Wall clock time and date at job start Wed Apr 1 2020 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 N 1.46908 * 109.46890 * 180.02562 * 3 2 1 5 5 C 1.46844 * 110.99813 * 45.79025 * 4 3 2 6 6 C 1.53036 * 109.52317 * 185.83686 * 5 4 3 7 7 C 1.53120 * 109.28246 * 300.82579 * 6 5 4 8 8 C 1.53097 * 109.15523 * 57.64942 * 7 6 5 9 9 H 1.09006 * 109.50297 * 62.29079 * 8 7 6 10 10 C 1.50695 * 109.49173 * 182.40084 * 8 7 6 11 11 O 1.21285 * 119.99728 * 24.66696 * 10 8 7 12 12 N 1.34779 * 120.00430 * 204.66767 * 10 8 7 13 13 C 1.47154 * 120.97969 * 4.54869 * 12 10 8 14 14 C 1.52877 * 108.60650 * 230.49971 * 13 12 10 15 15 O 1.42952 * 109.30082 * 307.93491 * 14 13 12 16 16 C 1.42969 * 114.16639 * 62.44622 * 15 14 13 17 17 H 1.08997 * 109.50892 * 57.34847 * 16 15 14 18 18 C 1.52997 * 109.51185 * 177.49571 * 16 15 14 19 19 N 1.46502 * 109.47536 * 299.74824 * 18 16 15 20 20 C 1.36935 * 120.00250 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00098 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00270 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99556 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00307 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46952 * 60.00641 * 24 22 20 26 26 H 1.48502 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47236 * 300.00234 * 24 22 20 28 28 C 1.47153 * 120.98532 * 184.82993 * 12 10 8 29 29 C 1.46844 * 111.00188 * 170.00436 * 4 3 2 30 30 H 1.08998 * 109.47042 * 59.99446 * 1 2 3 31 31 H 1.08998 * 109.46651 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46603 * 299.99426 * 1 2 3 33 33 H 1.09002 * 109.46858 * 240.00879 * 2 1 3 34 34 H 1.08999 * 109.47678 * 120.00146 * 2 1 3 35 35 H 1.09009 * 109.47136 * 60.00901 * 3 2 1 36 36 H 1.08998 * 109.47838 * 300.00066 * 3 2 1 37 37 H 1.08996 * 109.46846 * 305.85414 * 5 4 3 38 38 H 1.09004 * 109.46086 * 65.83884 * 5 4 3 39 39 H 1.09008 * 109.50141 * 60.76338 * 6 5 4 40 40 H 1.08998 * 109.50612 * 180.87769 * 6 5 4 41 41 H 1.08992 * 109.52455 * 177.55577 * 7 6 5 42 42 H 1.09000 * 109.52160 * 297.68910 * 7 6 5 43 43 H 1.09004 * 109.68050 * 350.27891 * 13 12 10 44 44 H 1.08998 * 109.68314 * 110.83225 * 13 12 10 45 45 H 1.09000 * 109.58217 * 187.92209 * 14 13 12 46 46 H 1.09005 * 109.41205 * 67.84403 * 14 13 12 47 47 H 1.09003 * 109.47591 * 59.75291 * 18 16 15 48 48 H 1.09002 * 109.47191 * 179.74704 * 18 16 15 49 49 H 0.97001 * 119.99982 * 0.02562 * 19 18 16 50 50 H 0.97011 * 119.99635 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.67763 * 249.16751 * 28 12 10 52 52 H 1.09005 * 109.67769 * 9.71972 * 28 12 10 53 53 H 1.09003 * 109.45912 * 294.18057 * 29 4 3 54 54 H 1.09008 * 109.46230 * 54.15261 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0348 0.4869 -0.9836 6 6 5.5578 0.4074 -0.8557 7 6 6.1584 1.7956 -1.0939 8 6 5.5581 2.7819 -0.0885 9 1 5.8217 2.4753 0.9238 10 6 6.0997 4.1628 -0.3541 11 8 6.5035 4.4534 -1.4602 12 7 6.1355 5.0749 0.6375 13 6 5.7446 4.7171 2.0103 14 6 4.7340 5.7477 2.5140 15 8 5.2656 7.0614 2.3267 16 6 5.5053 7.4066 0.9602 17 1 4.5793 7.3124 0.3931 18 6 6.0114 8.8481 0.8784 19 7 5.0021 9.7524 1.4349 20 6 5.2355 11.1013 1.4690 21 1 6.1636 11.4986 1.0852 22 6 4.2790 11.9582 1.9958 23 7 3.1477 11.4741 2.4630 24 14 4.5971 13.7983 2.0416 25 1 4.8050 14.2993 0.6591 26 1 3.4299 14.4876 2.6480 27 1 5.8096 14.0710 2.8545 28 6 6.5608 6.4596 0.3781 29 6 4.0352 2.7928 -0.2386 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 1.6767 1.9564 0.8901 36 1 1.6766 1.9565 -0.8899 37 1 3.6032 -0.4971 -0.8005 38 1 3.7718 0.8176 -1.9884 39 1 5.8215 0.0635 0.1446 40 1 5.9492 -0.2904 -1.5959 41 1 7.2393 1.7525 -0.9610 42 1 5.9287 2.1227 -2.1079 43 1 5.2906 3.7262 2.0162 44 1 6.6230 4.7229 2.6555 45 1 4.5396 5.5812 3.5735 46 1 3.8045 5.6478 1.9532 47 1 6.9363 8.9414 1.4477 48 1 6.1983 9.1091 -0.1633 49 1 4.1687 9.3956 1.7800 50 1 2.4793 12.0729 2.8315 51 1 7.5229 6.6437 0.8562 52 1 6.6471 6.6219 -0.6963 53 1 3.7718 3.1126 -1.2468 54 1 3.6037 3.4836 0.4859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327020678.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:35 Heat of formation + Delta-G solvation = -89.278917 kcal Electronic energy + Delta-G solvation = -30913.122514 eV Core-core repulsion = 26884.007493 eV Total energy + Delta-G solvation = -4029.115021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82963 -40.22598 -39.22001 -36.69341 -35.92732 -35.78094 -33.97414 -32.83907 -32.45279 -31.60884 -29.34447 -27.47476 -27.26658 -25.44539 -24.77027 -23.99582 -23.88077 -22.49994 -21.81930 -20.85405 -19.91299 -19.25018 -18.39365 -17.79125 -17.36409 -16.93338 -16.68053 -16.42820 -16.30648 -16.11394 -15.94794 -15.58234 -15.32580 -15.03756 -14.91803 -14.85953 -14.53288 -14.35133 -14.21830 -13.97353 -13.74533 -13.42361 -13.37631 -13.03614 -12.95258 -12.76173 -12.69857 -12.62880 -12.37773 -12.29119 -12.09829 -12.05306 -11.90114 -11.82629 -11.71313 -11.54353 -11.43326 -11.34432 -11.17199 -10.95414 -10.72742 -9.66973 -9.38178 -9.01758 -7.94399 -5.24114 1.39240 1.47181 1.51189 1.57088 1.74297 2.56128 2.73575 2.81402 3.38686 3.39571 3.54966 3.62522 3.75210 3.87438 3.93111 3.98545 4.03159 4.04077 4.11957 4.16426 4.22715 4.28883 4.34362 4.40113 4.41190 4.48259 4.50352 4.58206 4.62057 4.67186 4.72146 4.73870 4.77300 4.82901 4.86107 4.91819 4.93385 4.98064 5.06939 5.10166 5.14404 5.21379 5.23682 5.30122 5.39489 5.41906 5.47462 5.98731 6.06540 6.21617 6.24070 6.27920 6.98458 7.33042 8.06678 8.31976 9.29102 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.002337 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.078710 B =11976.751111 C =13148.504223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.052 3.948 4 N -0.531 5.531 5 C 0.043 3.957 6 C -0.108 4.108 7 C -0.103 4.103 8 C -0.093 4.093 9 H 0.125 0.875 10 C 0.518 3.482 11 O -0.579 6.579 12 N -0.612 5.612 13 C 0.074 3.926 14 C 0.039 3.961 15 O -0.386 6.386 16 C 0.089 3.911 17 H 0.047 0.953 18 C 0.160 3.840 19 N -0.739 5.739 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.978 3.022 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.094 3.906 29 C 0.073 3.927 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.101 0.899 38 H 0.023 0.977 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.128 0.872 46 H 0.050 0.950 47 H 0.031 0.969 48 H 0.041 0.959 49 H 0.376 0.624 50 H 0.252 0.748 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.019 0.981 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -30.607 -3.085 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.255 5.255 5 C -0.084 4.084 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.114 4.114 9 H 0.143 0.857 10 C 0.308 3.692 11 O -0.459 6.459 12 N -0.345 5.345 13 C -0.048 4.048 14 C -0.038 4.038 15 O -0.305 6.305 16 C 0.030 3.970 17 H 0.065 0.935 18 C 0.033 3.967 19 N -0.382 5.382 20 C -0.381 4.381 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.806 3.194 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.029 4.029 29 C -0.056 4.056 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.119 0.881 38 H 0.041 0.959 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.145 0.855 44 H 0.111 0.889 45 H 0.146 0.854 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.104 0.896 52 H 0.108 0.892 53 H 0.038 0.962 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.566 -30.338 -3.085 30.535 hybrid contribution -0.677 1.582 -0.946 1.964 sum 0.889 -28.756 -4.030 29.051 Atomic orbital electron populations 1.21742 0.95105 1.02324 1.01811 1.21644 0.96076 0.95153 1.02972 1.22251 0.86121 0.98425 1.00780 1.62042 1.07927 1.05647 1.49922 1.22364 0.95943 0.97454 0.92653 1.21586 0.93879 0.95416 1.03697 1.21436 1.00251 0.94748 0.97695 1.21348 0.95982 0.90162 1.03921 0.85705 1.21208 0.77263 0.87465 0.83293 1.90673 1.49492 1.80894 1.24805 1.48293 1.66045 1.09950 1.10211 1.22667 1.00273 1.00662 0.81211 1.23141 0.95269 0.81729 1.03702 1.88111 1.84533 1.33011 1.24856 1.22431 0.96951 0.94141 0.83426 0.93504 1.20766 0.92393 0.86708 0.96848 1.42385 1.19004 1.02999 1.73835 1.19630 1.01331 0.84290 1.32842 0.90461 1.25627 0.96544 1.02733 1.01959 1.69840 1.08778 1.35312 1.48039 0.85152 0.76689 0.79668 0.77870 1.20296 1.22017 1.20280 1.22071 0.97818 0.80682 1.02351 1.21839 0.92510 0.91619 0.99623 0.93227 0.91644 0.92518 0.91297 0.90579 0.90265 0.95805 0.88092 0.95914 0.89797 0.89672 0.91316 0.93179 0.85491 0.88907 0.85408 0.93150 0.95153 0.94098 0.79257 0.93969 0.89586 0.89240 0.96247 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.22 5.18 30.60 0.16 -1.06 16 3 C 0.05 0.70 5.27 86.30 0.46 1.15 16 4 N -0.53 -7.63 4.81 -896.34 -4.31 -11.93 16 5 C 0.04 0.54 4.85 86.33 0.42 0.96 16 6 C -0.11 -1.25 6.09 30.65 0.19 -1.06 16 7 C -0.10 -1.77 4.86 30.67 0.15 -1.62 16 8 C -0.09 -1.65 1.85 -11.50 -0.02 -1.67 16 9 H 0.13 1.65 6.38 -2.38 -0.02 1.63 16 10 C 0.52 13.21 6.82 87.66 0.60 13.81 16 11 O -0.58 -19.54 15.54 -3.04 -0.05 -19.58 16 12 N -0.61 -14.92 3.03 -818.16 -2.48 -17.39 16 13 C 0.07 1.31 6.42 86.21 0.55 1.87 16 14 C 0.04 0.89 6.97 71.94 0.50 1.39 16 15 O -0.39 -13.42 10.14 -148.98 -1.51 -14.93 16 16 C 0.09 3.13 2.86 30.69 0.09 3.21 16 17 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 18 C 0.16 6.75 5.95 86.38 0.51 7.26 16 19 N -0.74 -39.71 5.50 -343.45 -1.89 -41.60 16 20 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 24 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 C 0.09 2.75 5.91 86.35 0.51 3.26 16 29 C 0.07 1.30 4.57 86.32 0.39 1.69 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.64 6.21 -2.39 -0.01 0.63 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.02 0.37 8.08 -2.39 -0.02 0.35 16 37 H 0.10 0.95 5.81 -2.39 -0.01 0.94 16 38 H 0.02 0.34 8.14 -2.38 -0.02 0.32 16 39 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.09 7.79 -2.39 -0.02 1.07 16 43 H 0.13 1.49 5.24 -2.38 -0.01 1.48 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.38 21.63 7.55 -92.71 -0.70 20.93 16 50 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 51 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.09 2.80 7.12 -2.38 -0.02 2.79 16 53 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 54 H 0.08 1.42 7.82 -2.38 -0.02 1.40 16 Total: -1.00 -73.95 412.51 -1.23 -75.17 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.17 Total: 30.99 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 6.53 Total: 10.81 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -8.39 Total: -131.59 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.56 Total: -34.52 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -73.95 -1.23 -75.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327020678.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.107 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds