57 3.84 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.50 6.56 -2.39 -0.02 0.49 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.80 7.88 -2.39 -0.02 0.79 16 35 H 0.05 1.03 7.63 -2.39 -0.02 1.01 16 36 H 0.03 0.66 7.28 -2.39 -0.02 0.65 16 37 H 0.08 1.03 6.57 -2.39 -0.02 1.02 16 38 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 39 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 42 H 0.11 1.14 5.19 -2.39 -0.01 1.13 16 43 H 0.11 1.91 8.04 -2.39 -0.02 1.89 16 44 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 3.72 8.04 -2.39 -0.02 3.70 16 46 H 0.01 0.69 5.65 -2.38 -0.01 0.68 16 47 H 0.03 1.54 7.34 -2.39 -0.02 1.52 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.05 1.72 6.23 -2.39 -0.01 1.70 16 51 H 0.01 0.55 6.45 -2.39 -0.02 0.53 16 52 H 0.08 2.64 6.06 -2.39 -0.01 2.63 16 53 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 54 H 0.07 2.22 7.04 -2.39 -0.02 2.20 16 Total: -1.00 -76.66 405.16 0.98 -75.68 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.87 Total: 14.42 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 7.98 Total: 20.69 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -9.03 Total: -128.99 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.87 Total: -30.11 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -76.66 0.98 -75.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281589071.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.483 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds