Wall clock time and date at job start Tue Mar 31 2020 22:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 H 1.08999 * 109.47414 * 54.99818 * 3 2 1 5 5 C 1.52998 * 109.47014 * 294.99469 * 3 2 1 6 6 C 1.52998 * 109.46971 * 174.99723 * 3 2 1 7 7 H 1.09001 * 109.47302 * 65.07808 * 6 3 2 8 8 O 1.42904 * 109.47354 * 305.08393 * 6 3 2 9 9 C 1.42894 * 114.00045 * 149.99997 * 8 6 3 10 10 C 1.50702 * 109.47147 * 185.08334 * 6 3 2 11 11 O 1.21276 * 120.00050 * 94.86228 * 10 6 3 12 12 N 1.34784 * 119.99685 * 274.85892 * 10 6 3 13 13 C 1.47078 * 120.88021 * 354.45194 * 12 10 6 14 14 C 1.53233 * 108.52210 * 231.16031 * 13 12 10 15 15 N 1.46900 * 109.34052 * 306.17628 * 14 13 12 16 16 C 1.46904 * 111.00056 * 187.25367 * 15 14 13 17 17 C 1.53946 * 113.73955 * 273.74158 * 16 15 14 18 18 N 1.47805 * 86.03684 * 222.08327 * 17 16 15 19 19 C 1.36941 * 134.45673 * 204.64686 * 18 17 16 20 20 H 1.08007 * 119.99797 * 179.86111 * 19 18 17 21 21 C 1.38803 * 120.00018 * 359.86366 * 19 18 17 22 22 N 1.31619 * 120.00421 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46999 * 89.99765 * 23 21 19 25 25 H 1.48499 * 109.47309 * 210.00116 * 23 21 19 26 26 H 1.48499 * 109.46950 * 330.00023 * 23 21 19 27 27 C 1.47581 * 91.05248 * 24.54795 * 18 17 16 28 28 C 1.46895 * 111.26889 * 63.10361 * 15 14 13 29 29 C 1.47073 * 120.87952 * 174.43316 * 12 10 6 30 30 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47347 * 300.00713 * 1 2 3 32 32 H 1.09003 * 109.46733 * 60.00267 * 1 2 3 33 33 H 1.08996 * 109.46957 * 239.99569 * 2 1 3 34 34 H 1.09003 * 109.46733 * 119.99733 * 2 1 3 35 35 H 1.08996 * 109.47160 * 295.04517 * 5 3 2 36 36 H 1.08998 * 109.46971 * 55.04843 * 5 3 2 37 37 H 1.08999 * 109.47037 * 175.04182 * 5 3 2 38 38 H 1.08997 * 109.47623 * 60.00056 * 9 8 6 39 39 H 1.09010 * 109.46816 * 179.97438 * 9 8 6 40 40 H 1.08993 * 109.47146 * 299.99562 * 9 8 6 41 41 H 1.09001 * 109.62337 * 111.45363 * 13 12 10 42 42 H 1.09001 * 109.63050 * 350.87862 * 13 12 10 43 43 H 1.09003 * 109.49488 * 186.21481 * 14 13 12 44 44 H 1.09001 * 109.49360 * 66.13454 * 14 13 12 45 45 H 1.08999 * 112.94391 * 45.32979 * 16 15 14 46 46 H 1.08998 * 113.77147 * 336.34831 * 17 16 15 47 47 H 1.08999 * 113.77094 * 107.74376 * 17 16 15 48 48 H 0.97000 * 120.00066 * 180.02562 * 22 21 19 49 49 H 1.09000 * 113.76984 * 221.15633 * 27 18 17 50 50 H 1.08994 * 113.76762 * 89.75452 * 27 18 17 51 51 H 1.08996 * 109.49390 * 56.85922 * 28 15 14 52 52 H 1.09008 * 109.49021 * 176.93269 * 28 15 14 53 53 H 1.09003 * 109.63112 * 9.12682 * 29 12 10 54 54 H 1.08997 * 109.62773 * 248.54979 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 1 4.0030 0.9848 -0.7602 8 8 3.9480 0.7029 1.2858 9 6 5.2219 0.0654 1.1735 10 6 4.0568 2.8632 0.2514 11 8 4.2528 3.3423 1.3481 12 7 4.2791 3.5998 -0.8553 13 6 4.1649 3.0031 -2.1947 14 6 5.4400 3.3249 -2.9813 15 7 5.6686 4.7759 -2.9650 16 6 6.7826 5.1433 -3.8494 17 6 8.1638 5.0561 -3.1752 18 7 8.4655 6.3298 -3.8618 19 6 9.6162 6.9521 -4.2665 20 1 9.5660 7.9086 -4.7656 21 6 10.8471 6.3535 -4.0355 22 7 10.9082 5.1876 -3.4279 23 14 12.4169 7.2027 -4.5870 24 1 12.9163 8.0771 -3.4956 25 1 13.4443 6.1811 -4.9122 26 1 12.1378 8.0250 -5.7916 27 6 7.0291 6.6603 -3.9381 28 6 5.8982 5.2638 -1.5986 29 6 4.6418 5.0216 -0.7554 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1403 1.6414 -2.1427 36 1 0.5563 2.0477 -1.4398 37 1 1.9210 3.1777 -1.2710 38 1 5.9915 0.8185 1.0044 39 1 5.4398 -0.4759 2.0943 40 1 5.2064 -0.6325 0.3364 41 1 3.3011 3.4230 -2.7101 42 1 4.0522 1.9226 -2.1059 43 1 5.3274 2.9859 -4.0111 44 1 6.2885 2.8178 -2.5218 45 1 6.7358 4.6488 -4.8196 46 1 8.1287 5.1401 -2.0890 47 1 8.7682 4.2166 -3.5188 48 1 11.7684 4.7695 -3.2661 49 1 6.7293 7.0991 -4.8897 50 1 6.6600 7.2165 -3.0765 51 1 6.7402 4.7299 -1.1584 52 1 6.1179 6.3312 -1.6257 53 1 4.8445 5.2756 0.2850 54 1 3.8238 5.6355 -1.1324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281589075.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:21 Heat of formation + Delta-G solvation = -26.546304 kcal Electronic energy + Delta-G solvation = -31733.972585 eV Core-core repulsion = 27707.577854 eV Total energy + Delta-G solvation = -4026.394731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.85828 -40.60870 -38.86066 -37.92623 -36.76795 -35.18980 -33.80281 -32.57535 -31.13235 -29.80189 -28.83038 -27.79885 -26.67621 -26.58278 -25.52438 -24.51118 -24.19398 -22.52093 -21.31525 -20.45191 -19.75551 -18.77896 -18.71081 -17.84283 -17.17001 -17.03122 -16.91243 -16.63329 -16.17099 -15.91646 -15.71451 -15.63449 -15.47645 -15.33104 -14.60577 -14.55752 -14.36332 -13.91604 -13.83846 -13.61629 -13.47429 -13.40133 -13.23438 -13.19186 -12.89313 -12.82497 -12.63887 -12.59115 -12.39717 -12.30255 -12.13254 -12.01372 -11.90297 -11.86013 -11.75538 -11.54123 -11.44930 -11.40789 -11.30439 -10.87913 -10.29201 -9.82883 -9.27221 -8.88969 -7.94018 -5.28216 1.42169 1.44239 1.45143 1.53049 1.80610 2.42305 2.68367 2.81528 3.25948 3.33714 3.46761 3.67529 3.76991 3.82338 3.90079 3.99703 4.06304 4.16008 4.20521 4.23440 4.35176 4.38243 4.43696 4.44841 4.51391 4.57987 4.60801 4.65062 4.70485 4.74203 4.77649 4.82338 4.83014 4.86280 4.91410 4.96696 5.07223 5.10639 5.18826 5.19505 5.20528 5.31919 5.33253 5.41090 5.45891 5.46598 5.60074 5.87669 5.94097 6.01504 6.14223 6.36341 6.87377 7.06803 7.57040 8.52214 9.22155 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002483 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.848839 B =11273.384194 C =11771.608335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.076 4.076 4 H 0.058 0.942 5 C -0.159 4.159 6 C 0.080 3.920 7 H 0.109 0.891 8 O -0.378 6.378 9 C 0.023 3.977 10 C 0.488 3.512 11 O -0.581 6.581 12 N -0.605 5.605 13 C 0.110 3.890 14 C 0.033 3.967 15 N -0.512 5.512 16 C 0.069 3.931 17 C 0.132 3.868 18 N -0.641 5.641 19 C -0.231 4.231 20 H 0.086 0.914 21 C -0.071 4.071 22 N -0.957 5.957 23 Si 0.980 3.020 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.264 1.264 27 C 0.127 3.873 28 C 0.046 3.954 29 C 0.124 3.876 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.019 0.981 45 H 0.112 0.888 46 H 0.013 0.987 47 H 0.032 0.968 48 H 0.247 0.753 49 H 0.062 0.938 50 H 0.046 0.954 51 H 0.014 0.986 52 H 0.082 0.918 53 H 0.073 0.927 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.990 -12.691 1.643 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.095 4.095 4 H 0.077 0.923 5 C -0.216 4.216 6 C 0.018 3.982 7 H 0.126 0.874 8 O -0.295 6.295 9 C -0.073 4.073 10 C 0.277 3.723 11 O -0.460 6.460 12 N -0.340 5.340 13 C -0.011 4.011 14 C -0.096 4.096 15 N -0.235 5.235 16 C -0.040 4.040 17 C 0.005 3.995 18 N -0.368 5.368 19 C -0.360 4.360 20 H 0.104 0.896 21 C -0.263 4.263 22 N -0.606 5.606 23 Si 0.808 3.192 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.188 1.188 27 C 0.002 3.998 28 C -0.082 4.082 29 C 0.001 3.999 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.037 0.963 45 H 0.130 0.870 46 H 0.030 0.970 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.032 0.968 52 H 0.100 0.900 53 H 0.091 0.909 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.122 -12.198 2.151 26.230 hybrid contribution 2.784 0.401 0.582 2.872 sum -20.338 -11.796 2.733 23.669 Atomic orbital electron populations 1.21817 0.94823 1.02187 1.02064 1.21458 0.96546 0.93956 1.02843 1.21162 0.89208 0.99146 1.00015 0.92335 1.22262 1.03591 1.00243 0.95499 1.22433 0.98239 0.87098 0.90379 0.87353 1.87964 1.36656 1.66334 1.38558 1.23028 0.83686 0.96314 1.04313 1.21988 0.76828 0.89876 0.83611 1.90667 1.53412 1.73755 1.28157 1.48387 1.67806 1.10840 1.06951 1.22488 0.98324 0.99778 0.80528 1.22659 0.96931 0.87437 1.02525 1.62078 1.40004 1.13799 1.07651 1.23843 0.86886 0.96648 0.96672 1.22844 0.93302 0.89464 0.93864 1.46252 1.01534 1.22017 1.67019 1.19442 0.84017 1.02141 1.30372 0.89618 1.25663 1.00729 0.98159 1.01790 1.70028 1.24015 1.18099 1.48444 0.85059 0.78903 0.77154 0.78133 1.21636 1.22042 1.18836 1.22804 0.82700 0.94823 0.99447 1.22435 0.95871 1.00934 0.89004 1.21628 0.96781 0.81689 0.99812 0.91948 0.93653 0.91323 0.90219 0.92264 0.89618 0.90013 0.92776 0.95941 0.88058 0.90990 0.87329 0.86903 0.86848 0.96281 0.86965 0.96986 0.94977 0.94436 0.92014 0.93629 0.96787 0.90001 0.90859 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.33 5.29 30.60 0.16 -1.16 16 3 C -0.08 -1.17 2.15 -10.80 -0.02 -1.19 16 4 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.16 -1.64 7.18 71.98 0.52 -1.12 16 6 C 0.08 1.56 1.74 29.85 0.05 1.61 16 7 H 0.11 1.50 5.64 -2.39 -0.01 1.49 16 8 O -0.38 -8.93 9.03 -131.27 -1.19 -10.12 16 9 C 0.02 0.43 10.81 113.37 1.23 1.65 16 10 C 0.49 13.16 6.39 87.66 0.56 13.72 16 11 O -0.58 -21.58 16.13 14.69 0.24 -21.35 16 12 N -0.61 -13.94 2.43 -817.97 -1.99 -15.93 16 13 C 0.11 1.72 4.22 86.35 0.36 2.09 16 14 C 0.03 0.71 5.61 86.38 0.48 1.19 16 15 N -0.51 -14.08 4.76 -876.04 -4.17 -18.24 16 16 C 0.07 2.42 4.03 46.67 0.19 2.60 16 17 C 0.13 6.31 6.81 86.44 0.59 6.90 16 18 N -0.64 -33.06 3.70 -716.73 -2.65 -35.71 16 19 C -0.23 -13.10 10.70 84.03 0.90 -12.20 16 20 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 22 N -0.96 -58.95 11.39 21.65 0.25 -58.70 16 23 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.13 4.98 8.42 86.48 0.73 5.71 16 28 C 0.05 1.41 4.47 86.38 0.39 1.80 16 29 C 0.12 3.21 6.61 86.35 0.57 3.78 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.54 6.46 -2.39 -0.02 0.52 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.90 7.39 -2.39 -0.02 0.88 16 35 H 0.09 0.51 6.42 -2.39 -0.02 0.50 16 36 H 0.08 0.66 6.35 -2.39 -0.02 0.65 16 37 H 0.05 0.71 5.84 -2.39 -0.01 0.70 16 38 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 41 H 0.11 1.28 6.97 -2.39 -0.02 1.26 16 42 H 0.11 1.15 4.34 -2.39 -0.01 1.14 16 43 H 0.11 1.92 8.04 -2.39 -0.02 1.90 16 44 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.11 3.73 8.04 -2.39 -0.02 3.71 16 46 H 0.01 0.63 5.65 -2.39 -0.01 0.62 16 47 H 0.03 1.74 7.16 -2.39 -0.02 1.72 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.05 1.74 6.22 -2.39 -0.01 1.72 16 51 H 0.01 0.52 6.45 -2.39 -0.02 0.50 16 52 H 0.08 2.65 6.06 -2.38 -0.01 2.63 16 53 H 0.07 2.21 7.04 -2.39 -0.02 2.19 16 54 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -77.68 399.51 1.26 -76.41 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.88 Total: 14.40 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.87 Total: 20.92 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.57 Total: -128.59 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.95 Total: -31.47 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.68 1.26 -76.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281589075.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.864 kcal (2) G-P(sol) polarization free energy of solvation -77.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds