Wall clock time and date at job start Tue Mar 31 2020 23:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47027 * 2 1 4 4 H 1.09001 * 109.47068 * 54.99823 * 3 2 1 5 5 C 1.53002 * 109.47209 * 174.99555 * 3 2 1 6 6 N 1.46895 * 109.47129 * 294.99851 * 3 2 1 7 7 C 1.46900 * 110.99926 * 298.95247 * 6 3 2 8 8 C 1.46905 * 111.00150 * 175.00233 * 6 3 2 9 9 C 1.52995 * 109.47402 * 189.99774 * 8 6 3 10 10 N 1.46490 * 109.47310 * 179.97438 * 9 8 6 11 11 C 1.34779 * 120.00582 * 179.97438 * 10 9 8 12 12 O 1.21355 * 119.99166 * 0.02562 * 11 10 9 13 13 C 1.49443 * 120.00568 * 180.02562 * 11 10 9 14 14 O 1.21353 * 120.00035 * 6.39894 * 13 11 10 15 15 N 1.34774 * 119.99983 * 186.39578 * 13 11 10 16 16 C 1.46929 * 120.63323 * 7.08113 * 15 13 11 17 17 C 1.53192 * 108.77489 * 233.58746 * 16 15 13 18 18 C 1.53043 * 109.30998 * 305.35998 * 17 16 15 19 19 C 1.53042 * 109.53638 * 61.37231 * 18 17 16 20 20 H 1.08992 * 109.50139 * 58.58389 * 19 18 17 21 21 C 1.50699 * 109.49448 * 178.68234 * 19 18 17 22 22 H 1.08004 * 120.00602 * 34.61327 * 21 19 18 23 23 C 1.37885 * 119.99714 * 214.61541 * 21 19 18 24 24 N 1.31515 * 119.99913 * 175.11407 * 23 21 19 25 25 Si 1.86795 * 120.00074 * 355.10991 * 23 21 19 26 26 H 1.48498 * 109.47335 * 95.26098 * 25 23 21 27 27 H 1.48502 * 109.47333 * 215.26497 * 25 23 21 28 28 H 1.48504 * 109.47222 * 335.26455 * 25 23 21 29 29 C 1.46925 * 120.63007 * 186.80100 * 15 13 11 30 30 H 1.08995 * 109.47605 * 300.00120 * 1 2 3 31 31 H 1.09006 * 109.46914 * 60.00061 * 1 2 3 32 32 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46914 * 119.99939 * 2 1 3 34 34 H 1.08995 * 109.47605 * 239.99880 * 2 1 3 35 35 H 1.08999 * 109.47305 * 300.00546 * 5 3 2 36 36 H 1.09002 * 109.46924 * 59.99605 * 5 3 2 37 37 H 1.08993 * 109.47311 * 179.97438 * 5 3 2 38 38 H 1.09004 * 109.47227 * 60.00326 * 7 6 3 39 39 H 1.09004 * 109.47024 * 180.02562 * 7 6 3 40 40 H 1.09004 * 109.47293 * 299.99848 * 7 6 3 41 41 H 1.09004 * 109.46610 * 310.00291 * 8 6 3 42 42 H 1.08997 * 109.46808 * 69.99476 * 8 6 3 43 43 H 1.08995 * 109.47063 * 299.99932 * 9 8 6 44 44 H 1.09007 * 109.46893 * 59.99861 * 9 8 6 45 45 H 0.97008 * 120.00265 * 0.02562 * 10 9 8 46 46 H 1.08995 * 109.58262 * 353.37448 * 16 15 13 47 47 H 1.09003 * 109.58509 * 113.65575 * 16 15 13 48 48 H 1.08997 * 109.50364 * 65.31299 * 17 16 15 49 49 H 1.09005 * 109.49513 * 185.41776 * 17 16 15 50 50 H 1.09004 * 109.46066 * 181.38893 * 18 17 16 51 51 H 1.09002 * 109.46487 * 301.35956 * 18 17 16 52 52 H 0.96998 * 119.99827 * 179.97438 * 24 23 21 53 53 H 1.09004 * 109.58870 * 246.20670 * 29 15 13 54 54 H 1.09004 * 109.58630 * 6.62925 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 7 1.6514 2.0992 -1.2552 7 6 2.2407 1.4131 -2.4127 8 6 2.0208 3.5210 -1.2418 9 6 1.3865 4.2241 -2.4435 10 7 1.7544 5.6420 -2.4298 11 6 1.3072 6.4638 -3.4000 12 8 0.5993 6.0291 -4.2847 13 6 1.6830 7.9101 -3.3864 14 8 2.4824 8.3217 -2.5714 15 7 1.1341 8.7574 -4.2793 16 6 0.0536 8.3107 -5.1690 17 6 0.4481 8.6184 -6.6169 18 6 0.7921 10.1044 -6.7428 19 6 1.9818 10.4328 -5.8379 20 1 2.8352 9.8168 -6.1210 21 6 2.3402 11.8889 -5.9870 22 1 1.5647 12.6215 -6.1556 23 6 3.6582 12.2860 -5.9081 24 7 3.9816 13.5407 -6.1334 25 14 4.9846 11.0419 -5.4812 26 1 5.5924 10.5179 -6.7306 27 1 6.0323 11.6980 -4.6582 28 1 4.3835 9.9206 -4.7152 29 6 1.6008 10.1471 -4.3773 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8531 0.9570 1.0572 36 1 3.9995 0.9053 -0.7159 37 1 3.9281 2.4720 0.1254 38 1 1.8949 0.3797 -2.4374 39 1 1.9374 1.9201 -3.3288 40 1 3.3276 1.4308 -2.3310 41 1 1.6623 3.9808 -0.3208 42 1 3.1053 3.6151 -1.2966 43 1 1.7450 3.7643 -3.3644 44 1 0.3019 4.1300 -2.3887 45 1 2.3206 5.9895 -1.7229 46 1 -0.0964 7.2375 -5.0513 47 1 -0.8671 8.8379 -4.9190 48 1 1.3160 8.0195 -6.8927 49 1 -0.3843 8.3804 -7.2792 50 1 1.0494 10.3312 -7.7775 51 1 -0.0681 10.7030 -6.4430 52 1 4.9087 13.8202 -6.0775 53 1 0.8043 10.8229 -4.0656 54 1 2.4720 10.2861 -3.7371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328006234.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:26 Heat of formation + Delta-G solvation = -79.164730 kcal Electronic energy + Delta-G solvation = -30446.680732 eV Core-core repulsion = 26418.004295 eV Total energy + Delta-G solvation = -4028.676437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.04571 -40.17384 -39.58726 -38.64083 -36.53586 -35.16579 -33.97107 -33.54055 -32.17375 -30.81654 -29.90563 -27.85015 -27.09255 -26.67809 -24.93427 -23.91336 -23.43830 -22.58907 -21.67856 -20.59644 -20.32056 -19.19979 -18.53463 -18.16859 -17.53462 -17.21445 -16.60114 -16.47913 -16.29649 -15.98597 -15.60232 -15.48009 -15.42177 -15.02086 -14.89646 -14.70160 -14.57308 -14.49349 -14.24633 -14.04054 -13.74455 -13.61456 -13.17855 -13.07930 -13.04392 -12.90543 -12.79188 -12.60314 -12.34677 -12.23585 -12.08806 -12.08008 -12.04279 -11.69151 -11.67230 -11.57550 -11.37479 -11.26912 -11.15488 -10.80631 -10.37649 -10.05328 -9.69453 -9.25822 -8.35760 -6.38434 0.27117 1.22035 1.26424 1.32281 1.43425 2.06809 2.27950 2.39809 2.98820 3.02546 3.29092 3.75200 3.88606 3.99943 4.04917 4.14931 4.15532 4.23309 4.30610 4.37700 4.45009 4.49563 4.53093 4.53892 4.58851 4.65573 4.71963 4.74153 4.80301 4.81982 4.85788 4.89940 4.95034 4.97953 5.03822 5.08129 5.15557 5.20211 5.23157 5.26075 5.28497 5.39929 5.44028 5.55336 5.56477 5.60111 5.65132 5.94193 6.05829 6.12468 6.25009 6.31982 6.65029 6.72053 6.87965 7.27741 8.80517 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.002234 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.336587 B =12532.612719 C =13361.776507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.084 0.916 5 C -0.187 4.187 6 N -0.532 5.532 7 C 0.010 3.990 8 C 0.047 3.953 9 C 0.124 3.876 10 N -0.685 5.685 11 C 0.521 3.479 12 O -0.516 6.516 13 C 0.489 3.511 14 O -0.560 6.560 15 N -0.575 5.575 16 C 0.051 3.949 17 C -0.122 4.122 18 C -0.103 4.103 19 C 0.007 3.993 20 H 0.024 0.976 21 C -0.510 4.510 22 H 0.044 0.956 23 C 0.022 3.978 24 N -0.940 5.940 25 Si 0.931 3.069 26 H -0.269 1.269 27 H -0.285 1.285 28 H -0.257 1.257 29 C 0.117 3.883 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.418 0.582 46 H 0.158 0.842 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.099 0.901 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.267 0.733 53 H 0.069 0.931 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -30.422 12.034 33.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.028 4.028 4 H 0.102 0.898 5 C -0.246 4.246 6 N -0.256 5.256 7 C -0.138 4.138 8 C -0.081 4.081 9 C 0.001 3.999 10 N -0.338 5.338 11 C 0.302 3.698 12 O -0.395 6.395 13 C 0.272 3.728 14 O -0.440 6.440 15 N -0.307 5.307 16 C -0.069 4.069 17 C -0.160 4.160 18 C -0.141 4.141 19 C -0.013 4.013 20 H 0.042 0.958 21 C -0.548 4.548 22 H 0.062 0.938 23 C -0.177 4.177 24 N -0.579 5.579 25 Si 0.757 3.243 26 H -0.194 1.194 27 H -0.212 1.212 28 H -0.181 1.181 29 C -0.005 4.005 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.255 0.745 46 H 0.174 0.826 47 H 0.093 0.907 48 H 0.071 0.929 49 H 0.117 0.883 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.076 0.924 53 H 0.087 0.913 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.633 -30.442 11.789 33.312 hybrid contribution 2.160 0.804 0.411 2.341 sum -4.473 -29.638 12.200 32.361 Atomic orbital electron populations 1.21640 0.95353 1.01053 1.01995 1.21609 0.96590 0.94613 1.02391 1.21823 0.93524 0.95897 0.91536 0.89798 1.22466 0.97218 1.02029 1.02861 1.62096 1.59207 1.00951 1.03355 1.22604 0.97578 1.00363 0.93262 1.22179 0.98573 0.89264 0.98089 1.21505 1.01309 0.77514 0.99577 1.45681 1.50968 1.09921 1.27211 1.19843 0.80668 0.86569 0.82711 1.90305 1.37378 1.75960 1.35831 1.20460 0.82399 0.87851 0.82069 1.90714 1.36060 1.78627 1.38581 1.48449 1.35872 1.11497 1.34834 1.23360 0.87814 1.06909 0.88848 1.21867 1.02081 0.95697 0.96397 1.21510 0.97527 0.95748 0.99290 1.19509 0.95697 0.94561 0.91543 0.95773 1.21160 0.92856 0.92446 1.48346 0.93795 1.25812 1.00871 0.96590 0.94419 1.70021 1.19135 1.18005 1.50759 0.85973 0.79303 0.80121 0.78952 1.19448 1.21155 1.18144 1.22294 0.99034 0.79372 0.99786 0.93202 0.92576 0.92988 0.90927 0.91651 0.91218 0.92297 0.92852 0.90155 0.91392 0.94867 0.89150 0.93386 0.90936 0.90060 0.74463 0.82595 0.90656 0.92903 0.88273 0.92773 0.92442 0.92401 0.91286 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.80 71.98 0.71 -0.71 16 2 C -0.11 -0.99 5.22 30.59 0.16 -0.83 16 3 C 0.08 0.78 2.34 44.92 0.11 0.88 16 4 H 0.08 0.84 8.03 -2.39 -0.02 0.82 16 5 C -0.19 -1.72 8.50 71.98 0.61 -1.10 16 6 N -0.53 -6.10 4.20 -897.03 -3.77 -9.87 16 7 C 0.01 0.10 8.63 127.69 1.10 1.21 16 8 C 0.05 0.57 4.51 86.30 0.39 0.96 16 9 C 0.12 1.97 5.60 86.38 0.48 2.45 16 10 N -0.69 -14.18 5.55 -464.44 -2.58 -16.76 16 11 C 0.52 14.57 7.78 87.27 0.68 15.25 16 12 O -0.52 -14.98 13.10 -3.26 -0.04 -15.02 16 13 C 0.49 17.34 7.74 87.27 0.68 18.02 16 14 O -0.56 -22.59 15.94 -3.26 -0.05 -22.64 16 15 N -0.58 -21.16 2.97 -819.63 -2.43 -23.59 16 16 C 0.05 1.52 6.27 86.36 0.54 2.07 16 17 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 18 C -0.10 -3.94 5.15 30.62 0.16 -3.78 16 19 C 0.01 0.31 1.79 -11.32 -0.02 0.29 16 20 H 0.02 1.17 5.61 -2.39 -0.01 1.16 16 21 C -0.51 -28.65 8.86 25.60 0.23 -28.42 16 22 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 23 C 0.02 1.26 5.47 84.66 0.46 1.72 16 24 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 25 Si 0.93 46.19 26.63 68.60 1.83 48.01 16 26 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.26 -12.66 5.97 99.48 0.59 -12.06 16 29 C 0.12 5.10 5.52 86.51 0.48 5.58 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.69 7.75 -2.38 -0.02 0.67 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.56 6.17 -2.39 -0.01 0.55 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.57 6.39 -2.39 -0.02 0.55 16 37 H 0.05 0.55 6.75 -2.39 -0.02 0.53 16 38 H 0.08 0.77 6.22 -2.38 -0.01 0.75 16 39 H 0.07 0.80 6.30 -2.38 -0.02 0.78 16 40 H 0.03 0.36 6.28 -2.38 -0.01 0.34 16 41 H 0.09 0.98 8.00 -2.39 -0.02 0.96 16 42 H 0.05 0.57 6.94 -2.39 -0.02 0.56 16 43 H 0.07 1.23 6.47 -2.39 -0.02 1.21 16 44 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.42 7.92 7.96 -92.70 -0.74 7.19 16 46 H 0.16 4.50 3.78 -78.83 -0.30 4.20 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 50 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 53 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 54 H 0.06 2.83 5.94 -2.39 -0.01 2.81 16 Total: -1.00 -68.36 406.32 -0.05 -68.40 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.24 Total: 19.62 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.94 Total: 10.01 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -8.48 Total: -108.39 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.09 Total: -37.67 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.83 Total: 48.01 kcal Total: -68.36 -0.05 -68.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328006234.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.761 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds