Wall clock time and date at job start Tue Mar 31 2020 23:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47357 * 2 1 4 4 H 1.09004 * 109.47293 * 305.63327 * 3 2 1 5 5 C 1.53001 * 109.47046 * 65.63184 * 3 2 1 6 6 N 1.46901 * 109.47267 * 185.63128 * 3 2 1 7 7 C 1.46901 * 111.00068 * 60.79249 * 6 3 2 8 8 C 1.46900 * 110.99692 * 184.74282 * 6 3 2 9 9 C 1.53008 * 109.46926 * 170.00247 * 8 6 3 10 10 N 1.46495 * 109.47178 * 179.97438 * 9 8 6 11 11 C 1.34774 * 119.99929 * 179.97438 * 10 9 8 12 12 O 1.21348 * 120.00289 * 0.02562 * 11 10 9 13 13 C 1.49458 * 119.99944 * 180.02562 * 11 10 9 14 14 O 1.21348 * 119.99865 * 6.02420 * 13 11 10 15 15 N 1.34775 * 120.00101 * 186.02449 * 13 11 10 16 16 C 1.46927 * 120.62957 * 175.74358 * 15 13 11 17 17 C 1.53194 * 108.88824 * 233.55930 * 16 15 13 18 18 C 1.53075 * 109.29883 * 305.57790 * 17 16 15 19 19 C 1.50698 * 109.44449 * 181.23862 * 18 17 16 20 20 H 1.07992 * 119.99872 * 239.79798 * 19 18 17 21 21 C 1.37881 * 119.99883 * 59.79458 * 19 18 17 22 22 N 1.31517 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99891 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47050 * 60.00422 * 23 21 19 25 25 H 1.48501 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47377 * 300.00518 * 23 21 19 27 27 C 1.53040 * 109.65529 * 61.15590 * 18 17 16 28 28 C 1.46927 * 120.62685 * 355.76751 * 15 13 11 29 29 H 1.08999 * 109.46551 * 304.89561 * 1 2 3 30 30 H 1.09001 * 109.47136 * 64.89700 * 1 2 3 31 31 H 1.09002 * 109.46958 * 184.89843 * 1 2 3 32 32 H 1.09008 * 109.47062 * 240.00092 * 2 1 3 33 33 H 1.09006 * 109.47401 * 120.00220 * 2 1 3 34 34 H 1.09002 * 109.46972 * 300.00289 * 5 3 2 35 35 H 1.08993 * 109.47258 * 60.00300 * 5 3 2 36 36 H 1.09004 * 109.47031 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47398 * 178.78496 * 7 6 3 38 38 H 1.09004 * 109.46726 * 298.78897 * 7 6 3 39 39 H 1.09001 * 109.47273 * 58.77874 * 7 6 3 40 40 H 1.08999 * 109.47758 * 50.00133 * 8 6 3 41 41 H 1.09005 * 109.47601 * 289.99951 * 8 6 3 42 42 H 1.08997 * 109.46894 * 60.00192 * 9 8 6 43 43 H 1.08994 * 109.46815 * 299.99784 * 9 8 6 44 44 H 0.97003 * 120.00355 * 0.02562 * 10 9 8 45 45 H 1.08996 * 109.58602 * 353.41952 * 16 15 13 46 46 H 1.08998 * 109.58261 * 113.70430 * 16 15 13 47 47 H 1.08998 * 109.49756 * 65.39024 * 17 16 15 48 48 H 1.08999 * 109.49472 * 185.48529 * 17 16 15 49 49 H 1.09006 * 109.34560 * 301.13462 * 18 17 16 50 50 H 0.96993 * 120.00022 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.49356 * 178.75360 * 27 18 17 52 52 H 1.08995 * 109.52600 * 58.67051 * 27 18 17 53 53 H 1.09005 * 109.58481 * 246.15519 * 28 15 13 54 54 H 1.08995 * 109.59118 * 6.43969 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 1.6489 2.1217 1.3140 6 7 3.5028 1.4447 -0.1359 7 6 3.9152 0.8157 -1.3978 8 6 4.0395 2.8078 -0.0270 9 6 5.5648 2.7485 0.0773 10 7 6.1002 4.1078 0.1852 11 6 7.4297 4.3021 0.2894 12 8 8.1835 3.3512 0.2933 13 6 7.9759 5.6890 0.4001 14 8 7.2197 6.6321 0.5063 15 7 9.3081 5.8921 0.3819 16 6 9.8579 7.2545 0.3961 17 6 10.8228 7.4122 -0.7833 18 6 11.8780 6.3048 -0.7251 19 6 12.8470 6.4747 -1.8666 20 1 12.9653 5.6874 -2.5963 21 6 13.5826 7.6355 -1.9795 22 7 13.4389 8.5941 -1.0906 23 14 14.7843 7.8458 -3.3940 24 1 14.0518 7.7586 -4.6829 25 1 15.4447 9.1718 -3.2894 26 1 15.8111 6.7747 -3.3348 27 6 11.1969 4.9386 -0.8336 28 6 10.2382 4.7552 0.3471 29 1 -0.3632 0.5879 0.8429 30 1 -0.3633 0.4360 -0.9306 31 1 -0.3633 -1.0239 0.0878 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 0.5636 2.1200 1.4148 35 1 2.0923 1.5796 2.1492 36 1 2.0119 3.1495 1.3138 37 1 5.0013 0.8500 -1.4829 38 1 3.5821 -0.2221 -1.4123 39 1 3.4680 1.3525 -2.2345 40 1 3.6329 3.2885 0.8627 41 1 3.7578 3.3809 -0.9104 42 1 5.9714 2.2679 -0.8126 43 1 5.8465 2.1754 0.9606 44 1 5.4977 4.8680 0.1825 45 1 9.0468 7.9768 0.3037 46 1 10.3926 7.4230 1.3308 47 1 10.2692 7.3357 -1.7191 48 1 11.3102 8.3855 -0.7269 49 1 12.4162 6.3681 0.2207 50 1 13.9560 9.4108 -1.1702 51 1 11.9523 4.1530 -0.8142 52 1 10.6383 4.8832 -1.7679 53 1 10.8061 4.7191 1.2768 54 1 9.6779 3.8283 0.2249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323991688.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:15 Heat of formation + Delta-G solvation = -74.314724 kcal Electronic energy + Delta-G solvation = -30015.736385 eV Core-core repulsion = 25987.270261 eV Total energy + Delta-G solvation = -4028.466125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03892 -40.09391 -39.46165 -38.60591 -36.55801 -35.31360 -34.33952 -32.93739 -31.86276 -30.55367 -30.33957 -28.31703 -26.69517 -25.83620 -25.01977 -24.26189 -23.42330 -22.48921 -21.72774 -20.74498 -20.43377 -18.66166 -18.50878 -18.08140 -17.46765 -17.09545 -16.77700 -16.51410 -16.27767 -15.94926 -15.65119 -15.59235 -15.39209 -15.05519 -14.72998 -14.62386 -14.49679 -14.36559 -14.10694 -13.86890 -13.50663 -13.47127 -13.34644 -13.07029 -12.83554 -12.81177 -12.62391 -12.58360 -12.46706 -12.34153 -12.18497 -12.11850 -11.94531 -11.92785 -11.57252 -11.45376 -11.28633 -11.22835 -10.87662 -10.44243 -10.35825 -9.98785 -9.69914 -9.33714 -8.07873 -6.22054 0.29179 1.22822 1.42464 1.42886 1.50638 2.08705 2.38765 2.43998 2.94897 3.18086 3.28298 3.75958 3.89623 3.99826 4.06470 4.13333 4.30625 4.35812 4.37229 4.38813 4.44083 4.48824 4.52303 4.59026 4.60742 4.66013 4.69787 4.74514 4.77213 4.83096 4.88904 4.95272 5.01925 5.04875 5.11651 5.12907 5.18944 5.19625 5.24836 5.35910 5.41604 5.43595 5.45529 5.49366 5.62419 5.95210 5.96851 6.04264 6.09104 6.11648 6.30137 6.37826 6.68162 6.87765 6.89734 7.45798 8.95386 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.001835 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.134168 B =15258.234795 C =15761.634025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.040 0.960 5 C -0.151 4.151 6 N -0.541 5.541 7 C 0.014 3.986 8 C 0.043 3.957 9 C 0.123 3.877 10 N -0.683 5.683 11 C 0.519 3.481 12 O -0.519 6.519 13 C 0.498 3.502 14 O -0.554 6.554 15 N -0.568 5.568 16 C 0.114 3.886 17 C -0.110 4.110 18 C 0.042 3.958 19 C -0.535 4.535 20 H 0.051 0.949 21 C 0.015 3.985 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.111 4.111 28 C 0.052 3.948 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.420 0.580 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.079 0.921 49 H 0.002 0.998 50 H 0.261 0.739 51 H 0.067 0.933 52 H 0.042 0.958 53 H 0.065 0.935 54 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.958 -15.374 3.500 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.027 4.027 4 H 0.058 0.942 5 C -0.209 4.209 6 N -0.266 5.266 7 C -0.134 4.134 8 C -0.085 4.085 9 C 0.000 4.000 10 N -0.336 5.336 11 C 0.300 3.700 12 O -0.398 6.398 13 C 0.281 3.719 14 O -0.434 6.434 15 N -0.299 5.299 16 C -0.007 4.007 17 C -0.149 4.149 18 C 0.024 3.976 19 C -0.573 4.573 20 H 0.069 0.931 21 C -0.184 4.184 22 N -0.554 5.554 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.149 4.149 28 C -0.068 4.068 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.257 0.743 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.044 0.956 48 H 0.098 0.902 49 H 0.020 0.980 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.061 0.939 53 H 0.084 0.916 54 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -25.571 -15.669 3.987 30.254 hybrid contribution 0.647 1.429 -1.462 2.144 sum -24.924 -14.240 2.525 28.816 Atomic orbital electron populations 1.21808 0.94769 1.02241 1.02090 1.21588 0.96162 0.95080 1.02544 1.21726 0.85820 0.97248 0.97924 0.94196 1.22010 1.02040 1.00298 0.96510 1.61907 1.11194 1.17870 1.35675 1.22573 1.01430 1.00339 0.89073 1.22284 0.92555 0.90770 1.02875 1.21495 0.94026 0.81262 1.03219 1.45617 1.05638 1.11302 1.71001 1.19924 0.83844 0.88687 0.77559 1.90275 1.55564 1.43445 1.50483 1.20238 0.83062 0.89804 0.78804 1.90692 1.57631 1.43987 1.51088 1.48227 1.04995 1.09173 1.67515 1.21805 0.97095 0.82116 0.99720 1.21780 0.95466 1.03252 0.94396 1.18663 0.92426 0.91142 0.95406 1.21541 1.22645 1.01835 1.11313 0.93096 1.25702 0.98523 0.95781 0.98398 1.69956 1.41964 1.07041 1.36413 0.85708 0.79323 0.77234 0.79945 1.20010 1.20923 1.19700 1.21820 0.97535 0.98670 0.96920 1.23436 0.92913 0.91707 0.98734 0.91959 0.92825 0.92130 0.91733 0.91632 0.90836 0.92118 0.92249 0.91201 0.90071 0.95312 0.88371 0.93478 0.91003 0.90303 0.74269 0.89984 0.91308 0.95599 0.90242 0.97972 0.92952 0.91462 0.93867 0.91638 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.78 71.98 0.70 -0.44 16 2 C -0.12 -1.11 5.34 30.59 0.16 -0.95 16 3 C 0.08 0.87 2.14 44.91 0.10 0.96 16 4 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 5 C -0.15 -1.44 8.61 71.98 0.62 -0.82 16 6 N -0.54 -6.91 4.63 -897.01 -4.15 -11.07 16 7 C 0.01 0.16 9.03 127.69 1.15 1.32 16 8 C 0.04 0.55 4.81 86.31 0.42 0.96 16 9 C 0.12 2.06 5.61 86.38 0.48 2.55 16 10 N -0.68 -14.08 5.55 -464.41 -2.58 -16.66 16 11 C 0.52 14.73 7.81 87.27 0.68 15.41 16 12 O -0.52 -16.20 13.01 -3.24 -0.04 -16.25 16 13 C 0.50 16.96 7.76 87.27 0.68 17.63 16 14 O -0.55 -20.11 15.92 -3.24 -0.05 -20.16 16 15 N -0.57 -21.15 2.97 -820.47 -2.44 -23.59 16 16 C 0.11 4.62 6.42 86.36 0.55 5.18 16 17 C -0.11 -5.28 5.16 30.68 0.16 -5.12 16 18 C 0.04 2.11 2.06 -11.50 -0.02 2.08 16 19 C -0.54 -29.53 8.56 25.60 0.22 -29.31 16 20 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.81 5.30 84.66 0.45 1.26 16 22 N -0.91 -52.13 11.30 21.45 0.24 -51.89 16 23 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 28 C 0.05 1.89 6.27 86.36 0.54 2.44 16 29 H 0.06 0.43 6.37 -2.39 -0.02 0.41 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.62 6.16 -2.38 -0.01 0.61 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.56 6.49 -2.39 -0.02 0.54 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.55 6.13 -2.38 -0.01 0.54 16 37 H 0.07 0.90 6.25 -2.39 -0.01 0.88 16 38 H 0.08 0.85 6.27 -2.38 -0.01 0.83 16 39 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.10 1.10 5.68 -2.39 -0.01 1.09 16 41 H 0.05 0.57 8.12 -2.38 -0.02 0.55 16 42 H 0.07 1.29 6.45 -2.39 -0.02 1.28 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.42 7.52 7.96 -92.71 -0.74 6.78 16 45 H 0.08 3.23 7.03 -2.39 -0.02 3.21 16 46 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.08 4.23 6.03 -2.39 -0.01 4.22 16 49 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 50 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 52 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 54 H 0.16 5.48 3.70 -85.82 -0.32 5.16 16 Total: -1.00 -62.90 408.74 -0.09 -62.99 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.15 Total: 22.31 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 7.06 Total: 8.65 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -8.93 Total: -103.21 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.09 Total: -36.40 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -62.90 -0.09 -62.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323991688.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.327 kcal (2) G-P(sol) polarization free energy of solvation -62.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds