Wall clock time and date at job start Tue Mar 31 2020 23:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46792 * 2 1 4 4 H 1.09008 * 109.47324 * 304.29637 * 3 2 1 5 5 C 1.52999 * 109.46705 * 184.30544 * 3 2 1 6 6 N 1.46497 * 109.47151 * 185.00160 * 5 3 2 7 7 C 1.34773 * 120.00247 * 180.27514 * 6 5 3 8 8 O 1.21284 * 120.00191 * 354.61966 * 7 6 5 9 9 C 1.50703 * 120.00426 * 174.62546 * 7 6 5 10 10 C 1.53006 * 110.42949 * 302.30297 * 9 7 6 11 11 C 1.53003 * 109.47045 * 304.86591 * 10 9 7 12 12 C 1.54879 * 110.49001 * 179.61883 * 9 7 6 13 13 C 1.54895 * 102.75071 * 279.26246 * 12 9 7 14 14 C 1.54265 * 104.18975 * 322.05676 * 13 12 9 15 15 C 1.53870 * 106.60221 * 23.61051 * 14 13 12 16 16 N 1.46893 * 109.47360 * 64.30101 * 3 2 1 17 17 C 1.46903 * 110.99826 * 64.77110 * 16 3 2 18 18 C 1.50705 * 109.47161 * 175.45560 * 17 16 3 19 19 O 1.21288 * 119.99895 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00104 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99838 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00407 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99561 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99648 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47196 * 60.00235 * 25 23 21 27 27 H 1.48500 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47350 * 299.99911 * 25 23 21 29 29 H 1.08998 * 109.47376 * 304.96384 * 1 2 3 30 30 H 1.09004 * 109.47361 * 64.96489 * 1 2 3 31 31 H 1.09003 * 109.47202 * 184.96181 * 1 2 3 32 32 H 1.08997 * 109.46944 * 240.00132 * 2 1 3 33 33 H 1.08997 * 109.46907 * 119.99581 * 2 1 3 34 34 H 1.08992 * 109.47797 * 64.99868 * 5 3 2 35 35 H 1.09005 * 109.47337 * 304.99770 * 5 3 2 36 36 H 0.96999 * 119.99883 * 359.97438 * 6 5 3 37 37 H 1.08995 * 109.47603 * 64.87061 * 10 9 7 38 38 H 1.09000 * 109.46879 * 184.87103 * 10 9 7 39 39 H 1.08998 * 109.47300 * 305.05633 * 11 10 9 40 40 H 1.09004 * 109.46787 * 65.04896 * 11 10 9 41 41 H 1.08997 * 109.47217 * 185.04981 * 11 10 9 42 42 H 1.08997 * 110.75805 * 37.57217 * 12 9 7 43 43 H 1.08999 * 110.75850 * 160.94582 * 12 9 7 44 44 H 1.08992 * 110.48866 * 203.38186 * 13 12 9 45 45 H 1.08993 * 110.48661 * 80.73131 * 13 12 9 46 46 H 1.09001 * 110.03334 * 264.32167 * 14 13 12 47 47 H 1.09009 * 110.03310 * 142.89265 * 14 13 12 48 48 H 1.09001 * 110.03530 * 240.71687 * 15 14 13 49 49 H 1.08998 * 110.03672 * 119.28376 * 15 14 13 50 50 H 1.00903 * 111.00100 * 188.71817 * 16 3 2 51 51 H 1.08998 * 109.47205 * 295.45310 * 17 16 3 52 52 H 1.08999 * 109.47152 * 55.45349 * 17 16 3 53 53 H 0.97007 * 119.99870 * 0.02562 * 20 18 17 54 54 H 0.97005 * 119.99952 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6151 1.9782 -0.8490 5 6 3.5661 1.4439 -0.1083 6 7 4.0630 2.8168 0.0116 7 6 5.3860 3.0633 -0.0601 8 8 6.1719 2.1419 -0.1259 9 6 5.8890 4.4839 -0.0586 10 6 5.2759 5.2689 -1.2200 11 6 5.5591 4.5391 -2.5346 12 6 7.4355 4.5116 -0.1385 13 6 7.8584 4.2455 1.3277 14 6 6.8195 5.0176 2.1669 15 6 5.5673 5.1692 1.2856 16 7 1.6369 2.1044 1.2479 17 6 2.2832 1.4775 2.4087 18 6 1.9354 2.2500 3.6552 19 8 1.2201 3.2268 3.5835 20 7 2.4193 1.8553 4.8495 21 6 2.1025 2.5576 5.9834 22 1 1.4649 3.4269 5.9198 23 6 2.6010 2.1503 7.2149 24 7 3.3756 1.0917 7.2926 25 14 2.1699 3.1078 8.7599 26 1 0.6972 3.1038 8.9499 27 1 2.8217 2.4730 9.9336 28 1 2.6478 4.5073 8.6245 29 1 -0.3634 0.5889 0.8422 30 1 -0.3634 0.4349 -0.9311 31 1 -0.3634 -1.0238 0.0889 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8623 1.0334 -1.0735 35 1 3.9876 0.8339 0.6907 36 1 3.4394 3.5489 0.1384 37 1 4.1988 5.3509 -1.0747 38 1 5.7145 6.2661 -1.2563 39 1 6.6322 4.3777 -2.6367 40 1 5.0455 3.5776 -2.5343 41 1 5.2013 5.1420 -3.3693 42 1 7.8025 3.7230 -0.7954 43 1 7.7878 5.4880 -0.4710 44 1 8.8607 4.6321 1.5117 45 1 7.8126 3.1796 1.5504 46 1 7.2100 5.9999 2.4330 47 1 6.5756 4.4555 3.0685 48 1 5.3501 6.2250 1.1238 49 1 4.7159 4.6807 1.7593 50 1 1.8359 3.0930 1.2135 51 1 1.9332 0.4501 2.5085 52 1 3.3641 1.4812 2.2687 53 1 2.9918 1.0742 4.9068 54 1 3.7233 0.8072 8.1524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318590660.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:44 Heat of formation + Delta-G solvation = -122.311159 kcal Electronic energy + Delta-G solvation = -31757.220772 eV Core-core repulsion = 27726.673366 eV Total energy + Delta-G solvation = -4030.547406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75103 -40.38509 -39.01958 -37.95938 -35.98507 -35.19455 -34.06441 -33.36036 -33.00366 -30.24739 -29.44304 -28.81498 -27.92385 -26.09080 -24.69579 -23.69399 -22.84039 -21.74707 -21.38880 -20.69309 -20.13681 -19.86549 -18.38617 -17.77713 -17.17385 -17.00103 -16.79809 -16.38798 -16.13323 -15.97931 -15.84820 -15.45310 -15.21069 -14.98578 -14.69195 -14.48315 -14.43478 -14.16039 -13.95828 -13.81764 -13.70585 -13.45171 -13.13998 -12.97733 -12.88657 -12.69107 -12.55984 -12.44244 -12.31970 -12.23353 -12.14492 -12.14134 -11.95603 -11.78057 -11.60241 -11.54111 -11.49958 -11.43143 -11.40035 -10.67625 -10.35987 -10.13100 -10.03414 -9.39943 -8.47533 -5.96659 1.38377 1.40229 1.51343 1.62781 2.02620 2.12348 2.27914 2.92539 3.19629 3.39770 3.47972 3.56521 3.63304 3.71208 3.96768 4.06336 4.16444 4.18251 4.27518 4.28921 4.34560 4.38024 4.44038 4.48524 4.54637 4.55802 4.67100 4.68703 4.69758 4.74110 4.85815 4.90782 4.94183 4.98713 5.00077 5.07427 5.10327 5.16335 5.19447 5.23989 5.26182 5.35836 5.38035 5.39225 5.40886 5.45947 5.58789 5.85366 6.05430 6.35220 6.45431 6.56973 7.10455 7.20505 7.53684 8.07648 8.69689 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008741 B = 0.003861 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.696976 B = 7250.217976 C = 9503.545044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.086 3.914 4 H 0.112 0.888 5 C 0.085 3.915 6 N -0.722 5.722 7 C 0.529 3.471 8 O -0.577 6.577 9 C -0.081 4.081 10 C -0.103 4.103 11 C -0.153 4.153 12 C -0.093 4.093 13 C -0.125 4.125 14 C -0.129 4.129 15 C -0.113 4.113 16 N -0.656 5.656 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.082 0.918 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.038 0.962 48 H 0.101 0.899 49 H 0.047 0.953 50 H 0.344 0.656 51 H 0.099 0.901 52 H 0.053 0.947 53 H 0.393 0.607 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 5.225 -19.801 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.024 4.024 4 H 0.130 0.870 5 C -0.041 4.041 6 N -0.375 5.375 7 C 0.317 3.683 8 O -0.456 6.456 9 C -0.084 4.084 10 C -0.141 4.141 11 C -0.210 4.210 12 C -0.131 4.131 13 C -0.163 4.163 14 C -0.166 4.166 15 C -0.150 4.150 16 N -0.289 5.289 17 C -0.069 4.069 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.100 0.900 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.241 0.759 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.119 0.881 49 H 0.065 0.935 50 H 0.164 0.836 51 H 0.117 0.883 52 H 0.070 0.930 53 H 0.226 0.774 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.412 4.745 -19.670 20.710 hybrid contribution 0.803 0.079 1.329 1.555 sum 5.215 4.825 -18.341 19.668 Atomic orbital electron populations 1.21601 0.94765 1.01276 1.02125 1.21526 0.97090 0.93904 1.02593 1.22035 0.90160 0.97698 0.92500 0.87005 1.22102 0.96581 0.83276 1.02093 1.45929 1.07509 1.09851 1.74179 1.20825 0.81865 0.91723 0.73903 1.90650 1.56216 1.47650 1.51120 1.21756 0.98073 0.90777 0.97774 1.21597 1.01286 0.99352 0.91830 1.21805 1.01754 0.99949 0.97529 1.22407 0.91621 1.02659 0.96405 1.22336 0.99312 0.99135 0.95496 1.22163 0.95572 1.01127 0.97767 1.22262 0.97699 1.02103 0.92978 1.60315 1.60659 1.07417 1.00476 1.21539 0.97405 0.99006 0.88925 1.20760 0.83896 0.87192 0.85463 1.90480 1.42157 1.30817 1.86912 1.41939 1.45081 1.28048 1.05905 1.19642 1.29997 1.10976 0.85606 0.90006 1.26058 0.95956 0.97443 1.01822 1.69681 1.33670 1.25276 1.27655 0.85001 0.78617 0.78163 0.76663 1.19545 1.19680 1.19511 0.93526 0.91912 0.92722 0.89496 0.92722 0.90394 0.93127 0.75913 0.90606 0.88539 0.92741 0.94418 0.90651 0.91857 0.88217 0.90083 0.94268 0.89624 0.94352 0.88055 0.93460 0.83638 0.88306 0.92967 0.77407 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.85 71.98 0.71 -2.16 16 2 C -0.11 -2.21 5.28 30.60 0.16 -2.05 16 3 C 0.09 1.78 2.71 44.92 0.12 1.90 16 4 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 5 C 0.09 1.94 4.49 86.38 0.39 2.33 16 6 N -0.72 -16.61 5.04 -463.07 -2.33 -18.94 16 7 C 0.53 14.04 4.94 87.66 0.43 14.47 16 8 O -0.58 -19.75 15.08 -3.04 -0.05 -19.80 16 9 C -0.08 -1.65 0.47 -51.85 -0.02 -1.68 16 10 C -0.10 -1.47 4.76 30.60 0.15 -1.33 16 11 C -0.15 -2.28 9.42 71.98 0.68 -1.60 16 12 C -0.09 -1.90 4.72 31.88 0.15 -1.75 16 13 C -0.13 -2.98 6.52 31.67 0.21 -2.77 16 14 C -0.13 -3.09 6.80 31.32 0.21 -2.88 16 15 C -0.11 -2.47 5.92 31.32 0.19 -2.28 16 16 N -0.66 -18.70 5.38 -495.57 -2.67 -21.36 16 17 C 0.06 2.20 5.41 85.56 0.46 2.66 16 18 C 0.44 20.76 7.81 87.66 0.68 21.44 16 19 O -0.62 -33.00 15.67 -3.05 -0.05 -33.05 16 20 N -0.57 -29.81 5.29 -306.99 -1.62 -31.43 16 21 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.75 13.05 21.67 0.28 -50.46 16 25 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 H 0.05 1.22 7.60 -2.39 -0.02 1.20 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.22 6.42 -2.39 -0.02 1.20 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.41 6.54 -2.38 -0.02 1.39 16 36 H 0.40 8.21 6.68 -92.71 -0.62 7.59 16 37 H 0.08 0.97 7.78 -2.39 -0.02 0.95 16 38 H 0.10 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.05 0.86 7.22 -2.39 -0.02 0.85 16 40 H 0.04 0.68 7.34 -2.38 -0.02 0.66 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.49 7.19 -2.39 -0.02 1.47 16 43 H 0.10 1.48 8.01 -2.39 -0.02 1.46 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 1.18 7.61 -2.39 -0.02 1.16 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.04 1.12 8.14 -2.38 -0.02 1.11 16 48 H 0.10 1.70 7.84 -2.39 -0.02 1.69 16 49 H 0.05 1.25 7.54 -2.39 -0.02 1.23 16 50 H 0.34 10.10 6.95 -89.69 -0.62 9.47 16 51 H 0.10 3.24 6.56 -2.39 -0.02 3.23 16 52 H 0.05 1.80 6.07 -2.39 -0.01 1.78 16 53 H 0.39 19.94 7.90 -92.70 -0.73 19.21 16 54 H 0.28 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -70.36 416.77 0.32 -70.04 By element: Atomic # 1 Polarization: 54.95 SS G_CDS: -1.06 Total: 53.89 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.80 Total: 5.94 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -6.34 Total: -122.20 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.09 Total: -52.85 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.36 0.32 -70.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318590660.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.274 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds