Wall clock time and date at job start Wed Apr 1 2020 00:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 N 1.46905 * 109.46770 * 180.02562 * 3 2 1 5 5 C 1.46823 * 110.98215 * 294.21387 * 4 3 2 6 6 C 1.53044 * 109.51761 * 174.15576 * 5 4 3 7 7 C 1.53124 * 109.27367 * 59.17868 * 6 5 4 8 8 C 1.53115 * 109.16152 * 302.34683 * 7 6 5 9 9 H 1.09002 * 109.50132 * 297.71211 * 8 7 6 10 10 C 1.50701 * 109.53212 * 177.61818 * 8 7 6 11 11 O 1.21281 * 119.99830 * 265.01657 * 10 8 7 12 12 N 1.34770 * 120.00152 * 85.02239 * 10 8 7 13 13 C 1.47156 * 120.98278 * 4.53357 * 12 10 8 14 14 C 1.52874 * 108.60788 * 230.49798 * 13 12 10 15 15 O 1.42959 * 109.30392 * 307.93727 * 14 13 12 16 16 C 1.42962 * 114.16611 * 62.44474 * 15 14 13 17 17 H 1.09006 * 109.50883 * 57.34516 * 16 15 14 18 18 C 1.52993 * 109.55386 * 177.47303 * 16 15 14 19 19 N 1.46498 * 109.47360 * 299.77468 * 18 16 15 20 20 C 1.36935 * 120.00240 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99938 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99991 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00288 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00051 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47098 * 89.99738 * 24 22 20 26 26 H 1.48496 * 109.47088 * 209.99764 * 24 22 20 27 27 H 1.48499 * 109.46866 * 329.99860 * 24 22 20 28 28 C 1.47155 * 120.98485 * 184.81705 * 12 10 8 29 29 C 1.46849 * 111.00008 * 170.00466 * 4 3 2 30 30 H 1.08995 * 109.47499 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47083 * 300.00061 * 1 2 3 32 32 H 1.09001 * 109.46962 * 59.99926 * 1 2 3 33 33 H 1.09006 * 109.46809 * 239.99979 * 2 1 3 34 34 H 1.08996 * 109.46955 * 120.00525 * 2 1 3 35 35 H 1.08997 * 109.47254 * 60.00043 * 3 2 1 36 36 H 1.09001 * 109.47325 * 299.99852 * 3 2 1 37 37 H 1.09003 * 109.47105 * 54.14281 * 5 4 3 38 38 H 1.09003 * 109.46235 * 294.16537 * 5 4 3 39 39 H 1.08990 * 109.50101 * 299.24056 * 6 5 4 40 40 H 1.09002 * 109.50397 * 179.11715 * 6 5 4 41 41 H 1.09001 * 109.51796 * 182.43778 * 7 6 5 42 42 H 1.09001 * 109.57288 * 62.28557 * 7 6 5 43 43 H 1.08996 * 109.67905 * 350.28490 * 13 12 10 44 44 H 1.09005 * 109.68061 * 110.83192 * 13 12 10 45 45 H 1.08997 * 109.58119 * 187.91793 * 14 13 12 46 46 H 1.08998 * 109.40672 * 67.84709 * 14 13 12 47 47 H 1.09005 * 109.47102 * 59.77325 * 18 16 15 48 48 H 1.08998 * 109.47040 * 179.77301 * 18 16 15 49 49 H 0.97008 * 119.99818 * 359.97438 * 19 18 16 50 50 H 0.97006 * 120.00753 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.68123 * 249.16789 * 28 12 10 52 52 H 1.08996 * 109.67854 * 9.71696 * 28 12 10 53 53 H 1.09001 * 109.46398 * 65.81904 * 29 4 3 54 54 H 1.09002 * 109.45412 * 305.84062 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0353 0.8800 1.2493 6 6 5.5582 0.7609 1.1552 7 6 6.1590 2.1468 0.9044 8 6 5.5580 2.7307 -0.3772 9 1 5.8210 2.0967 -1.2240 10 6 6.0998 4.1190 -0.6008 11 8 5.4748 5.0835 -0.2133 12 7 7.2787 4.2889 -1.2313 13 6 8.0070 3.1425 -1.7977 14 6 9.4535 3.1920 -1.3054 15 8 9.9994 4.4861 -1.5721 16 6 9.3341 5.5534 -0.8924 17 1 9.3571 5.3710 0.1821 18 6 10.0391 6.8756 -1.2015 19 7 11.4298 6.8057 -0.7462 20 6 12.2611 7.8802 -0.9174 21 1 11.8917 8.7791 -1.3884 22 6 13.5790 7.8137 -0.4864 23 7 14.0293 6.7181 0.0872 24 14 14.7133 9.2793 -0.7206 25 1 14.6298 10.1648 0.4684 26 1 16.1100 8.8028 -0.8858 27 1 14.3018 10.0353 -1.9307 28 6 7.8788 5.6255 -1.3685 29 6 4.0353 2.7926 -0.2386 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.6034 -0.1072 1.4138 38 1 3.7729 1.5342 2.0808 39 1 5.8210 0.0960 0.3326 40 1 5.9502 0.3580 2.0891 41 1 7.2399 2.0606 0.7935 42 1 5.9302 2.8017 1.7452 43 1 7.5406 2.2133 -1.4704 44 1 7.9905 3.1985 -2.8861 45 1 10.0418 2.4348 -1.8235 46 1 9.4777 3.0007 -0.2326 47 1 10.0173 7.0563 -2.2763 48 1 9.5284 7.6888 -0.6859 49 1 11.7615 5.9984 -0.3227 50 1 14.9502 6.6717 0.3887 51 1 7.8492 5.9358 -2.4130 52 1 7.3275 6.3399 -0.7571 53 1 3.7728 3.4377 0.5999 54 1 3.6032 3.1943 -1.1551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327020680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:38 Heat of formation + Delta-G solvation = -92.259789 kcal Electronic energy + Delta-G solvation = -30621.319090 eV Core-core repulsion = 26592.074808 eV Total energy + Delta-G solvation = -4029.244281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.81539 -40.20194 -39.14411 -36.70024 -36.01621 -35.68806 -33.96504 -32.91704 -32.31817 -31.64834 -29.34299 -27.56327 -27.19145 -25.36837 -24.72658 -24.08446 -23.73566 -22.41711 -21.86956 -21.01413 -19.89391 -19.24644 -18.45233 -17.77758 -17.31671 -16.91375 -16.56957 -16.42289 -16.31593 -16.00134 -15.93744 -15.53878 -15.33299 -15.03407 -14.93312 -14.82469 -14.73311 -14.31200 -14.18982 -13.93154 -13.61500 -13.56754 -13.41274 -13.05181 -12.84054 -12.79942 -12.65554 -12.59771 -12.37457 -12.26611 -12.09698 -12.04751 -11.98524 -11.88151 -11.69190 -11.57499 -11.43370 -11.31840 -11.17712 -10.95972 -10.69700 -9.66015 -9.36646 -9.01086 -7.94097 -5.23677 1.43605 1.47778 1.50117 1.58610 1.72113 2.56355 2.74274 2.82581 3.39176 3.39906 3.54343 3.67611 3.74568 3.87609 3.92760 3.99191 4.03483 4.04879 4.13617 4.18533 4.22210 4.29332 4.36533 4.43095 4.45884 4.49001 4.52065 4.58940 4.64241 4.65667 4.72356 4.76044 4.77249 4.83642 4.86074 4.93199 4.94287 4.94578 5.06743 5.08235 5.11667 5.23280 5.25507 5.30878 5.36622 5.43882 5.48203 6.02533 6.09141 6.22666 6.24805 6.28532 6.99178 7.33535 8.07168 8.32540 9.29446 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.001940 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.818675 B =14429.650622 C =14722.477285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.053 3.947 4 N -0.536 5.536 5 C 0.047 3.953 6 C -0.107 4.107 7 C -0.110 4.110 8 C -0.092 4.092 9 H 0.125 0.875 10 C 0.519 3.481 11 O -0.583 6.583 12 N -0.611 5.611 13 C 0.073 3.927 14 C 0.038 3.962 15 O -0.387 6.387 16 C 0.090 3.910 17 H 0.048 0.952 18 C 0.159 3.841 19 N -0.739 5.739 20 C -0.250 4.250 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.977 3.023 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.269 1.269 28 C 0.095 3.905 29 C 0.080 3.920 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.022 0.978 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.129 0.871 44 H 0.091 0.909 45 H 0.129 0.871 46 H 0.053 0.947 47 H 0.030 0.970 48 H 0.041 0.959 49 H 0.376 0.624 50 H 0.251 0.749 51 H 0.085 0.915 52 H 0.089 0.911 53 H 0.023 0.977 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.646 -19.581 -1.288 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.260 5.260 5 C -0.081 4.081 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.114 4.114 9 H 0.143 0.857 10 C 0.309 3.691 11 O -0.462 6.462 12 N -0.344 5.344 13 C -0.048 4.048 14 C -0.039 4.039 15 O -0.306 6.306 16 C 0.031 3.969 17 H 0.066 0.934 18 C 0.032 3.968 19 N -0.382 5.382 20 C -0.381 4.381 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.806 3.194 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.194 1.194 28 C -0.029 4.029 29 C -0.049 4.049 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.040 0.960 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.146 0.854 44 H 0.110 0.890 45 H 0.146 0.854 46 H 0.071 0.929 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.208 0.792 50 H 0.060 0.940 51 H 0.103 0.897 52 H 0.107 0.893 53 H 0.041 0.959 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.643 -19.174 -1.667 32.062 hybrid contribution 0.545 1.437 1.044 1.858 sum -25.098 -17.737 -0.623 30.740 Atomic orbital electron populations 1.21733 0.95022 1.02295 1.01814 1.21491 0.95833 0.95058 1.02781 1.22202 0.86223 0.98355 1.00654 1.61969 1.08000 1.20429 1.35590 1.22278 0.96141 1.00363 0.89299 1.21566 0.93691 0.95435 1.03745 1.21564 1.00854 0.97667 0.94703 1.21315 0.96035 0.91807 1.02202 0.85713 1.21196 0.79944 0.92185 0.75803 1.90674 1.59125 1.44002 1.52434 1.48254 1.21139 1.08611 1.56410 1.22675 0.92363 0.89602 1.00194 1.23160 0.94169 0.85490 1.01110 1.88110 1.57294 1.15431 1.69726 1.22424 0.90925 0.88324 0.95244 0.93420 1.20768 0.85089 0.93298 0.97611 1.42378 1.07387 1.16103 1.72292 1.19671 0.92393 0.94272 1.31792 0.90480 1.25607 0.98885 1.00344 1.01905 1.69837 1.15977 1.28702 1.47344 0.85088 0.77807 0.78552 0.77973 1.21335 1.22029 1.19394 1.22066 0.92470 0.85433 1.02944 1.21699 0.92918 0.89508 1.00748 0.91722 0.92974 0.92622 0.91137 0.91567 0.95475 0.90883 0.88695 0.95959 0.89382 0.89585 0.90196 0.93393 0.85357 0.89035 0.85369 0.92914 0.95199 0.94119 0.79231 0.93993 0.89668 0.89282 0.95904 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.11 -1.13 5.86 30.60 0.18 -0.95 16 3 C 0.05 0.71 4.96 86.30 0.43 1.14 16 4 N -0.54 -7.92 4.66 -896.39 -4.17 -12.09 16 5 C 0.05 0.59 5.29 86.33 0.46 1.05 16 6 C -0.11 -1.17 6.09 30.65 0.19 -0.98 16 7 C -0.11 -1.70 5.16 30.67 0.16 -1.54 16 8 C -0.09 -1.61 1.85 -11.49 -0.02 -1.63 16 9 H 0.13 1.62 6.37 -2.39 -0.02 1.60 16 10 C 0.52 13.13 6.82 87.66 0.60 13.73 16 11 O -0.58 -19.64 15.57 -3.03 -0.05 -19.68 16 12 N -0.61 -14.72 3.03 -818.16 -2.48 -17.20 16 13 C 0.07 1.26 6.42 86.21 0.55 1.82 16 14 C 0.04 0.85 6.97 71.94 0.50 1.35 16 15 O -0.39 -13.30 10.15 -148.98 -1.51 -14.81 16 16 C 0.09 3.11 2.86 30.69 0.09 3.20 16 17 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 18 C 0.16 6.71 5.96 86.38 0.51 7.22 16 19 N -0.74 -39.51 5.50 -343.47 -1.89 -41.40 16 20 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 23 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16 24 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 C 0.09 2.74 5.91 86.35 0.51 3.25 16 29 C 0.08 1.51 4.29 86.32 0.37 1.88 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 35 H 0.03 0.40 8.12 -2.39 -0.02 0.38 16 36 H 0.07 0.99 7.99 -2.39 -0.02 0.97 16 37 H 0.09 0.93 6.21 -2.39 -0.01 0.92 16 38 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 1.12 7.83 -2.39 -0.02 1.10 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.13 1.34 5.24 -2.39 -0.01 1.33 16 44 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.38 21.53 7.55 -92.70 -0.70 20.83 16 50 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 51 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 52 H 0.09 2.79 7.12 -2.39 -0.02 2.77 16 53 H 0.02 0.54 7.84 -2.39 -0.02 0.52 16 54 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 Total: -1.00 -74.12 413.65 -1.08 -75.19 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.17 Total: 29.87 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.54 Total: 11.41 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -8.26 Total: -131.03 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.56 Total: -34.49 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -74.12 -1.08 -75.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327020680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.068 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds