Wall clock time and date at job start Tue Mar 31 2020 22:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09001 * 109.47235 * 54.99634 * 3 2 1 5 5 C 1.53010 * 109.46873 * 294.99486 * 3 2 1 6 6 C 1.50697 * 109.47307 * 174.99651 * 3 2 1 7 7 O 1.21280 * 120.00018 * 0.02562 * 6 3 2 8 8 N 1.34774 * 120.00040 * 179.97438 * 6 3 2 9 9 C 1.46506 * 119.99990 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.47257 * 180.02562 * 9 8 6 11 11 C 1.53513 * 114.16793 * 184.99879 * 10 9 8 12 12 N 1.47484 * 87.93060 * 220.32447 * 11 10 9 13 13 C 1.46895 * 110.99756 * 138.70311 * 12 11 10 14 14 C 1.50706 * 109.47182 * 170.00145 * 13 12 11 15 15 O 1.21283 * 119.99503 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.46492 * 120.00231 * 359.97438 * 16 14 13 18 18 C 1.53002 * 109.47540 * 90.00038 * 17 16 14 19 19 C 1.46506 * 119.99968 * 180.02562 * 16 14 13 20 20 C 1.50699 * 109.47352 * 89.99400 * 19 16 14 21 21 H 1.08000 * 119.99828 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00146 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00215 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47166 * 60.00152 * 24 22 20 26 26 H 1.48506 * 109.47069 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47159 * 299.99829 * 24 22 20 28 28 C 1.47477 * 87.83167 * 27.01125 * 12 11 10 29 29 H 1.08999 * 109.47413 * 300.00287 * 1 2 3 30 30 H 1.09004 * 109.46907 * 60.00564 * 1 2 3 31 31 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47134 * 239.99347 * 2 1 3 33 33 H 1.09004 * 109.46907 * 119.99436 * 2 1 3 34 34 H 1.09001 * 109.46855 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.47119 * 300.00523 * 5 3 2 36 36 H 1.08999 * 109.46931 * 60.00395 * 5 3 2 37 37 H 0.96997 * 120.00247 * 0.02562 * 8 6 3 38 38 H 1.08996 * 109.46964 * 59.99642 * 9 8 6 39 39 H 1.09002 * 109.46662 * 300.00006 * 9 8 6 40 40 H 1.09003 * 113.37778 * 318.07254 * 10 9 8 41 41 H 1.09005 * 113.47855 * 105.56322 * 11 10 9 42 42 H 1.08997 * 113.47719 * 335.09347 * 11 10 9 43 43 H 1.09001 * 109.47613 * 50.00491 * 13 12 11 44 44 H 1.08998 * 109.47678 * 290.00386 * 13 12 11 45 45 H 1.08999 * 109.47479 * 210.00762 * 17 16 14 46 46 H 1.09006 * 109.47080 * 330.00171 * 17 16 14 47 47 H 1.09000 * 109.46885 * 300.00184 * 18 17 16 48 48 H 1.09001 * 109.46388 * 60.00135 * 18 17 16 49 49 H 1.08990 * 109.47469 * 179.97438 * 18 17 16 50 50 H 1.08995 * 109.47161 * 210.00105 * 19 16 14 51 51 H 1.09002 * 109.46900 * 329.99415 * 19 16 14 52 52 H 0.97007 * 120.00044 * 180.02562 * 23 22 20 53 53 H 1.09000 * 113.48071 * 87.76093 * 28 12 11 54 54 H 1.09004 * 113.47566 * 218.21901 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3075 6 6 3.5419 1.4443 0.1239 7 8 4.1450 0.3952 0.2038 8 7 4.2149 2.6118 0.1449 9 6 5.6750 2.6136 0.2648 10 6 6.1850 4.0560 0.2649 11 6 7.7150 4.1818 0.2644 12 7 7.5702 5.2971 1.2185 13 6 8.5906 5.2239 2.2726 14 6 8.5712 6.4965 3.0798 15 8 7.7845 7.3774 2.8042 16 7 9.4241 6.6531 4.1115 17 6 10.3695 5.5862 4.4488 18 6 11.6720 5.7949 3.6737 19 6 9.4049 7.8900 4.8965 20 6 8.4400 7.7415 6.0445 21 1 7.8959 6.8180 6.1765 22 6 8.2528 8.7841 6.9269 23 7 8.9158 9.9085 6.7664 24 14 7.0573 8.5998 8.3504 25 1 7.4870 7.4713 9.2147 26 1 7.0378 9.8537 9.1460 27 1 5.6964 8.3284 7.8219 28 6 6.3065 4.6797 1.6623 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.9983 3.1543 -1.3073 35 1 2.0699 1.5873 -2.1492 36 1 0.5490 2.1252 -1.3971 37 1 3.7326 3.4509 0.0806 38 1 6.1093 2.0743 -0.5770 39 1 5.9636 2.1265 1.1962 40 1 5.6847 4.6917 -0.4657 41 1 8.1255 4.4849 -0.6988 42 1 8.2221 3.3135 0.6852 43 1 9.5734 5.0965 1.8189 44 1 8.3790 4.3767 2.9250 45 1 10.5759 5.6084 5.5188 46 1 9.9386 4.6211 4.1820 47 1 11.4656 5.7725 2.6036 48 1 12.1029 6.7599 3.9406 49 1 12.3756 5.0014 3.9250 50 1 10.4036 8.0895 5.2846 51 1 9.0897 8.7182 4.2618 52 1 8.7844 10.6420 7.3875 53 1 6.4378 3.9444 2.4561 54 1 5.5233 5.4047 1.8838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001377959878.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:08 Heat of formation + Delta-G solvation = -75.809130 kcal Electronic energy + Delta-G solvation = -29655.289948 eV Core-core repulsion = 25626.759021 eV Total energy + Delta-G solvation = -4028.530927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68635 -40.85239 -40.04783 -36.89347 -36.43845 -35.85997 -34.93083 -32.52897 -31.56899 -30.70494 -29.39175 -27.97652 -26.93042 -26.16791 -25.18786 -24.35417 -23.40503 -22.47245 -21.19367 -20.38893 -19.84461 -18.63194 -18.14498 -17.94843 -17.42870 -17.16071 -16.75629 -16.56934 -16.43872 -16.21631 -15.70914 -15.47607 -15.05268 -14.87969 -14.68933 -14.47161 -14.39107 -14.28659 -13.87958 -13.65644 -13.56153 -13.40429 -13.25113 -13.12248 -12.97845 -12.82800 -12.63803 -12.59704 -12.53095 -12.49902 -12.34657 -12.15697 -11.96550 -11.84119 -11.73497 -11.69565 -11.58982 -11.52013 -10.73934 -10.65415 -10.57783 -10.09154 -9.77518 -9.41426 -8.22928 -6.38154 1.34496 1.38923 1.46309 1.64875 1.88565 2.17458 2.26296 2.40915 3.04773 3.06444 3.32266 3.63248 3.73101 3.78314 3.87451 4.00346 4.06378 4.08763 4.17683 4.28454 4.31911 4.41705 4.42949 4.45871 4.52864 4.57790 4.62613 4.63297 4.70428 4.74580 4.79328 4.85642 4.93563 4.98322 4.98982 5.04271 5.04686 5.12502 5.17690 5.21492 5.22911 5.32105 5.37672 5.38264 5.46926 5.51638 5.57231 5.85175 5.98614 6.06429 6.54894 6.69867 6.84295 7.25168 7.28210 7.55731 8.83764 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.002133 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.553491 B =13125.841112 C =14641.469799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.113 0.887 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.587 6.587 8 N -0.719 5.719 9 C 0.136 3.864 10 C -0.104 4.104 11 C 0.014 3.986 12 N -0.482 5.482 13 C 0.016 3.984 14 C 0.496 3.504 15 O -0.583 6.583 16 N -0.607 5.607 17 C 0.100 3.900 18 C -0.161 4.161 19 C 0.264 3.736 20 C -0.541 4.541 21 H 0.052 0.948 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.968 3.032 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.277 1.277 28 C 0.001 3.999 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.414 0.586 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.036 0.964 49 H 0.096 0.904 50 H 0.020 0.980 51 H -0.007 1.007 52 H 0.267 0.733 53 H 0.075 0.925 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 -20.392 -16.346 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.130 4.130 4 H 0.131 0.869 5 C -0.200 4.200 6 C 0.299 3.701 7 O -0.468 6.468 8 N -0.371 5.371 9 C 0.012 3.988 10 C -0.123 4.123 11 C -0.115 4.115 12 N -0.205 5.205 13 C -0.115 4.115 14 C 0.285 3.715 15 O -0.463 6.463 16 N -0.340 5.340 17 C -0.022 4.022 18 C -0.219 4.219 19 C 0.142 3.858 20 C -0.580 4.580 21 H 0.070 0.930 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.203 1.203 27 H -0.203 1.203 28 C -0.128 4.128 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.114 0.886 50 H 0.038 0.962 51 H 0.011 0.989 52 H 0.076 0.924 53 H 0.093 0.907 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.077 -19.767 -16.545 27.329 hybrid contribution -0.352 0.268 1.490 1.554 sum -9.430 -19.499 -15.055 26.377 Atomic orbital electron populations 1.21823 0.93754 1.02357 1.02766 1.21312 0.96785 0.94282 1.01933 1.21411 0.89643 0.99575 1.02338 0.86912 1.21838 1.03436 1.00452 0.94231 1.21259 0.91237 0.83053 0.74551 1.90678 1.71481 1.33050 1.51564 1.46006 1.07799 1.09163 1.74150 1.21252 0.80072 0.95420 1.02040 1.22818 0.97092 0.95257 0.97158 1.23917 0.95557 0.93335 0.98704 1.68783 1.02718 1.38188 1.10774 1.22639 1.00033 0.94083 0.94790 1.21209 0.80019 0.89743 0.80557 1.90628 1.40182 1.45546 1.69925 1.48312 1.36264 1.18867 1.30518 1.21727 0.89742 0.90008 1.00747 1.22153 0.96957 1.02401 1.00360 1.18653 0.95762 0.82178 0.89195 1.21656 1.24987 1.00184 1.11152 0.93010 1.25892 0.97900 0.94595 1.00983 1.70054 1.43162 1.04877 1.38710 0.85467 0.78772 0.78042 0.78519 1.18447 1.20285 1.20301 1.24050 0.94091 0.97273 0.97419 0.92087 0.91204 0.92354 0.92552 0.93130 0.90908 0.92805 0.89621 0.74918 0.90663 0.92169 0.86410 0.88005 0.88963 0.85831 0.89084 0.91135 0.88324 0.92090 0.94427 0.88562 0.96199 0.98890 0.92419 0.90691 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.10 -1.49 4.75 30.59 0.15 -1.35 16 3 C -0.11 -1.34 2.72 -11.54 -0.03 -1.37 16 4 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.14 -1.15 8.84 71.99 0.64 -0.52 16 6 C 0.51 9.49 7.15 87.66 0.63 10.11 16 7 O -0.59 -16.06 15.92 -3.03 -0.05 -16.10 16 8 N -0.72 -10.37 5.45 -463.06 -2.52 -12.89 16 9 C 0.14 2.08 5.58 86.38 0.48 2.57 16 10 C -0.10 -1.63 4.09 -10.45 -0.04 -1.67 16 11 C 0.01 0.22 7.26 83.57 0.61 0.83 16 12 N -0.48 -12.95 5.82 -932.57 -5.43 -18.38 16 13 C 0.02 0.44 3.86 85.56 0.33 0.77 16 14 C 0.50 21.07 7.74 87.66 0.68 21.75 16 15 O -0.58 -31.48 16.01 -3.04 -0.05 -31.53 16 16 N -0.61 -26.09 2.46 -826.15 -2.03 -28.12 16 17 C 0.10 3.03 5.94 86.38 0.51 3.54 16 18 C -0.16 -3.93 10.24 71.98 0.74 -3.19 16 19 C 0.26 14.60 5.16 85.63 0.44 15.04 16 20 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 22 C 0.01 0.30 5.46 84.65 0.46 0.77 16 23 N -0.93 -57.10 13.29 21.44 0.28 -56.81 16 24 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.00 0.02 7.28 83.57 0.61 0.62 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.49 6.57 -2.38 -0.02 0.48 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.91 7.96 -2.38 -0.02 0.89 16 34 H 0.07 0.43 7.56 -2.39 -0.02 0.41 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.47 6.56 -2.39 -0.02 0.45 16 37 H 0.41 4.08 7.89 -92.71 -0.73 3.35 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.07 7.81 -2.39 -0.02 1.05 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.09 1.17 7.87 -2.39 -0.02 1.15 16 43 H 0.12 2.71 7.14 -2.39 -0.02 2.69 16 44 H 0.09 2.09 6.55 -2.39 -0.02 2.08 16 45 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 46 H 0.10 2.25 6.43 -2.38 -0.02 2.23 16 47 H 0.06 1.37 7.23 -2.39 -0.02 1.35 16 48 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 51 H -0.01 -0.45 7.43 -2.39 -0.02 -0.47 16 52 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 53 H 0.08 1.65 7.15 -2.39 -0.02 1.64 16 54 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -84.49 430.89 -0.50 -84.99 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.14 Total: 15.75 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 7.13 Total: 15.67 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -9.70 Total: -116.21 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.10 Total: -47.63 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -84.49 -0.50 -84.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001377959878.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.179 kcal (2) G-P(sol) polarization free energy of solvation -84.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds