Wall clock time and date at job start Tue Mar 31 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 H 1.09009 * 109.46922 * 308.74368 * 3 2 1 5 5 C 1.52995 * 109.47343 * 188.74371 * 3 2 1 6 6 C 1.53003 * 109.47177 * 68.73923 * 3 2 1 7 7 H 1.08999 * 109.46979 * 172.91440 * 6 3 2 8 8 N 1.46501 * 109.46941 * 52.91792 * 6 3 2 9 9 C 1.34774 * 120.00047 * 95.93773 * 8 6 3 10 10 C 1.50699 * 119.99851 * 185.33762 * 9 8 6 11 11 O 1.21274 * 120.00018 * 5.34552 * 9 8 6 12 12 C 1.50704 * 109.47254 * 292.91759 * 6 3 2 13 13 O 1.21276 * 119.99827 * 112.91867 * 12 6 3 14 14 N 1.34775 * 119.99726 * 292.91884 * 12 6 3 15 15 C 1.47019 * 125.65098 * 354.82945 * 14 12 6 16 16 C 1.54329 * 107.27107 * 178.99803 * 15 14 12 17 17 C 1.55159 * 102.93668 * 337.79930 * 16 15 14 18 18 H 1.08992 * 111.00733 * 277.38820 * 17 16 15 19 19 C 1.53005 * 110.99728 * 153.58024 * 17 16 15 20 20 N 1.46499 * 109.47381 * 69.58257 * 19 17 16 21 21 C 1.46498 * 120.00127 * 89.99555 * 20 19 17 22 22 C 1.36937 * 119.99800 * 269.99890 * 20 19 17 23 23 H 1.07999 * 120.00154 * 333.68482 * 22 20 19 24 24 C 1.38816 * 119.99506 * 153.68257 * 22 20 19 25 25 N 1.31615 * 120.00226 * 357.52750 * 24 22 20 26 26 Si 1.86805 * 119.99587 * 177.52177 * 24 22 20 27 27 H 1.48500 * 109.47130 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46693 * 120.00140 * 26 24 22 29 29 H 1.48498 * 109.47367 * 240.00378 * 26 24 22 30 30 C 1.47467 * 125.62295 * 174.84799 * 14 12 6 31 31 H 1.09000 * 109.47134 * 160.26734 * 1 2 3 32 32 H 1.09001 * 109.46669 * 280.27039 * 1 2 3 33 33 H 1.08998 * 109.46918 * 40.26323 * 1 2 3 34 34 H 1.09004 * 109.47068 * 240.00242 * 2 1 3 35 35 H 1.09001 * 109.46977 * 120.00133 * 2 1 3 36 36 H 1.08999 * 109.47088 * 306.39292 * 5 3 2 37 37 H 1.09000 * 109.47581 * 66.39267 * 5 3 2 38 38 H 1.08999 * 109.47163 * 186.40098 * 5 3 2 39 39 H 0.97002 * 119.99680 * 275.94257 * 8 6 3 40 40 H 1.08997 * 109.47079 * 60.00477 * 10 9 8 41 41 H 1.09003 * 109.47183 * 179.97438 * 10 9 8 42 42 H 1.08995 * 109.47496 * 300.00502 * 10 9 8 43 43 H 1.08993 * 109.88542 * 59.57069 * 15 14 12 44 44 H 1.09006 * 110.00700 * 298.47815 * 15 14 12 45 45 H 1.08998 * 110.71747 * 219.44241 * 16 15 14 46 46 H 1.08999 * 110.72384 * 96.16474 * 16 15 14 47 47 H 1.08999 * 109.47274 * 309.57870 * 19 17 16 48 48 H 1.09003 * 109.47010 * 189.58094 * 19 17 16 49 49 H 1.09002 * 109.47124 * 265.32858 * 21 20 19 50 50 H 1.09003 * 109.47266 * 145.32267 * 21 20 19 51 51 H 1.09005 * 109.47020 * 25.32352 * 21 20 19 52 52 H 0.97004 * 119.99827 * 179.97438 * 25 24 22 53 53 H 1.09004 * 110.35069 * 85.23663 * 30 14 12 54 54 H 1.09000 * 110.41141 * 322.89725 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5548 1.9994 -0.8016 5 6 3.5542 1.4480 -0.2193 6 6 1.7170 2.0977 1.3443 7 1 2.1884 3.0793 1.3927 8 7 2.2253 1.2577 2.4317 9 6 3.4290 1.5191 2.9788 10 6 4.0053 0.5862 4.0125 11 8 4.0482 2.5050 2.6393 12 6 0.2241 2.2499 1.4831 13 8 -0.3756 1.6092 2.3202 14 7 -0.4446 3.0981 0.6769 15 6 0.1652 4.0102 -0.3018 16 6 -0.9842 4.7616 -1.0060 17 6 -2.1998 3.8231 -0.7844 18 1 -2.2157 3.0231 -1.5244 19 6 -3.5114 4.6108 -0.8045 20 7 -3.7751 5.0857 -2.1651 21 6 -4.5446 4.2549 -3.0946 22 6 -3.3023 6.3060 -2.5680 23 1 -3.1251 7.0837 -1.8399 24 6 -3.0508 6.5434 -3.9124 25 7 -3.2204 5.5807 -4.7937 26 14 -2.4720 8.2295 -4.4707 27 1 -2.3604 9.1291 -3.2945 28 1 -1.1451 8.1053 -5.1260 29 1 -3.4496 8.7942 -5.4353 30 6 -1.9091 3.2648 0.6310 31 1 -0.3633 -0.9673 -0.3470 32 1 -0.3633 0.1832 1.0112 33 1 -0.3633 0.7842 -0.6642 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.0301 0.7985 0.5154 37 1 3.7774 1.0861 -1.2229 38 1 3.9340 2.4635 -0.1064 39 1 1.6956 0.5134 2.7578 40 1 4.1229 -0.4073 3.5800 41 1 4.9774 0.9584 4.3362 42 1 3.3330 0.5325 4.8687 43 1 0.7383 3.4401 -1.0329 44 1 0.8164 4.7214 0.2065 45 1 -0.7750 4.8770 -2.0694 46 1 -1.1551 5.7310 -0.5380 47 1 -3.4332 5.4640 -0.1307 48 1 -4.3278 3.9654 -0.4803 49 1 -3.8613 3.6658 -3.7063 50 1 -5.1493 4.8941 -3.7380 51 1 -5.1957 3.5867 -2.5310 52 1 -3.0450 5.7467 -5.7332 53 1 -2.2339 3.9738 1.3926 54 1 -2.4055 2.3044 0.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481507856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:51 Heat of formation + Delta-G solvation = -69.753931 kcal Electronic energy + Delta-G solvation = -32028.650248 eV Core-core repulsion = 28000.381894 eV Total energy + Delta-G solvation = -4028.268354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05143 -40.41337 -39.01121 -37.49378 -37.08476 -34.55692 -33.86161 -32.30764 -31.60298 -30.56805 -30.34411 -28.48638 -27.84456 -26.56249 -24.59829 -23.96488 -23.12187 -22.10354 -21.07135 -20.94436 -20.50912 -18.77210 -18.52435 -17.78533 -17.45513 -17.02064 -16.87479 -16.50056 -16.09505 -15.74632 -15.47969 -15.18954 -14.90458 -14.67345 -14.64392 -14.49562 -14.45475 -14.06424 -13.93637 -13.55191 -13.50874 -13.39017 -13.29724 -12.99355 -12.96244 -12.85819 -12.83724 -12.64594 -12.53737 -12.36665 -12.11241 -12.03881 -11.95398 -11.75998 -11.68471 -11.51373 -11.38121 -11.30182 -11.00369 -10.97207 -10.57143 -10.12523 -9.66371 -8.68227 -7.76110 -5.25924 1.42526 1.47615 1.51085 1.58292 1.58884 1.75705 2.37030 2.54500 3.25452 3.38302 3.60020 3.66776 3.73622 3.76750 3.88880 3.98922 4.02770 4.20901 4.26364 4.35789 4.37765 4.44002 4.52630 4.55945 4.63200 4.66699 4.67724 4.70509 4.74560 4.85357 4.87680 4.92908 4.96275 5.02816 5.04704 5.10272 5.11444 5.14610 5.22038 5.22965 5.30156 5.39111 5.42104 5.42724 5.45282 5.53856 5.72092 5.81275 6.40839 6.43926 6.51200 6.97366 7.21684 7.23575 7.93839 8.39547 9.27242 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002859 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.912720 B = 9792.127878 C =10234.338602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.110 4.110 3 C -0.099 4.099 4 H 0.084 0.916 5 C -0.132 4.132 6 C 0.136 3.864 7 H 0.104 0.896 8 N -0.703 5.703 9 C 0.509 3.491 10 C -0.166 4.166 11 O -0.588 6.588 12 C 0.534 3.466 13 O -0.565 6.565 14 N -0.607 5.607 15 C 0.097 3.903 16 C -0.100 4.100 17 C -0.103 4.103 18 H 0.058 0.942 19 C 0.161 3.839 20 N -0.615 5.615 21 C 0.179 3.821 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.047 4.047 25 N -0.938 5.938 26 Si 0.956 3.044 27 H -0.266 1.266 28 H -0.293 1.293 29 H -0.298 1.298 30 C 0.120 3.880 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.416 0.584 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.003 0.997 50 H 0.017 0.983 51 H 0.023 0.977 52 H 0.244 0.756 53 H 0.073 0.927 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -12.992 14.411 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.147 4.147 3 C -0.119 4.119 4 H 0.102 0.898 5 C -0.190 4.190 6 C 0.027 3.973 7 H 0.122 0.878 8 N -0.357 5.357 9 C 0.299 3.701 10 C -0.225 4.225 11 O -0.468 6.468 12 C 0.324 3.676 13 O -0.446 6.446 14 N -0.340 5.340 15 C -0.025 4.025 16 C -0.138 4.138 17 C -0.125 4.125 18 H 0.077 0.923 19 C 0.034 3.966 20 N -0.338 5.338 21 C 0.034 3.966 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.242 4.242 25 N -0.585 5.585 26 Si 0.785 3.215 27 H -0.191 1.191 28 H -0.220 1.220 29 H -0.226 1.226 30 C -0.002 4.002 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.021 0.979 50 H 0.035 0.965 51 H 0.041 0.959 52 H 0.054 0.946 53 H 0.091 0.909 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.498 -12.671 14.501 22.957 hybrid contribution -0.218 0.799 -0.945 1.256 sum 12.280 -11.872 13.556 21.806 Atomic orbital electron populations 1.22255 0.96643 1.01591 1.02947 1.21522 0.95015 0.95091 1.03120 1.21675 0.98076 0.97589 0.94522 0.89768 1.21699 0.93367 1.01892 1.01994 1.20737 0.89714 0.97485 0.89376 0.87773 1.45745 1.19935 1.33631 1.36375 1.21581 0.80232 0.86232 0.82060 1.21938 1.03125 0.99828 0.97632 1.90708 1.61230 1.30597 1.64252 1.20365 0.89732 0.77910 0.79622 1.90621 1.70327 1.47464 1.36144 1.48513 1.08148 1.39049 1.38247 1.22351 0.96647 0.92329 0.91206 1.22319 0.93273 0.98053 1.00146 1.22854 0.97585 0.97731 0.94369 0.92338 1.20886 0.93624 0.96064 0.85986 1.44102 1.61067 1.18248 1.10391 1.20549 0.92483 0.92479 0.91088 1.19398 1.36103 0.89876 0.91838 0.91284 1.25746 1.01031 1.00163 0.97229 1.70215 1.54808 1.32373 1.01111 0.85363 0.77173 0.80871 0.78062 1.19072 1.22030 1.22567 1.22238 0.79742 1.00982 0.97280 0.92329 0.91433 0.94104 0.90780 0.90666 0.92794 0.91254 0.93192 0.74610 0.86879 0.88832 0.87554 0.90324 0.90148 0.92020 0.91150 0.92911 0.92609 0.97862 0.96465 0.95856 0.94607 0.90899 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 8.50 71.98 0.61 -3.29 16 2 C -0.11 -1.97 5.28 30.59 0.16 -1.81 16 3 C -0.10 -1.94 2.27 -10.80 -0.02 -1.97 16 4 H 0.08 1.79 5.13 -2.38 -0.01 1.77 16 5 C -0.13 -2.45 8.24 71.98 0.59 -1.86 16 6 C 0.14 3.01 1.73 44.25 0.08 3.09 16 7 H 0.10 2.61 7.07 -2.39 -0.02 2.59 16 8 N -0.70 -13.11 3.71 -446.10 -1.65 -14.77 16 9 C 0.51 9.78 6.68 87.66 0.59 10.37 16 10 C -0.17 -1.61 10.32 71.24 0.74 -0.88 16 11 O -0.59 -16.27 16.04 -3.01 -0.05 -16.32 16 12 C 0.53 13.90 4.62 87.66 0.40 14.30 16 13 O -0.56 -16.80 14.19 -3.02 -0.04 -16.85 16 14 N -0.61 -16.04 3.10 -811.68 -2.52 -18.56 16 15 C 0.10 2.48 6.19 86.73 0.54 3.02 16 16 C -0.10 -3.21 5.56 31.79 0.18 -3.04 16 17 C -0.10 -3.37 3.27 -9.40 -0.03 -3.40 16 18 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 19 C 0.16 5.86 5.24 86.38 0.45 6.32 16 20 N -0.62 -28.71 2.89 -726.91 -2.10 -30.81 16 21 C 0.18 8.55 8.99 127.77 1.15 9.70 16 22 C -0.24 -12.30 8.84 84.03 0.74 -11.56 16 23 H 0.07 3.43 7.83 -2.91 -0.02 3.41 16 24 C -0.05 -2.50 5.29 84.86 0.45 -2.05 16 25 N -0.94 -53.28 10.40 21.65 0.23 -53.05 16 26 Si 0.96 43.46 29.55 68.60 2.03 45.49 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 29 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 30 C 0.12 3.35 6.36 86.85 0.55 3.90 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.69 4.78 -2.39 -0.01 1.68 16 33 H 0.04 1.03 7.48 -2.39 -0.02 1.01 16 34 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.07 1.17 6.81 -2.39 -0.02 1.15 16 36 H 0.05 0.98 7.13 -2.39 -0.02 0.96 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.06 8.12 -2.39 -0.02 1.04 16 39 H 0.42 6.71 7.52 -92.71 -0.70 6.01 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 1.89 5.69 -2.39 -0.01 1.88 16 44 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.07 2.30 7.96 -2.39 -0.02 2.29 16 47 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 48 H 0.06 1.85 7.86 -2.39 -0.02 1.83 16 49 H 0.00 0.16 7.36 -2.39 -0.02 0.14 16 50 H 0.02 0.88 7.24 -2.39 -0.02 0.87 16 51 H 0.02 0.95 7.84 -2.38 -0.02 0.93 16 52 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 53 H 0.07 1.96 8.04 -2.38 -0.02 1.94 16 54 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16 Total: -1.00 -65.64 410.05 3.24 -62.40 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.18 Total: 21.62 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.17 Total: 20.85 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -6.05 Total: -117.18 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.09 Total: -33.17 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.64 3.24 -62.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481507856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.353 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds