Wall clock time and date at job start Wed Apr 1 2020 00:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47069 * 2 1 4 4 N 1.46907 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.48807 * 111.18374 * 52.66297 * 4 3 2 6 6 C 1.54937 * 103.34733 * 159.50320 * 5 4 3 7 7 C 1.54590 * 102.92422 * 322.69056 * 6 5 4 8 8 C 1.47909 * 110.99903 * 170.00017 * 4 3 2 9 9 H 1.09003 * 109.91749 * 333.70592 * 8 4 3 10 10 C 1.50700 * 109.91472 * 94.80252 * 8 4 3 11 11 O 1.21278 * 120.00337 * 359.59718 * 10 8 4 12 12 N 1.34779 * 119.99583 * 179.59832 * 10 8 4 13 13 C 1.46922 * 120.63168 * 359.97438 * 12 10 8 14 14 C 1.53196 * 108.77606 * 233.58995 * 13 12 10 15 15 C 1.53037 * 109.31040 * 305.36550 * 14 13 12 16 16 C 1.53039 * 109.54101 * 61.36876 * 15 14 13 17 17 C 1.53000 * 109.52658 * 178.66687 * 16 15 14 18 18 O 1.42900 * 109.47028 * 299.85297 * 17 16 15 19 19 N 1.46494 * 109.49544 * 58.58228 * 16 15 14 20 20 C 1.36932 * 120.00303 * 60.16710 * 19 16 15 21 21 H 1.08005 * 119.99953 * 0.02562 * 20 19 16 22 22 C 1.38810 * 120.00518 * 179.97438 * 20 19 16 23 23 N 1.31618 * 119.99710 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00436 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47005 * 59.99801 * 24 22 20 26 26 H 1.48497 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47121 * 300.00118 * 24 22 20 28 28 C 1.46931 * 120.62785 * 179.97438 * 12 10 8 29 29 H 1.09001 * 109.47297 * 299.99861 * 1 2 3 30 30 H 1.09000 * 109.46861 * 60.00087 * 1 2 3 31 31 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47433 * 239.99602 * 2 1 3 33 33 H 1.09000 * 109.46861 * 119.99912 * 2 1 3 34 34 H 1.09000 * 109.47689 * 59.99917 * 3 2 1 35 35 H 1.09000 * 109.47207 * 299.99701 * 3 2 1 36 36 H 1.09004 * 110.51742 * 41.07285 * 5 4 3 37 37 H 1.08995 * 110.84420 * 278.09496 * 5 4 3 38 38 H 1.09001 * 110.72430 * 204.32993 * 6 5 4 39 39 H 1.09004 * 110.72458 * 81.04945 * 6 5 4 40 40 H 1.08996 * 110.31309 * 263.04185 * 7 6 5 41 41 H 1.09005 * 110.30990 * 140.86781 * 7 6 5 42 42 H 1.08999 * 109.58543 * 113.80083 * 13 12 10 43 43 H 1.09003 * 109.70593 * 353.44277 * 13 12 10 44 44 H 1.08999 * 109.50112 * 65.32084 * 14 13 12 45 45 H 1.09004 * 109.49641 * 185.41325 * 14 13 12 46 46 H 1.09000 * 109.46060 * 181.39134 * 15 14 13 47 47 H 1.09006 * 109.46385 * 301.34352 * 15 14 13 48 48 H 1.09003 * 109.47077 * 59.85510 * 17 16 15 49 49 H 1.08994 * 109.46990 * 179.84948 * 17 16 15 50 50 H 0.96701 * 113.99979 * 179.97438 * 18 17 16 51 51 H 0.97006 * 119.99603 * 240.16317 * 19 16 15 52 52 H 0.96997 * 120.00311 * 179.97438 * 23 22 20 53 53 H 1.09000 * 109.57916 * 246.19424 * 28 12 10 54 54 H 1.08997 * 109.58813 * 6.62026 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0472 0.6008 -1.1022 6 6 5.4932 1.1277 -1.2813 7 6 5.3378 2.6486 -1.0522 8 6 4.0391 2.8023 -0.2391 9 1 3.3147 3.3890 -0.8040 10 6 4.3333 3.4778 1.0755 11 8 4.1187 2.8958 2.1177 12 7 4.8348 4.7286 1.0930 13 6 5.1006 5.4462 -0.1612 14 6 6.5533 5.9325 -0.1528 15 6 6.8025 6.7604 1.1100 16 6 6.5783 5.8875 2.3469 17 6 6.8597 6.7061 3.6084 18 8 8.2146 7.1600 3.5892 19 7 7.4801 4.7339 2.3012 20 6 8.8357 4.9251 2.2766 21 1 9.2402 5.9265 2.2913 22 6 9.6903 3.8321 2.2338 23 7 9.1974 2.6117 2.2174 24 14 11.5396 4.0929 2.2010 25 1 11.9576 4.8275 3.4220 26 1 12.2246 2.7761 2.1573 27 1 11.9069 4.8826 0.9982 28 6 5.1262 5.4005 2.3668 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.4680 0.7492 -2.0136 37 1 4.0535 -0.4518 -0.8192 38 1 5.8558 0.9244 -2.2889 39 1 6.1579 0.6912 -0.5357 40 1 5.2504 3.1680 -2.0065 41 1 6.1860 3.0346 -0.4868 42 1 4.4294 6.3013 -0.2422 43 1 4.9441 4.7774 -1.0076 44 1 7.2245 5.0738 -0.1632 45 1 6.7359 6.5483 -1.0335 46 1 7.8285 7.1283 1.1064 47 1 6.1141 7.6053 1.1321 48 1 6.1893 7.5649 3.6413 49 1 6.6972 6.0844 4.4887 50 1 8.4637 7.6874 4.3605 51 1 7.1168 3.8345 2.2884 52 1 9.7945 1.8479 2.1872 53 1 4.4571 6.2519 2.4921 54 1 4.9872 4.6996 3.1898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327568704.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:50 Heat of formation + Delta-G solvation = -81.560846 kcal Electronic energy + Delta-G solvation = -32866.830430 eV Core-core repulsion = 28838.050089 eV Total energy + Delta-G solvation = -4028.780340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68174 -39.99984 -38.65263 -37.11007 -35.69298 -35.30651 -33.72689 -32.66661 -31.71846 -31.02520 -29.96023 -26.73037 -26.61110 -26.17734 -25.51155 -23.32906 -23.05742 -22.55254 -21.27496 -20.49754 -19.53159 -19.11987 -18.09412 -17.88223 -17.22640 -17.03297 -16.62733 -16.12796 -15.89538 -15.78921 -15.62490 -15.30048 -15.06915 -14.84916 -14.62869 -14.55875 -14.26036 -13.92675 -13.73742 -13.63217 -13.56303 -13.42350 -13.18315 -12.80846 -12.75208 -12.64127 -12.62561 -12.45071 -12.29762 -12.10534 -11.98575 -11.85566 -11.74429 -11.68305 -11.61466 -11.50733 -11.43524 -11.24890 -10.76060 -10.58887 -10.53605 -9.45657 -9.27577 -8.83728 -7.74152 -4.99775 1.46555 1.49429 1.55141 1.72267 2.05441 2.66466 3.00075 3.44610 3.49765 3.62854 3.71257 3.78094 3.91482 3.96187 4.03628 4.10760 4.15589 4.20002 4.25254 4.30043 4.41954 4.45182 4.48131 4.53723 4.56382 4.59310 4.65545 4.68920 4.72250 4.78413 4.82348 4.85133 4.88310 4.93266 5.01159 5.04815 5.06492 5.15657 5.17858 5.28492 5.31871 5.35025 5.39699 5.60800 5.63887 5.74382 5.89287 5.93549 6.14833 6.46145 6.58366 7.14091 7.37182 7.52862 8.25103 8.49021 9.49215 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003880 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.644638 B = 7214.266832 C = 8197.722469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.055 3.945 4 N -0.528 5.528 5 C 0.047 3.953 6 C -0.124 4.124 7 C -0.119 4.119 8 C 0.062 3.938 9 H 0.103 0.897 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.600 5.600 13 C 0.106 3.894 14 C -0.125 4.125 15 C -0.108 4.108 16 C 0.177 3.823 17 C 0.076 3.924 18 O -0.565 6.565 19 N -0.714 5.714 20 C -0.179 4.179 21 H 0.094 0.906 22 C -0.094 4.094 23 N -0.979 5.979 24 Si 0.959 3.041 25 H -0.287 1.287 26 H -0.308 1.308 27 H -0.282 1.282 28 C 0.121 3.879 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.039 0.961 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.019 0.981 50 H 0.375 0.625 51 H 0.363 0.637 52 H 0.238 0.762 53 H 0.102 0.898 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 5.689 -11.151 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.073 4.073 4 N -0.253 5.253 5 C -0.080 4.080 6 C -0.162 4.162 7 C -0.157 4.157 8 C -0.050 4.050 9 H 0.121 0.879 10 C 0.303 3.697 11 O -0.452 6.452 12 N -0.333 5.333 13 C -0.015 4.015 14 C -0.163 4.163 15 C -0.147 4.147 16 C 0.086 3.914 17 C -0.005 4.005 18 O -0.371 6.371 19 N -0.352 5.352 20 C -0.312 4.312 21 H 0.111 0.889 22 C -0.283 4.283 23 N -0.633 5.633 24 Si 0.791 3.209 25 H -0.214 1.214 26 H -0.235 1.235 27 H -0.208 1.208 28 C -0.003 4.003 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.130 0.870 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.059 0.941 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.038 0.962 50 H 0.223 0.777 51 H 0.195 0.805 52 H 0.047 0.953 53 H 0.120 0.880 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.258 4.958 -10.657 20.881 hybrid contribution 1.332 -0.094 0.679 1.498 sum -15.927 4.865 -9.978 19.413 Atomic orbital electron populations 1.21693 0.94057 1.02422 1.02092 1.21540 0.96802 0.95146 1.02240 1.22317 0.86043 0.98400 1.00508 1.64307 1.09038 1.06864 1.45128 1.23267 0.94183 0.98026 0.92534 1.22475 0.96857 0.94570 1.02287 1.22471 0.94975 0.98076 1.00157 1.22274 0.98769 0.91723 0.92217 0.87938 1.21074 0.76375 0.80570 0.91687 1.90639 1.54237 1.64340 1.35980 1.47953 1.62918 1.14661 1.07771 1.22089 0.96569 0.97597 0.85258 1.21746 0.96167 1.00060 0.98310 1.21731 1.01224 0.97356 0.94436 1.20354 0.89004 0.88071 0.93969 1.22629 0.83613 0.96558 0.97662 1.86724 1.28825 1.73760 1.47776 1.42551 1.02235 1.02959 1.87421 1.19757 0.83301 0.92732 1.35393 0.88888 1.25397 1.00895 0.95436 1.06608 1.69876 1.33696 0.97341 1.62353 0.85396 0.82575 0.75183 0.77751 1.21414 1.23485 1.20843 1.21572 0.94839 0.97343 0.86509 0.93204 0.91607 0.91635 0.90728 0.93205 0.92827 0.92857 0.90808 0.89944 0.88165 0.94173 0.87011 0.93209 0.88461 0.88337 0.94131 0.89352 0.93533 0.90301 0.91408 0.96243 0.77718 0.80546 0.95313 0.87970 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -2.40 5.60 30.59 0.17 -2.23 16 3 C 0.05 1.30 5.03 86.30 0.43 1.73 16 4 N -0.53 -15.44 4.54 -861.65 -3.91 -19.35 16 5 C 0.05 1.09 5.12 86.60 0.44 1.53 16 6 C -0.12 -3.34 7.06 31.80 0.22 -3.12 16 7 C -0.12 -3.26 4.76 31.47 0.15 -3.11 16 8 C 0.06 1.75 2.01 44.31 0.09 1.84 16 9 H 0.10 2.17 7.35 -2.39 -0.02 2.16 16 10 C 0.51 19.01 6.93 87.66 0.61 19.61 16 11 O -0.57 -27.03 15.87 -3.02 -0.05 -27.08 16 12 N -0.60 -19.34 2.84 -818.94 -2.33 -21.67 16 13 C 0.11 2.55 5.63 86.36 0.49 3.04 16 14 C -0.12 -3.71 5.93 30.67 0.18 -3.53 16 15 C -0.11 -3.49 4.39 30.62 0.13 -3.36 16 16 C 0.18 6.66 0.68 3.67 0.00 6.67 16 17 C 0.08 2.59 6.08 71.98 0.44 3.03 16 18 O -0.57 -20.67 9.96 -148.98 -1.48 -22.15 16 19 N -0.71 -36.09 4.22 -303.04 -1.28 -37.37 16 20 C -0.18 -10.00 8.29 84.03 0.70 -9.30 16 21 H 0.09 5.10 5.30 -2.91 -0.02 5.08 16 22 C -0.09 -5.61 5.50 84.86 0.47 -5.14 16 23 N -0.98 -63.63 13.06 21.65 0.28 -63.34 16 24 Si 0.96 49.23 29.55 68.60 2.03 51.25 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 27 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 28 C 0.12 4.12 5.14 86.35 0.44 4.56 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.30 6.81 -2.39 -0.02 1.28 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 0.99 7.81 -2.39 -0.02 0.97 16 36 H 0.07 1.27 8.00 -2.39 -0.02 1.25 16 37 H 0.08 1.93 7.69 -2.39 -0.02 1.91 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 2.14 7.49 -2.39 -0.02 2.12 16 41 H 0.05 1.85 6.87 -2.38 -0.02 1.83 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.10 2.01 4.29 -2.39 -0.01 2.00 16 44 H 0.04 1.63 7.19 -2.39 -0.02 1.61 16 45 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 1.77 6.84 -2.39 -0.02 1.76 16 47 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.38 9.94 9.12 -74.06 -0.68 9.26 16 51 H 0.36 21.35 7.65 -92.70 -0.71 20.64 16 52 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 53 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 54 H 0.06 2.37 7.00 -2.39 -0.02 2.35 16 Total: -1.00 -81.59 403.01 -1.54 -83.14 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -0.49 Total: 45.87 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.68 Total: 10.70 kcal Atomic # 7 Polarization: -134.50 SS G_CDS: -7.23 Total: -141.73 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.53 Total: -49.23 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.25 kcal Total: -81.59 -1.54 -83.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327568704.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.577 kcal (2) G-P(sol) polarization free energy of solvation -81.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds