Wall clock time and date at job start Tue Mar 31 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47451 * 2 1 4 4 H 1.09002 * 109.46716 * 304.99789 * 3 2 1 5 5 C 1.52992 * 109.46961 * 64.99418 * 3 2 1 6 6 C 1.52997 * 109.47317 * 184.99880 * 3 2 1 7 7 H 1.09002 * 109.47153 * 299.99641 * 6 3 2 8 8 C 1.53002 * 109.46817 * 179.97438 * 6 3 2 9 9 C 1.50701 * 109.47212 * 59.99639 * 6 3 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 6 3 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 6 3 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 6 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.84890 * 43.80507 * 13 12 11 15 15 C 1.53782 * 113.61732 * 175.00412 * 13 12 11 16 16 C 1.53778 * 87.08476 * 139.98256 * 15 13 12 17 17 H 1.09002 * 113.61341 * 219.93947 * 16 15 13 18 18 N 1.46898 * 113.61718 * 89.11562 * 16 15 13 19 19 C 1.46898 * 111.00092 * 155.00419 * 18 16 15 20 20 C 1.50696 * 109.47248 * 180.02562 * 19 18 16 21 21 O 1.21296 * 119.99835 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00170 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99958 * 179.97438 * 22 20 19 24 24 H 1.07996 * 120.00306 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99618 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00316 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99784 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46878 * 89.99920 * 27 25 23 29 29 H 1.48490 * 109.47248 * 210.00299 * 27 25 23 30 30 H 1.48503 * 109.47249 * 330.00484 * 27 25 23 31 31 C 1.53787 * 113.61418 * 272.50075 * 13 12 11 32 32 H 1.08996 * 109.47443 * 300.00108 * 1 2 3 33 33 H 1.09000 * 109.46961 * 60.00367 * 1 2 3 34 34 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47348 * 239.99118 * 2 1 3 36 36 H 1.09000 * 109.46961 * 119.99633 * 2 1 3 37 37 H 1.09001 * 109.47066 * 180.02562 * 5 3 2 38 38 H 1.08996 * 109.47747 * 300.00196 * 5 3 2 39 39 H 1.09002 * 109.47103 * 60.00608 * 5 3 2 40 40 H 1.09000 * 109.46986 * 179.97438 * 8 6 3 41 41 H 1.09002 * 109.47075 * 299.99262 * 8 6 3 42 42 H 1.08996 * 109.47407 * 60.00219 * 8 6 3 43 43 H 0.96995 * 120.00011 * 0.02562 * 11 9 6 44 44 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 45 45 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 46 46 H 1.09010 * 113.61095 * 254.53119 * 15 13 12 47 47 H 1.08996 * 113.61512 * 25.42626 * 15 13 12 48 48 H 1.00894 * 111.00157 * 31.04719 * 18 16 15 49 49 H 1.09001 * 109.46882 * 299.99733 * 19 18 16 50 50 H 1.08996 * 109.47669 * 59.99679 * 19 18 16 51 51 H 0.97005 * 119.99763 * 359.97438 * 22 20 19 52 52 H 0.97004 * 119.99829 * 179.97438 * 26 25 23 53 53 H 1.08992 * 113.61461 * 334.56265 * 31 13 12 54 54 H 1.08996 * 113.61698 * 105.47303 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1265 1.3072 6 6 3.5649 1.4443 -0.1257 7 1 3.9995 0.9053 0.7162 8 6 4.0748 2.8868 -0.1263 9 6 3.9636 0.7704 -1.4133 10 8 3.1120 0.3323 -2.1574 11 7 5.2665 0.6555 -1.7384 12 6 5.6541 0.0010 -2.9904 13 6 7.1789 0.0027 -3.1161 14 1 7.6805 -0.2652 -2.1861 15 6 7.6970 -0.7704 -4.3403 16 6 8.7313 0.3541 -4.5144 17 1 8.8993 0.6357 -5.5540 18 7 9.9806 0.1241 -3.7767 19 6 11.0996 0.8443 -4.3989 20 6 12.3612 0.5844 -3.6167 21 8 12.3311 -0.1302 -2.6370 22 7 13.5231 1.1459 -4.0058 23 6 14.6707 0.9098 -3.2939 24 1 14.6437 0.2743 -2.4211 25 6 15.8686 1.4883 -3.6954 26 7 15.9016 2.2612 -4.7576 27 14 17.4322 1.1672 -2.7250 28 1 18.1159 -0.0328 -3.2708 29 1 18.3329 2.3427 -2.8344 30 1 17.0909 0.9363 -1.2983 31 6 7.7410 1.2718 -3.7780 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.9982 3.1543 1.3071 38 1 0.5490 2.1253 1.3968 39 1 2.0698 1.5875 2.1491 40 1 5.1611 2.8881 -0.2154 41 1 3.6402 3.4254 -0.9685 42 1 3.7864 3.3745 0.8048 43 1 5.9476 1.0062 -1.1435 44 1 5.2910 -1.0268 -2.9907 45 1 5.2192 0.5401 -3.8321 46 1 8.1390 -1.7356 -4.0922 47 1 6.9762 -0.8310 -5.1556 48 1 10.1812 -0.8620 -3.7038 49 1 11.2301 0.4972 -5.4239 50 1 10.8872 1.9133 -4.4016 51 1 13.5473 1.7170 -4.7895 52 1 16.7378 2.6653 -5.0376 53 1 7.0323 1.7697 -4.4397 54 1 8.2186 1.9555 -3.0762 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316640531.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:43 Heat of formation + Delta-G solvation = -100.066565 kcal Electronic energy + Delta-G solvation = -29010.345865 eV Core-core repulsion = 24980.763057 eV Total energy + Delta-G solvation = -4029.582808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.27165 -40.48605 -39.76006 -37.58314 -36.16710 -35.75984 -34.44239 -33.27922 -33.12148 -29.85029 -28.93645 -27.72425 -26.67797 -26.59032 -25.63134 -23.84903 -22.92141 -21.54131 -21.10067 -20.67088 -19.91189 -19.84781 -18.20055 -17.70458 -17.23722 -16.85405 -16.49809 -16.35960 -16.25807 -16.03245 -15.80638 -15.54326 -15.18339 -15.03759 -14.88945 -14.45535 -14.25404 -13.99680 -13.69457 -13.55356 -13.46641 -13.32959 -13.20763 -13.12067 -12.99731 -12.84920 -12.56803 -12.45712 -12.42311 -12.40020 -12.34755 -12.12151 -11.74717 -11.62867 -11.50757 -11.45241 -11.42645 -11.26673 -11.10971 -10.44649 -10.30266 -10.01483 -9.97244 -9.28921 -8.46609 -5.95437 1.38292 1.42323 1.54957 1.69614 2.05392 2.28221 2.29202 2.89501 3.20834 3.47977 3.63626 3.66173 3.72245 3.88910 3.89719 3.94022 4.00960 4.22913 4.29651 4.41144 4.42486 4.45120 4.46939 4.56757 4.59369 4.64230 4.65766 4.73687 4.76355 4.79388 4.86031 4.88951 4.95347 4.97075 5.02886 5.11395 5.16186 5.20343 5.21895 5.30164 5.33682 5.37144 5.40584 5.42873 5.52794 5.59700 5.68837 5.93420 6.15952 6.43714 6.60143 6.60734 7.12630 7.31598 7.56365 8.11449 8.70692 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.001560 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.450662 B =17941.735558 C =18626.787948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.069 4.069 4 H 0.057 0.943 5 C -0.147 4.147 6 C -0.104 4.104 7 H 0.111 0.889 8 C -0.144 4.144 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.720 5.720 12 C 0.135 3.865 13 C -0.103 4.103 14 H 0.092 0.908 15 C -0.126 4.126 16 C 0.053 3.947 17 H 0.068 0.932 18 N -0.661 5.661 19 C 0.067 3.933 20 C 0.438 3.562 21 O -0.623 6.623 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.079 0.921 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.271 1.271 29 H -0.271 1.271 30 H -0.273 1.273 31 C -0.120 4.120 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.411 0.589 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.346 0.654 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.095 0.905 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.998 0.965 5.430 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.088 4.088 4 H 0.076 0.924 5 C -0.204 4.204 6 C -0.125 4.125 7 H 0.129 0.871 8 C -0.201 4.201 9 C 0.298 3.702 10 O -0.456 6.456 11 N -0.372 5.372 12 C 0.012 3.988 13 C -0.122 4.122 14 H 0.110 0.890 15 C -0.165 4.165 16 C -0.056 4.056 17 H 0.086 0.914 18 N -0.294 5.294 19 C -0.065 4.065 20 C 0.225 3.775 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.097 0.903 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.198 1.198 31 C -0.159 4.159 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.247 0.753 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.123 0.877 48 H 0.165 0.835 49 H 0.083 0.917 50 H 0.119 0.881 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.113 0.887 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.566 0.774 5.903 28.202 hybrid contribution 1.519 -0.325 -0.737 1.719 sum -26.048 0.450 5.166 26.559 Atomic orbital electron populations 1.21746 0.95559 1.01410 1.01659 1.21788 0.96502 0.96722 1.02005 1.20910 0.92411 0.96547 0.98885 0.92407 1.21933 1.01831 1.00787 0.95846 1.21431 0.97934 0.98364 0.94816 0.87127 1.21845 1.01597 0.93121 1.03537 1.21187 0.82078 0.78490 0.88401 1.90623 1.50754 1.50472 1.53752 1.46069 1.07582 1.59923 1.23606 1.21311 0.94170 0.97148 0.86217 1.22563 0.92787 0.97895 0.98973 0.89022 1.23190 0.97873 0.97166 0.98258 1.22654 0.88609 0.98592 0.95787 0.91387 1.59940 1.01129 1.15791 1.52588 1.21561 0.88378 1.01092 0.95472 1.20884 0.85676 0.83658 0.87252 1.90489 1.86651 1.43030 1.30794 1.41937 1.06911 1.44409 1.27772 1.19677 0.86686 1.29556 1.10562 0.90292 1.26031 1.01933 0.95673 0.97542 1.69672 1.29212 1.32044 1.25150 0.84931 0.77070 0.78140 0.78214 1.19641 1.19559 1.19788 1.23091 0.97358 0.95993 0.99422 0.91627 0.93692 0.93059 0.91965 0.92268 0.91436 0.92016 0.91933 0.91299 0.92972 0.89503 0.75284 0.92438 0.91836 0.91091 0.87654 0.83452 0.91653 0.88064 0.76991 0.91305 0.88691 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 71.98 0.70 -1.48 16 2 C -0.13 -2.26 5.14 30.59 0.16 -2.10 16 3 C -0.07 -1.00 1.61 -10.80 -0.02 -1.02 16 4 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 5 C -0.15 -1.46 8.60 71.98 0.62 -0.84 16 6 C -0.10 -1.40 2.32 -11.54 -0.03 -1.43 16 7 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 8 C -0.14 -1.48 8.74 71.98 0.63 -0.85 16 9 C 0.51 9.90 6.83 87.66 0.60 10.50 16 10 O -0.58 -15.49 13.67 -3.03 -0.04 -15.53 16 11 N -0.72 -11.83 5.45 -463.06 -2.52 -14.36 16 12 C 0.14 2.37 5.51 86.38 0.48 2.84 16 13 C -0.10 -1.81 3.67 -10.27 -0.04 -1.85 16 14 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.13 -2.18 7.32 31.12 0.23 -1.95 16 16 C 0.05 1.13 4.22 45.44 0.19 1.32 16 17 H 0.07 1.35 7.87 -2.39 -0.02 1.33 16 18 N -0.66 -19.55 6.08 -492.86 -2.99 -22.54 16 19 C 0.07 2.24 6.01 85.56 0.51 2.75 16 20 C 0.44 20.48 7.82 87.66 0.69 21.17 16 21 O -0.62 -34.01 15.78 -3.08 -0.05 -34.05 16 22 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 23 C -0.34 -18.93 9.68 84.04 0.81 -18.11 16 24 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 25 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 26 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 27 Si 0.99 42.55 29.55 68.60 2.03 44.57 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 30 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 31 C -0.12 -2.25 7.43 31.13 0.23 -2.02 16 32 H 0.06 0.78 6.56 -2.39 -0.02 0.76 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.43 5.42 -2.39 -0.01 1.42 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.55 6.43 -2.39 -0.02 0.53 16 38 H 0.06 0.59 6.56 -2.39 -0.02 0.58 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.62 7.56 -2.39 -0.02 0.60 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.64 6.43 -2.39 -0.02 0.63 16 43 H 0.41 5.29 7.89 -92.71 -0.73 4.56 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.17 7.84 -2.39 -0.02 1.16 16 46 H 0.07 1.29 7.91 -2.38 -0.02 1.27 16 47 H 0.11 1.46 8.10 -2.39 -0.02 1.44 16 48 H 0.35 10.84 8.08 -89.70 -0.73 10.12 16 49 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 50 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 51 H 0.40 19.11 7.90 -92.70 -0.73 18.38 16 52 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 53 H 0.09 1.50 7.90 -2.39 -0.02 1.48 16 54 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.77 425.82 0.02 -69.74 By element: Atomic # 1 Polarization: 46.39 SS G_CDS: -1.28 Total: 45.11 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.22 Total: 6.76 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.86 Total: -116.60 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.09 Total: -49.59 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.77 0.02 -69.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316640531.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.322 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds