Wall clock time and date at job start Tue Mar 31 2020 23:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.09004 * 109.47211 * 305.04529 * 3 2 1 5 5 C 1.52997 * 109.47119 * 185.04340 * 3 2 1 6 6 N 1.46900 * 109.47227 * 65.04186 * 3 2 1 7 7 C 1.46899 * 111.00001 * 189.88853 * 6 3 2 8 8 C 1.46896 * 110.99752 * 65.93227 * 6 3 2 9 9 C 1.53009 * 109.47056 * 190.00142 * 8 6 3 10 10 N 1.46497 * 109.46719 * 180.02562 * 9 8 6 11 11 C 1.34780 * 119.99339 * 179.72275 * 10 9 8 12 12 O 1.21351 * 120.00380 * 0.27581 * 11 10 9 13 13 C 1.49450 * 119.99998 * 180.27332 * 11 10 9 14 14 O 1.21357 * 119.99999 * 354.07647 * 13 11 10 15 15 N 1.34770 * 120.00321 * 174.07318 * 13 11 10 16 16 C 1.46930 * 120.63065 * 4.04640 * 15 13 11 17 17 C 1.53187 * 108.77797 * 233.58576 * 16 15 13 18 18 C 1.53043 * 109.31265 * 305.36249 * 17 16 15 19 19 C 1.53041 * 109.53714 * 61.36660 * 18 17 16 20 20 H 1.09006 * 109.50090 * 58.58380 * 19 18 17 21 21 C 1.50701 * 109.49976 * 178.68386 * 19 18 17 22 22 H 1.08003 * 119.99702 * 359.97438 * 21 19 18 23 23 C 1.37871 * 120.00040 * 179.97438 * 21 19 18 24 24 N 1.31519 * 120.00250 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99949 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47350 * 90.00212 * 25 23 21 27 27 H 1.48510 * 109.47284 * 210.00273 * 25 23 21 28 28 H 1.48503 * 109.47331 * 329.99971 * 25 23 21 29 29 C 1.46923 * 120.63395 * 183.76765 * 15 13 11 30 30 H 1.08997 * 109.47231 * 184.97547 * 1 2 3 31 31 H 1.09002 * 109.47189 * 304.98290 * 1 2 3 32 32 H 1.09000 * 109.46803 * 64.97506 * 1 2 3 33 33 H 1.09000 * 109.46727 * 239.99975 * 2 1 3 34 34 H 1.08992 * 109.46982 * 120.00078 * 2 1 3 35 35 H 1.08999 * 109.46954 * 299.99798 * 5 3 2 36 36 H 1.08997 * 109.47178 * 60.00199 * 5 3 2 37 37 H 1.09000 * 109.47292 * 179.97438 * 5 3 2 38 38 H 1.09005 * 109.46907 * 300.74181 * 7 6 3 39 39 H 1.08993 * 109.47527 * 60.74341 * 7 6 3 40 40 H 1.08999 * 109.47113 * 180.74873 * 7 6 3 41 41 H 1.09001 * 109.47435 * 70.00495 * 8 6 3 42 42 H 1.08995 * 109.47216 * 310.00001 * 8 6 3 43 43 H 1.09001 * 109.46710 * 59.99909 * 9 8 6 44 44 H 1.09003 * 109.46781 * 299.99704 * 9 8 6 45 45 H 0.96995 * 120.00843 * 0.02562 * 10 9 8 46 46 H 1.09004 * 109.58598 * 353.37332 * 16 15 13 47 47 H 1.09003 * 109.58284 * 113.65370 * 16 15 13 48 48 H 1.09002 * 109.49911 * 65.31236 * 17 16 15 49 49 H 1.08997 * 109.50098 * 185.41590 * 17 16 15 50 50 H 1.09001 * 109.46376 * 181.38384 * 18 17 16 51 51 H 1.08999 * 109.45918 * 301.35910 * 18 17 16 52 52 H 0.96998 * 120.00214 * 179.97438 * 24 23 21 53 53 H 1.09007 * 109.58921 * 246.20659 * 29 15 13 54 54 H 1.08998 * 109.58734 * 6.62372 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9818 -0.8414 5 6 3.5647 1.4443 -0.1268 6 7 1.6523 2.0990 1.2556 7 6 1.9159 3.5430 1.1979 8 6 2.3338 1.4848 2.4030 9 6 1.7262 2.0179 3.7021 10 7 2.4062 1.4059 4.8463 11 6 2.0396 1.7323 6.1015 12 8 1.1429 2.5294 6.2839 13 6 2.7374 1.1126 7.2688 14 8 3.5588 0.2373 7.0901 15 7 2.4545 1.5258 8.5201 16 6 1.4004 2.5209 8.7595 17 6 1.9874 3.6735 9.5801 18 6 2.6250 3.1144 10.8541 19 6 3.7611 2.1593 10.4812 20 1 4.5019 2.6907 9.8836 21 6 4.4093 1.6342 11.7364 22 1 4.0476 1.9503 12.7037 23 6 5.4639 0.7504 11.6498 24 7 5.9047 0.3659 10.4718 25 14 6.2677 0.1002 13.2055 26 1 5.5824 -1.1458 13.6333 27 1 7.6998 -0.1891 12.9391 28 1 6.1603 1.1185 14.2811 29 6 3.1903 0.9854 9.6712 30 1 -0.3633 -1.0238 0.0891 31 1 -0.3634 0.5892 0.8420 32 1 -0.3633 0.4347 -0.9312 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9999 0.9050 0.7146 36 1 3.8524 0.9572 -1.0585 37 1 3.9281 2.4719 -0.1273 38 1 2.9773 3.7116 1.0161 39 1 1.3339 3.9866 0.3902 40 1 1.6321 4.0022 2.1448 41 1 3.3949 1.7317 2.3701 42 1 2.2110 0.4026 2.3617 43 1 0.6650 1.7710 3.7350 44 1 1.8490 3.1002 3.7433 45 1 3.1232 0.7691 4.7006 46 1 1.0333 2.9010 7.8061 47 1 0.5800 2.0591 9.3089 48 1 2.7449 4.1907 8.9910 49 1 1.1939 4.3716 9.8466 50 1 3.0219 3.9350 11.4519 51 1 1.8726 2.5761 11.4305 52 1 6.6469 -0.2556 10.4109 53 1 2.5140 0.4015 10.2958 54 1 4.0047 0.3519 9.3197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328006233.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:22 Heat of formation + Delta-G solvation = -77.207102 kcal Electronic energy + Delta-G solvation = -30595.662555 eV Core-core repulsion = 26567.071007 eV Total energy + Delta-G solvation = -4028.591548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96625 -40.14231 -39.52707 -38.52287 -36.41678 -35.15421 -33.99320 -33.44288 -31.55583 -31.01683 -29.86111 -27.73621 -26.94808 -26.48499 -24.83700 -23.84765 -23.49808 -22.93555 -21.76671 -20.68787 -20.07716 -18.83803 -18.19502 -17.98215 -17.34870 -17.09964 -16.81369 -16.50507 -16.26561 -15.90499 -15.56598 -15.39209 -15.35875 -14.84762 -14.69374 -14.58874 -14.56932 -14.42402 -14.18791 -13.90602 -13.70073 -13.47346 -13.10469 -13.03684 -12.87851 -12.84055 -12.68703 -12.50877 -12.48124 -12.30108 -12.16902 -12.07123 -11.97901 -11.71740 -11.60190 -11.55935 -11.34990 -11.15167 -10.98536 -10.55804 -10.34570 -9.96986 -9.54982 -9.25103 -8.12484 -6.28777 0.35304 1.30235 1.42086 1.42407 1.52904 2.15682 2.40638 2.50578 3.03147 3.16268 3.33432 3.76677 3.86700 4.00593 4.15616 4.19404 4.20029 4.27115 4.34536 4.37288 4.53566 4.54482 4.58794 4.59767 4.68356 4.73052 4.74885 4.81044 4.82315 4.83296 4.91560 5.00273 5.05587 5.10016 5.11686 5.16152 5.23328 5.23988 5.26775 5.28019 5.39137 5.40417 5.53531 5.56348 5.57971 5.83256 5.93027 5.97364 6.06484 6.14291 6.29535 6.44725 6.74164 6.83240 6.98397 7.40961 8.91656 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.002218 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.695911 B =12618.898809 C =13400.101442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.082 3.918 4 H 0.090 0.910 5 C -0.187 4.187 6 N -0.532 5.532 7 C 0.015 3.985 8 C 0.043 3.957 9 C 0.124 3.876 10 N -0.686 5.686 11 C 0.523 3.477 12 O -0.517 6.517 13 C 0.485 3.515 14 O -0.559 6.559 15 N -0.573 5.573 16 C 0.045 3.955 17 C -0.122 4.122 18 C -0.107 4.107 19 C 0.040 3.960 20 H -0.010 1.010 21 C -0.535 4.535 22 H 0.062 0.938 23 C 0.011 3.989 24 N -0.915 5.915 25 Si 0.959 3.041 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.265 1.265 29 C 0.120 3.880 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.031 0.969 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.417 0.583 46 H 0.161 0.839 47 H 0.070 0.930 48 H 0.047 0.953 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.261 0.739 53 H 0.043 0.957 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.469 3.865 -22.652 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.026 4.026 4 H 0.109 0.891 5 C -0.246 4.246 6 N -0.256 5.256 7 C -0.133 4.133 8 C -0.085 4.085 9 C 0.001 3.999 10 N -0.338 5.338 11 C 0.305 3.695 12 O -0.396 6.396 13 C 0.267 3.733 14 O -0.439 6.439 15 N -0.304 5.304 16 C -0.075 4.075 17 C -0.160 4.160 18 C -0.145 4.145 19 C 0.020 3.980 20 H 0.008 0.992 21 C -0.574 4.574 22 H 0.080 0.920 23 C -0.189 4.189 24 N -0.553 5.553 25 Si 0.784 3.216 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.189 1.189 29 C -0.002 4.002 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.254 0.746 46 H 0.176 0.824 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.117 0.883 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.062 0.938 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.065 3.808 -22.660 25.503 hybrid contribution 2.144 -0.761 0.918 2.454 sum -8.921 3.047 -21.741 23.697 Atomic orbital electron populations 1.21644 0.95305 1.01069 1.02060 1.21627 0.96707 0.95024 1.02128 1.21799 0.93533 0.95746 0.91499 0.89142 1.22467 0.97175 1.02085 1.02834 1.62082 1.57491 1.03745 1.02291 1.22541 0.99844 0.87673 1.03272 1.22236 0.96444 1.00703 0.89102 1.21520 0.97392 0.98012 0.82993 1.45684 1.38551 1.45270 1.04288 1.19893 0.83219 0.81814 0.84597 1.90226 1.31226 1.35044 1.83140 1.20457 0.83701 0.83936 0.85183 1.90734 1.35462 1.32240 1.85453 1.48485 1.35877 1.40546 1.05517 1.23452 0.88567 0.88839 1.06655 1.21864 1.00487 0.97520 0.96156 1.21565 0.97510 0.98416 0.96996 1.18980 0.92766 0.92132 0.94078 0.99179 1.21485 1.15862 1.26944 0.93069 0.91963 1.25881 0.97348 0.96598 0.99031 1.70053 1.26901 1.33675 1.24696 0.85538 0.77415 0.78810 0.79798 1.19999 1.21171 1.18902 1.22050 0.94676 0.98555 0.84896 0.93353 0.92484 0.92770 0.90830 0.92315 0.92713 0.91119 0.92564 0.95023 0.90252 0.91260 0.93367 0.89152 0.90206 0.90766 0.74601 0.82358 0.91158 0.93409 0.88344 0.92805 0.92507 0.92945 0.93819 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.86 71.98 0.71 -1.05 16 2 C -0.12 -1.33 5.34 30.59 0.16 -1.16 16 3 C 0.08 0.92 2.31 44.91 0.10 1.03 16 4 H 0.09 0.93 8.07 -2.38 -0.02 0.91 16 5 C -0.19 -2.04 8.46 71.98 0.61 -1.43 16 6 N -0.53 -7.05 4.09 -897.06 -3.67 -10.72 16 7 C 0.01 0.18 9.19 127.69 1.17 1.35 16 8 C 0.04 0.64 4.02 86.31 0.35 0.99 16 9 C 0.12 2.33 5.61 86.38 0.48 2.81 16 10 N -0.69 -16.86 5.55 -464.39 -2.58 -19.44 16 11 C 0.52 16.84 7.81 87.27 0.68 17.52 16 12 O -0.52 -16.78 13.01 -3.25 -0.04 -16.82 16 13 C 0.48 19.95 7.76 87.27 0.68 20.63 16 14 O -0.56 -26.38 15.92 -3.27 -0.05 -26.43 16 15 N -0.57 -24.42 2.97 -819.63 -2.43 -26.85 16 16 C 0.04 1.56 6.27 86.36 0.54 2.10 16 17 C -0.12 -4.15 6.08 30.67 0.19 -3.97 16 18 C -0.11 -4.37 5.10 30.62 0.16 -4.22 16 19 C 0.04 2.04 2.26 -11.32 -0.03 2.01 16 20 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 21 C -0.54 -29.58 8.56 25.60 0.22 -29.36 16 22 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 23 C 0.01 0.61 5.30 84.65 0.45 1.06 16 24 N -0.91 -54.68 11.41 21.45 0.24 -54.44 16 25 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 29 C 0.12 6.07 5.42 86.51 0.47 6.53 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.85 7.62 -2.39 -0.02 0.83 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.74 6.16 -2.39 -0.01 0.73 16 35 H 0.05 0.68 6.55 -2.39 -0.02 0.66 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.63 6.67 -2.39 -0.02 0.62 16 38 H 0.03 0.38 6.59 -2.38 -0.02 0.36 16 39 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 40 H 0.07 0.90 6.27 -2.39 -0.01 0.89 16 41 H 0.05 0.71 6.83 -2.39 -0.02 0.70 16 42 H 0.09 1.30 6.00 -2.39 -0.01 1.28 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.43 6.46 -2.39 -0.02 1.41 16 45 H 0.42 9.79 7.96 -92.71 -0.74 9.05 16 46 H 0.16 5.25 3.71 -85.65 -0.32 4.93 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 50 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 52 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 53 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 54 H 0.08 5.00 5.17 -2.39 -0.01 4.98 16 Total: -1.00 -66.79 409.09 0.30 -66.50 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.15 Total: 27.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.94 Total: 14.85 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -8.43 Total: -111.44 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.09 Total: -43.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.79 0.30 -66.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328006233.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.711 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds