Wall clock time and date at job start Tue Mar 31 2020 22:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47408 * 2 1 4 4 H 1.08997 * 109.46795 * 52.69772 * 3 2 1 5 5 C 1.52996 * 109.47174 * 292.69501 * 3 2 1 6 6 C 1.52999 * 109.47135 * 172.69599 * 3 2 1 7 7 H 1.08997 * 109.47192 * 173.46350 * 6 3 2 8 8 N 1.46499 * 109.47141 * 53.45939 * 6 3 2 9 9 C 1.34780 * 119.99535 * 85.00254 * 8 6 3 10 10 C 1.50704 * 119.99833 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00256 * 359.97438 * 9 8 6 12 12 C 1.50699 * 109.47081 * 293.46386 * 6 3 2 13 13 O 1.21283 * 120.00411 * 106.26982 * 12 6 3 14 14 N 1.34780 * 119.99901 * 286.26851 * 12 6 3 15 15 C 1.46495 * 120.00029 * 184.75675 * 14 12 6 16 16 C 1.53007 * 109.47343 * 184.48515 * 15 14 12 17 17 H 1.09004 * 109.58121 * 301.41826 * 16 15 14 18 18 C 1.53194 * 109.58535 * 180.99555 * 16 15 14 19 19 C 1.53037 * 109.30798 * 185.57729 * 18 16 15 20 20 C 1.53042 * 109.54237 * 61.36472 * 19 18 16 21 21 C 1.53194 * 109.31134 * 298.63342 * 20 19 18 22 22 N 1.46916 * 109.58494 * 61.70103 * 16 15 14 23 23 C 1.36941 * 120.63441 * 353.42193 * 22 16 15 24 24 H 1.07992 * 119.99840 * 314.77791 * 23 22 16 25 25 C 1.38816 * 120.00065 * 134.77232 * 23 22 16 26 26 N 1.31616 * 119.99856 * 161.44582 * 25 23 22 27 27 Si 1.86805 * 119.99953 * 341.45001 * 25 23 22 28 28 H 1.48494 * 109.47430 * 87.76161 * 27 25 23 29 29 H 1.48501 * 109.46756 * 207.76446 * 27 25 23 30 30 H 1.48508 * 109.46955 * 327.75768 * 27 25 23 31 31 H 1.09002 * 109.46683 * 305.98820 * 1 2 3 32 32 H 1.09000 * 109.46546 * 65.98216 * 1 2 3 33 33 H 1.08994 * 109.47275 * 185.98011 * 1 2 3 34 34 H 1.09004 * 109.47024 * 239.99628 * 2 1 3 35 35 H 1.09003 * 109.47039 * 120.00597 * 2 1 3 36 36 H 1.09004 * 109.47287 * 59.99776 * 5 3 2 37 37 H 1.09005 * 109.47205 * 180.02562 * 5 3 2 38 38 H 1.08997 * 109.47481 * 299.99851 * 5 3 2 39 39 H 0.96992 * 120.00588 * 264.99781 * 8 6 3 40 40 H 1.08994 * 109.46838 * 359.97438 * 10 9 8 41 41 H 1.08994 * 109.47044 * 119.99911 * 10 9 8 42 42 H 1.09003 * 109.47060 * 240.00024 * 10 9 8 43 43 H 0.96998 * 120.00020 * 4.75600 * 14 12 6 44 44 H 1.09005 * 109.47572 * 64.48613 * 15 14 12 45 45 H 1.09005 * 109.47386 * 304.48528 * 15 14 12 46 46 H 1.08998 * 109.49751 * 305.52047 * 18 16 15 47 47 H 1.08994 * 109.49675 * 65.62487 * 18 16 15 48 48 H 1.09005 * 109.46121 * 301.34374 * 19 18 16 49 49 H 1.09003 * 109.44781 * 181.37879 * 19 18 16 50 50 H 1.08993 * 109.50096 * 178.68572 * 20 19 18 51 51 H 1.09000 * 109.49488 * 58.58091 * 20 19 18 52 52 H 1.09003 * 109.58768 * 294.84579 * 21 20 19 53 53 H 1.08994 * 109.70663 * 174.48505 * 21 20 19 54 54 H 0.97004 * 119.99793 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5741 1.9926 0.8174 5 6 1.6854 2.1088 -1.3308 6 6 3.5591 1.4463 0.1834 7 1 3.9365 2.4623 0.0676 8 7 4.1748 0.5789 -0.8239 9 6 4.4514 1.0624 -2.0512 10 6 5.0853 0.1703 -3.0873 11 8 4.1902 2.2154 -2.3218 12 6 3.9001 0.9376 1.5603 13 8 4.3694 -0.1723 1.6978 14 7 3.6836 1.7160 2.6391 15 6 4.1105 1.2645 3.9657 16 6 3.6502 2.2730 5.0203 17 1 4.0702 3.2535 4.7960 18 6 4.1167 1.8160 6.4061 19 6 3.5366 2.7514 7.4693 20 6 2.0081 2.6871 7.4287 21 6 1.5177 3.1540 6.0545 22 7 2.1832 2.3533 5.0178 23 6 1.4499 1.6939 4.0676 24 1 1.7463 1.7381 3.0301 25 6 0.3258 0.9686 4.4381 26 7 -0.5756 0.6452 3.5353 27 14 0.0925 0.4518 6.2180 28 1 -0.6071 1.5316 6.9594 29 1 -0.7191 -0.7907 6.2703 30 1 1.4183 0.2034 6.8392 31 1 -0.3633 0.6039 0.8316 32 1 -0.3632 0.4183 -0.9387 33 1 -0.3633 -1.0220 0.1071 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.6033 2.1061 -1.4615 37 1 2.0492 3.1364 -1.3310 38 1 2.1515 1.5587 -2.1482 39 1 4.3834 -0.3434 -0.6077 40 1 5.2445 -0.8215 -2.6643 41 1 4.4277 0.0951 -3.9533 42 1 6.0425 0.5923 -3.3935 43 1 3.2452 2.5752 2.5370 44 1 5.1973 1.1841 3.9900 45 1 3.6693 0.2905 4.1775 46 1 3.7711 0.7986 6.5891 47 1 5.2054 1.8446 6.4511 48 1 3.8625 3.7726 7.2713 49 1 3.8870 2.4429 8.4543 50 1 1.5960 3.3358 8.2016 51 1 1.6824 1.6615 7.6020 52 1 1.7638 4.2070 5.9171 53 1 0.4385 3.0187 5.9840 54 1 -1.3610 0.1380 3.7941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317180950.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:43 Heat of formation + Delta-G solvation = -78.104015 kcal Electronic energy + Delta-G solvation = -32892.140036 eV Core-core repulsion = 28863.509595 eV Total energy + Delta-G solvation = -4028.630441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69933 -40.29672 -39.40271 -37.40775 -35.90513 -34.70937 -34.61168 -32.61597 -32.40460 -31.48309 -29.98675 -28.59439 -27.31048 -25.99395 -24.53711 -24.04502 -22.40317 -22.03352 -21.59485 -20.65235 -20.36087 -19.23154 -18.29757 -17.66462 -17.19348 -16.96198 -16.86011 -16.35409 -16.13491 -15.75589 -15.45073 -15.35839 -15.28205 -14.95264 -14.78972 -14.59946 -14.41795 -14.23096 -13.69239 -13.53353 -13.44363 -13.28705 -13.25665 -13.11539 -13.00954 -12.94948 -12.81572 -12.65152 -12.36670 -12.34694 -12.03586 -11.88144 -11.83408 -11.55364 -11.49314 -11.41561 -11.19310 -11.01986 -10.86513 -10.76741 -10.47858 -10.01940 -9.75552 -8.43458 -7.99170 -5.47825 1.33328 1.43950 1.49046 1.60745 1.72617 1.99487 2.51841 2.62896 3.23578 3.35876 3.67569 3.80822 3.92223 3.94007 4.00818 4.10147 4.16933 4.18972 4.35676 4.41733 4.47331 4.56288 4.56912 4.62482 4.67903 4.71227 4.73156 4.75006 4.80011 4.82927 4.92989 5.02594 5.07477 5.11229 5.14141 5.14688 5.16027 5.19618 5.25186 5.31886 5.31994 5.34159 5.43441 5.51838 5.56644 5.65734 5.66944 6.10328 6.48174 6.60572 6.61049 7.14013 7.25547 7.30079 7.75437 8.26118 9.11848 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.004082 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.054473 B = 6857.357246 C = 7943.228966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.122 4.122 6 C 0.141 3.859 7 H 0.108 0.892 8 N -0.704 5.704 9 C 0.507 3.493 10 C -0.163 4.163 11 O -0.580 6.580 12 C 0.512 3.488 13 O -0.578 6.578 14 N -0.690 5.690 15 C 0.142 3.858 16 C 0.160 3.840 17 H 0.065 0.935 18 C -0.131 4.131 19 C -0.099 4.099 20 C -0.162 4.162 21 C 0.135 3.865 22 N -0.615 5.615 23 C -0.251 4.251 24 H 0.091 0.909 25 C -0.004 4.004 26 N -0.924 5.924 27 Si 0.913 3.087 28 H -0.284 1.284 29 H -0.334 1.334 30 H -0.256 1.256 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.413 0.587 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.410 0.590 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.040 0.960 52 H 0.048 0.952 53 H 0.037 0.963 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 2.490 -5.258 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.106 4.106 4 H 0.088 0.912 5 C -0.179 4.179 6 C 0.032 3.968 7 H 0.126 0.874 8 N -0.357 5.357 9 C 0.296 3.704 10 C -0.222 4.222 11 O -0.460 6.460 12 C 0.298 3.702 13 O -0.459 6.459 14 N -0.340 5.340 15 C 0.018 3.982 16 C 0.054 3.946 17 H 0.082 0.918 18 C -0.170 4.170 19 C -0.137 4.137 20 C -0.201 4.201 21 C 0.011 3.989 22 N -0.341 5.341 23 C -0.381 4.381 24 H 0.108 0.892 25 C -0.202 4.202 26 N -0.567 5.567 27 Si 0.746 3.254 28 H -0.211 1.211 29 H -0.265 1.265 30 H -0.181 1.181 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.250 0.750 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.247 0.753 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.058 0.942 52 H 0.066 0.934 53 H 0.055 0.945 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.353 2.468 -5.371 12.800 hybrid contribution -1.241 -0.892 1.465 2.117 sum 10.112 1.576 -3.906 10.954 Atomic orbital electron populations 1.21670 0.95593 1.01021 1.01630 1.21258 0.96179 0.95445 1.00309 1.21402 0.92032 0.97502 0.99689 0.91243 1.21736 1.00663 1.00147 0.95352 1.20714 0.94567 0.96176 0.85341 0.87426 1.45916 1.62229 1.15778 1.11814 1.21506 0.77295 0.88616 0.82940 1.21869 1.03025 0.99861 0.97422 1.90707 1.54787 1.20317 1.80213 1.20656 0.77481 0.84997 0.87045 1.90607 1.47602 1.20661 1.87064 1.45921 1.59058 1.22455 1.06606 1.21251 0.97856 0.97828 0.81262 1.21085 0.84059 0.96460 0.92951 0.91780 1.21978 1.00810 0.98778 0.95477 1.21314 0.93555 1.00237 0.98552 1.22401 0.98320 1.00923 0.98414 1.21167 0.95554 0.94452 0.87770 1.44608 1.01145 1.55652 1.32714 1.19242 1.05859 1.22927 0.90048 0.89196 1.26169 0.98226 0.97846 0.97981 1.69880 1.10369 1.42183 1.34307 0.86537 0.77187 0.75986 0.85677 1.21067 1.26487 1.18096 0.92963 0.92136 0.94133 0.91432 0.94998 0.92735 0.92865 0.92485 0.74951 0.88630 0.87611 0.87540 0.75272 0.90469 0.94327 0.94450 0.89447 0.90414 0.91254 0.90759 0.94157 0.93356 0.94482 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.57 71.98 0.69 -4.51 16 2 C -0.09 -3.28 4.94 30.60 0.15 -3.13 16 3 C -0.09 -2.83 2.17 -10.80 -0.02 -2.85 16 4 H 0.07 2.65 7.49 -2.39 -0.02 2.64 16 5 C -0.12 -3.65 7.62 71.98 0.55 -3.10 16 6 C 0.14 4.31 2.34 44.25 0.10 4.41 16 7 H 0.11 3.23 7.58 -2.39 -0.02 3.21 16 8 N -0.70 -18.29 4.10 -446.10 -1.83 -20.12 16 9 C 0.51 12.28 6.58 87.66 0.58 12.86 16 10 C -0.16 -2.33 10.39 71.24 0.74 -1.59 16 11 O -0.58 -18.01 14.24 -3.02 -0.04 -18.05 16 12 C 0.51 17.99 6.11 87.66 0.54 18.52 16 13 O -0.58 -23.04 15.69 -3.04 -0.05 -23.09 16 14 N -0.69 -23.75 3.39 -463.04 -1.57 -25.31 16 15 C 0.14 4.92 4.57 86.38 0.40 5.32 16 16 C 0.16 5.22 2.98 44.98 0.13 5.36 16 17 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 18 C -0.13 -3.82 5.37 30.67 0.16 -3.65 16 19 C -0.10 -2.65 5.88 30.62 0.18 -2.47 16 20 C -0.16 -5.38 5.55 30.67 0.17 -5.21 16 21 C 0.14 5.14 5.39 86.36 0.47 5.61 16 22 N -0.61 -24.91 2.43 -675.21 -1.64 -26.55 16 23 C -0.25 -12.19 8.07 84.03 0.68 -11.51 16 24 H 0.09 4.47 4.48 -2.91 -0.01 4.46 16 25 C 0.00 -0.24 5.19 84.86 0.44 0.20 16 26 N -0.92 -52.89 13.81 21.65 0.30 -52.60 16 27 Si 0.91 45.10 23.40 68.60 1.61 46.71 16 28 H -0.28 -13.60 6.73 99.48 0.67 -12.93 16 29 H -0.33 -17.73 7.11 99.48 0.71 -17.02 16 30 H -0.26 -12.15 5.84 99.48 0.58 -11.57 16 31 H 0.05 2.31 7.97 -2.39 -0.02 2.29 16 32 H 0.06 1.91 6.93 -2.39 -0.02 1.89 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 2.04 7.70 -2.38 -0.02 2.03 16 35 H 0.03 1.32 7.11 -2.39 -0.02 1.30 16 36 H 0.05 1.59 6.78 -2.39 -0.02 1.58 16 37 H 0.05 1.62 7.93 -2.38 -0.02 1.60 16 38 H 0.06 1.67 5.61 -2.39 -0.01 1.66 16 39 H 0.41 10.26 7.55 -92.71 -0.70 9.56 16 40 H 0.09 1.01 7.91 -2.39 -0.02 0.99 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.41 13.70 7.30 -92.71 -0.68 13.03 16 44 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.04 1.65 7.85 -2.38 -0.02 1.63 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.04 1.56 3.99 -2.39 -0.01 1.55 16 52 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.04 1.62 5.53 -2.39 -0.01 1.61 16 54 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -65.33 397.03 2.09 -63.23 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.63 Total: 41.53 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.95 Total: 14.24 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -4.74 Total: -124.57 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.09 Total: -41.14 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.61 Total: 46.71 kcal Total: -65.33 2.09 -63.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317180950.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.871 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds