Wall clock time and date at job start Wed Apr 1 2020 00:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47267 * 2 1 4 4 N 1.46901 * 109.47098 * 174.79208 * 3 2 1 5 5 C 1.46909 * 110.99780 * 200.03192 * 4 3 2 6 6 C 1.53005 * 109.46892 * 76.18726 * 5 4 3 7 7 C 1.46897 * 111.00006 * 76.07951 * 4 3 2 8 8 C 1.53001 * 109.46949 * 189.99963 * 7 4 3 9 9 N 1.46500 * 109.46915 * 179.97438 * 8 7 4 10 10 C 1.34772 * 120.00229 * 179.97438 * 9 8 7 11 11 O 1.21354 * 119.99821 * 0.02562 * 10 9 8 12 12 C 1.49447 * 120.00481 * 179.97438 * 10 9 8 13 13 O 1.21350 * 119.99676 * 6.47300 * 12 10 9 14 14 N 1.34771 * 120.00482 * 186.47085 * 12 10 9 15 15 C 1.46927 * 120.62938 * 8.50433 * 14 12 10 16 16 C 1.53631 * 108.54472 * 126.36851 * 15 14 12 17 17 C 1.53044 * 109.23756 * 54.85964 * 16 15 14 18 18 C 1.53042 * 109.53791 * 298.50838 * 17 16 15 19 19 H 1.09002 * 109.49971 * 301.42166 * 18 17 16 20 20 C 1.50698 * 109.52288 * 181.33581 * 18 17 16 21 21 H 1.07991 * 120.00034 * 0.15014 * 20 18 17 22 22 C 1.37880 * 119.99852 * 180.14834 * 20 18 17 23 23 N 1.31515 * 119.99885 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 119.99939 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47212 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47243 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.47178 * 239.99688 * 24 22 20 28 28 C 1.46927 * 120.63608 * 188.78851 * 14 12 10 29 29 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47030 * 299.99619 * 1 2 3 31 31 H 1.09004 * 109.47201 * 59.99694 * 1 2 3 32 32 H 1.09007 * 109.46971 * 240.00128 * 2 1 3 33 33 H 1.09004 * 109.47201 * 120.00306 * 2 1 3 34 34 H 1.08996 * 109.47376 * 294.79319 * 3 2 1 35 35 H 1.09001 * 109.47163 * 54.79533 * 3 2 1 36 36 H 1.09002 * 109.46544 * 196.18482 * 5 4 3 37 37 H 1.08995 * 109.46805 * 316.18345 * 5 4 3 38 38 H 1.08995 * 109.46790 * 184.70814 * 6 5 4 39 39 H 1.08996 * 109.46979 * 304.70883 * 6 5 4 40 40 H 1.08994 * 109.47147 * 64.71164 * 6 5 4 41 41 H 1.08995 * 109.46948 * 310.00167 * 7 4 3 42 42 H 1.09000 * 109.47286 * 69.99926 * 7 4 3 43 43 H 1.08996 * 109.47182 * 299.99420 * 8 7 4 44 44 H 1.09000 * 109.47156 * 59.99884 * 8 7 4 45 45 H 0.97007 * 119.99962 * 0.02562 * 9 8 7 46 46 H 1.08997 * 109.59056 * 246.20292 * 15 14 12 47 47 H 1.09004 * 109.58557 * 6.62815 * 15 14 12 48 48 H 1.08995 * 109.63169 * 294.86934 * 16 15 14 49 49 H 1.09002 * 109.43180 * 174.72687 * 16 15 14 50 50 H 1.09000 * 109.45381 * 178.49687 * 17 16 15 51 51 H 1.08990 * 109.45213 * 58.52540 * 17 16 15 52 52 H 0.97004 * 119.99710 * 179.97438 * 23 22 20 53 53 H 1.09000 * 109.58150 * 353.36925 * 28 14 12 54 54 H 1.08998 * 109.58836 * 113.65152 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5037 1.4443 0.1257 5 6 3.9896 2.7472 0.5996 6 6 3.7213 2.8764 2.1004 7 6 4.1416 1.0749 -1.1449 8 6 5.6369 0.8445 -0.9167 9 7 6.2730 0.4756 -2.1837 10 6 7.5964 0.2239 -2.2252 11 8 8.2610 0.3024 -1.2129 12 6 8.2453 -0.1531 -3.5176 13 8 7.6075 -0.1187 -4.5494 14 7 9.5387 -0.5312 -3.5373 15 6 10.2716 -0.7574 -2.2841 16 6 10.8943 -2.1612 -2.3288 17 6 11.7511 -2.2928 -3.5900 18 6 10.8691 -2.1178 -4.8285 19 1 10.0793 -2.8690 -4.8217 20 6 11.7071 -2.2801 -6.0705 21 1 12.7630 -2.4897 -5.9858 22 6 11.1254 -2.1608 -7.3149 23 7 9.8395 -1.9050 -7.4179 24 14 12.1639 -2.3626 -8.8544 25 1 13.5705 -2.6426 -8.4695 26 1 11.6372 -3.4918 -9.6624 27 1 12.1097 -1.1133 -9.6554 28 6 10.2446 -0.7191 -4.8121 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.7549 1.9287 -0.9329 35 1 1.6026 1.9825 0.8397 36 1 5.0610 2.8246 0.4141 37 1 3.4702 3.5441 0.0676 38 1 4.0050 3.8739 2.4356 39 1 2.6609 2.7156 2.2950 40 1 4.3067 2.1317 2.6396 41 1 3.6874 0.1609 -1.5273 42 1 4.0041 1.8790 -1.8678 43 1 6.0911 1.7586 -0.5344 44 1 5.7745 0.0405 -0.1938 45 1 5.7418 0.4131 -2.9931 46 1 11.0574 -0.0093 -2.1801 47 1 9.5841 -0.6878 -1.4410 48 1 10.1043 -2.9119 -2.3456 49 1 11.5187 -2.3091 -1.4477 50 1 12.2161 -3.2784 -3.6118 51 1 12.5255 -1.5259 -3.5844 52 1 9.4304 -1.8208 -8.2934 53 1 9.5392 -0.6242 -5.6377 54 1 11.0265 0.0338 -4.9112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328998780.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:24 Heat of formation + Delta-G solvation = -86.814476 kcal Electronic energy + Delta-G solvation = -30217.778013 eV Core-core repulsion = 26188.769858 eV Total energy + Delta-G solvation = -4029.008155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93333 -39.99522 -39.21444 -38.50418 -36.29702 -35.15253 -34.38276 -33.45958 -31.97105 -31.56492 -29.77077 -27.62756 -26.84667 -26.12126 -24.62055 -23.54933 -23.34504 -22.45300 -21.78013 -21.29001 -20.42383 -18.83553 -18.24534 -17.97427 -17.22398 -17.14091 -16.63250 -16.52506 -16.20772 -16.18770 -15.61161 -15.50218 -15.36687 -15.04425 -14.78303 -14.69082 -14.58713 -14.37435 -14.06310 -13.90611 -13.50109 -13.38962 -13.11024 -12.96165 -12.88860 -12.86474 -12.72084 -12.47734 -12.40977 -12.29402 -12.29234 -12.15393 -11.93129 -11.75126 -11.63912 -11.51025 -11.39727 -11.13351 -10.98036 -10.55022 -10.37084 -10.08870 -9.54374 -9.35244 -8.11415 -6.28126 0.35552 1.30283 1.41520 1.42678 1.54456 2.13832 2.40654 2.48913 2.96806 3.16706 3.34943 3.73420 3.95382 3.97608 4.13077 4.17218 4.17674 4.22476 4.33699 4.39841 4.45585 4.55115 4.59224 4.60975 4.64686 4.70146 4.73865 4.79342 4.82132 4.85862 4.92101 4.93030 5.03719 5.06490 5.09682 5.15514 5.23456 5.24031 5.26712 5.31629 5.34761 5.40430 5.45498 5.49076 5.57665 5.84559 5.94096 5.98000 6.04737 6.11897 6.30327 6.43209 6.72260 6.84029 6.98360 7.41676 8.92481 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.002117 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.903593 B =13225.477169 C =14079.294155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.056 3.944 4 N -0.541 5.541 5 C 0.040 3.960 6 C -0.142 4.142 7 C 0.048 3.952 8 C 0.124 3.876 9 N -0.688 5.688 10 C 0.521 3.479 11 O -0.522 6.522 12 C 0.485 3.515 13 O -0.557 6.557 14 N -0.577 5.577 15 C 0.071 3.929 16 C -0.126 4.126 17 C -0.106 4.106 18 C 0.039 3.961 19 H -0.011 1.011 20 C -0.534 4.534 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.914 5.914 24 Si 0.959 3.041 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.120 3.880 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.417 0.583 46 H 0.074 0.926 47 H 0.139 0.861 48 H 0.048 0.952 49 H 0.100 0.900 50 H 0.054 0.946 51 H 0.057 0.943 52 H 0.261 0.739 53 H 0.086 0.914 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.415 8.599 18.924 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.071 4.071 4 N -0.266 5.266 5 C -0.088 4.088 6 C -0.199 4.199 7 C -0.080 4.080 8 C 0.002 3.998 9 N -0.341 5.341 10 C 0.302 3.698 11 O -0.400 6.400 12 C 0.268 3.732 13 O -0.436 6.436 14 N -0.308 5.308 15 C -0.050 4.050 16 C -0.164 4.164 17 C -0.144 4.144 18 C 0.019 3.981 19 H 0.008 0.992 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.190 4.190 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.186 1.186 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.001 4.001 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.254 0.746 46 H 0.092 0.908 47 H 0.156 0.844 48 H 0.067 0.933 49 H 0.118 0.882 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.070 0.930 53 H 0.104 0.896 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.290 8.365 19.348 26.041 hybrid contribution 0.043 0.329 -2.378 2.401 sum -15.247 8.694 16.970 24.414 Atomic orbital electron populations 1.21717 0.94845 1.02085 1.02050 1.21499 0.95962 0.96058 1.02183 1.22231 0.86089 0.97718 1.01092 1.61910 1.06579 1.30453 1.27696 1.22273 1.00575 0.88935 0.97003 1.21727 1.01990 1.01857 0.94346 1.22188 0.92452 1.01958 0.91445 1.21508 0.92629 1.01602 0.84086 1.45682 1.07153 1.67324 1.13897 1.19877 0.83566 0.78284 0.88076 1.90456 1.62284 1.51576 1.35698 1.20510 0.83310 0.79764 0.89627 1.90747 1.63064 1.54262 1.35522 1.48463 1.09823 1.62551 1.09966 1.23021 0.98302 0.97109 0.86558 1.22005 0.99392 0.96140 0.98836 1.21549 0.97845 1.00902 0.94102 1.18906 0.93902 0.91524 0.93735 0.99247 1.21512 0.95622 1.48855 0.91264 0.91924 1.25892 0.95984 0.94623 1.02452 1.70072 1.11609 1.49011 1.24558 0.85484 0.79276 0.77547 0.79228 1.18627 1.20842 1.20724 1.21957 0.95673 0.98574 0.83910 0.92399 0.92124 0.92701 0.92644 0.91695 0.94413 0.89762 0.90798 0.94142 0.91461 0.92355 0.92613 0.89282 0.93380 0.90688 0.90397 0.74593 0.90815 0.84446 0.93273 0.88159 0.92735 0.92384 0.92978 0.89598 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.45 5.97 30.59 0.18 -1.26 16 3 C 0.06 0.67 4.81 86.30 0.41 1.09 16 4 N -0.54 -7.63 4.36 -896.22 -3.91 -11.54 16 5 C 0.04 0.51 5.55 86.30 0.48 0.99 16 6 C -0.14 -1.58 10.07 71.98 0.73 -0.85 16 7 C 0.05 0.72 4.90 86.30 0.42 1.15 16 8 C 0.12 2.39 5.65 86.38 0.49 2.88 16 9 N -0.69 -17.02 5.55 -464.42 -2.58 -19.60 16 10 C 0.52 16.82 7.75 87.27 0.68 17.50 16 11 O -0.52 -17.12 13.17 -3.26 -0.04 -17.16 16 12 C 0.49 19.98 7.73 87.27 0.67 20.66 16 13 O -0.56 -26.44 15.93 -3.25 -0.05 -26.50 16 14 N -0.58 -24.46 2.97 -819.63 -2.43 -26.89 16 15 C 0.07 2.44 6.02 86.51 0.52 2.96 16 16 C -0.13 -4.21 6.10 30.82 0.19 -4.03 16 17 C -0.11 -4.30 5.11 30.62 0.16 -4.14 16 18 C 0.04 1.97 2.25 -11.46 -0.03 1.95 16 19 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 20 C -0.53 -29.44 8.57 25.60 0.22 -29.22 16 21 H 0.06 3.33 7.74 -2.92 -0.02 3.31 16 22 C 0.01 0.56 5.30 84.66 0.45 1.01 16 23 N -0.91 -54.69 11.39 21.45 0.24 -54.45 16 24 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 C 0.12 6.05 5.41 86.36 0.47 6.52 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.74 6.97 -2.38 -0.02 0.73 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.04 0.45 7.99 -2.39 -0.02 0.43 16 35 H 0.08 0.89 6.47 -2.39 -0.02 0.87 16 36 H 0.07 1.03 5.87 -2.39 -0.01 1.01 16 37 H 0.04 0.49 7.99 -2.39 -0.02 0.47 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.60 6.69 -2.39 -0.02 0.58 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 1.31 6.74 -2.39 -0.02 1.29 16 42 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 43 H 0.07 1.45 6.25 -2.39 -0.01 1.43 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.42 9.82 7.96 -92.70 -0.74 9.08 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.14 4.52 4.30 -49.14 -0.21 4.31 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 53 H 0.09 5.03 5.12 -2.39 -0.01 5.02 16 54 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -67.21 415.82 -0.05 -67.26 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.06 Total: 26.44 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.75 Total: 16.42 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -8.67 Total: -112.48 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.09 Total: -43.65 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.21 -0.05 -67.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328998780.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.555 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds