Wall clock time and date at job start Tue Mar 31 2020 23:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 H 1.09006 * 109.46644 * 305.61784 * 3 2 1 5 5 C 1.52995 * 109.46772 * 65.61569 * 3 2 1 6 6 N 1.46503 * 109.46923 * 175.00217 * 5 3 2 7 7 C 1.34778 * 120.00121 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99771 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99779 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.02005 * 333.59761 * 9 7 6 11 11 C 1.54269 * 110.02870 * 212.21071 * 9 7 6 12 12 C 1.54888 * 104.19587 * 217.05512 * 11 9 7 13 13 C 1.54896 * 102.91152 * 37.85282 * 12 11 9 14 14 C 1.53873 * 110.07426 * 95.02247 * 9 7 6 15 15 C 1.52999 * 110.03232 * 238.58893 * 14 9 7 16 16 C 1.53001 * 110.02861 * 359.97120 * 14 9 7 17 17 N 1.46900 * 109.47037 * 185.61830 * 3 2 1 18 18 C 1.46891 * 111.00199 * 85.49071 * 17 3 2 19 19 C 1.50700 * 109.47136 * 181.06359 * 18 17 3 20 20 O 1.21290 * 119.99804 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99602 * 179.97438 * 19 18 17 22 22 C 1.37093 * 119.99308 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00509 * 359.97438 * 22 21 19 24 24 C 1.38958 * 120.00074 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99772 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00439 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46946 * 90.00057 * 26 24 22 28 28 H 1.48501 * 109.47057 * 210.00339 * 26 24 22 29 29 H 1.48502 * 109.47085 * 330.00131 * 26 24 22 30 30 H 1.09009 * 109.46861 * 174.89509 * 1 2 3 31 31 H 1.08993 * 109.47443 * 294.89514 * 1 2 3 32 32 H 1.09000 * 109.47652 * 54.89916 * 1 2 3 33 33 H 1.09004 * 109.47149 * 239.99890 * 2 1 3 34 34 H 1.09000 * 109.47188 * 120.00147 * 2 1 3 35 35 H 1.09000 * 109.47642 * 55.00334 * 5 3 2 36 36 H 1.09001 * 109.47430 * 294.99760 * 5 3 2 37 37 H 0.96998 * 119.99902 * 359.97438 * 6 5 3 38 38 H 1.09001 * 110.48443 * 98.38031 * 11 9 7 39 39 H 1.08996 * 110.49013 * 335.73418 * 11 9 7 40 40 H 1.08999 * 110.75680 * 156.25703 * 12 11 9 41 41 H 1.08997 * 110.75842 * 279.44504 * 12 11 9 42 42 H 1.08996 * 110.48622 * 80.83192 * 13 12 11 43 43 H 1.09005 * 110.48143 * 203.46840 * 13 12 11 44 44 H 1.08999 * 109.46656 * 59.99650 * 15 14 9 45 45 H 1.08999 * 109.47005 * 179.97438 * 15 14 9 46 46 H 1.09000 * 109.47176 * 299.99762 * 15 14 9 47 47 H 1.09002 * 109.47474 * 60.35650 * 16 14 9 48 48 H 1.09006 * 109.46672 * 180.35713 * 16 14 9 49 49 H 1.09000 * 109.46995 * 300.34834 * 16 14 9 50 50 H 1.00906 * 110.99661 * 321.53579 * 17 3 2 51 51 H 1.09000 * 109.47772 * 301.06996 * 18 17 3 52 52 H 1.09009 * 109.47122 * 61.06468 * 18 17 3 53 53 H 0.96997 * 120.00184 * 0.02562 * 21 19 18 54 54 H 0.96995 * 120.00663 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5967 1.9845 -0.8355 5 6 1.6484 2.1218 1.3138 6 7 2.2377 3.4621 1.3651 7 6 2.0256 4.2510 2.4371 8 8 1.3472 3.8510 3.3595 9 6 2.6323 5.6294 2.4901 10 1 3.5341 5.6639 1.8789 11 6 2.9678 6.0034 3.9487 12 6 2.6441 7.5155 4.0372 13 6 1.3725 7.6490 3.1629 14 6 1.6172 6.6727 1.9912 15 6 2.1916 7.4319 0.7935 16 6 0.3091 5.9842 1.5966 17 7 3.5027 1.4448 -0.1356 18 6 3.9006 1.3825 -1.5482 19 6 5.4042 1.3603 -1.6461 20 8 6.0781 1.3927 -0.6381 21 7 6.0001 1.3034 -2.8537 22 6 7.3680 1.2826 -2.9426 23 1 7.9681 1.3123 -2.0452 24 6 7.9825 1.2245 -4.1876 25 7 7.2524 1.1899 -5.2797 26 14 9.8463 1.1955 -4.3089 27 1 10.3221 -0.2109 -4.2846 28 1 10.2698 1.8396 -5.5781 29 1 10.4287 1.9350 -3.1602 30 1 -0.3633 -1.0237 -0.0915 31 1 -0.3634 0.4326 0.9321 32 1 -0.3634 0.5909 -0.8407 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0167 1.5307 2.1523 36 1 0.5628 2.1997 1.3732 37 1 2.7806 3.7818 0.6276 38 1 4.0234 5.8265 4.1546 39 1 2.3432 5.4385 4.6407 40 1 2.4371 7.8066 5.0670 41 1 3.4599 8.1099 3.6259 42 1 0.4886 7.3517 3.7272 43 1 1.2668 8.6703 2.7969 44 1 2.4087 6.7297 -0.0115 45 1 1.4655 8.1675 0.4475 46 1 3.1095 7.9388 1.0908 47 1 -0.1081 5.4722 2.4638 48 1 -0.4006 6.7303 1.2389 49 1 0.5040 5.2598 0.8058 50 1 3.9157 0.6890 0.3901 51 1 3.4936 0.4783 -2.0009 52 1 3.5151 2.2566 -2.0732 53 1 5.4612 1.2771 -3.6597 54 1 7.6812 1.1497 -6.1488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481840724.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:08 Heat of formation + Delta-G solvation = -126.763096 kcal Electronic energy + Delta-G solvation = -30652.602488 eV Core-core repulsion = 26621.862031 eV Total energy + Delta-G solvation = -4030.740457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57021 -40.24693 -39.07863 -38.12959 -35.97662 -35.01077 -33.61190 -33.16797 -33.10744 -30.72854 -29.22494 -28.22267 -27.58216 -25.98086 -25.35368 -24.35104 -22.22108 -21.81404 -21.22119 -21.06669 -19.92100 -19.59165 -17.99182 -17.78901 -17.21950 -16.77858 -16.60057 -16.33354 -16.21466 -15.89458 -15.70305 -15.38597 -15.07794 -14.90506 -14.50323 -14.41556 -14.35166 -14.09071 -13.88071 -13.62298 -13.54195 -13.46874 -13.25315 -12.92609 -12.89623 -12.71532 -12.62522 -12.49597 -12.40234 -12.34200 -12.12403 -12.08069 -11.93430 -11.70947 -11.60000 -11.52381 -11.49372 -11.41820 -11.34388 -10.66880 -10.32872 -9.99964 -9.91180 -9.32851 -8.45971 -5.94089 1.38081 1.42404 1.54522 1.73007 2.07622 2.28949 2.35064 2.89729 3.21900 3.49880 3.52953 3.60294 3.74130 3.80836 3.96002 4.18214 4.21154 4.32651 4.33713 4.37790 4.40263 4.41896 4.47908 4.50848 4.55401 4.56528 4.63106 4.74034 4.76760 4.79581 4.83817 4.90445 4.93816 5.02514 5.02721 5.09367 5.13741 5.18773 5.20214 5.21329 5.34457 5.35847 5.37340 5.42166 5.43559 5.54609 5.60611 5.89289 6.09940 6.34205 6.61506 6.69016 7.14322 7.36135 7.58508 8.13918 8.71331 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010348 B = 0.002652 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.268207 B =10554.518171 C =12272.777784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.099 0.901 5 C 0.137 3.863 6 N -0.709 5.709 7 C 0.524 3.476 8 O -0.587 6.587 9 C -0.109 4.109 10 H 0.096 0.904 11 C -0.116 4.116 12 C -0.117 4.117 13 C -0.111 4.111 14 C -0.050 4.050 15 C -0.138 4.138 16 C -0.147 4.147 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.070 0.930 49 H 0.053 0.947 50 H 0.344 0.656 51 H 0.067 0.933 52 H 0.109 0.891 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.443 9.466 9.324 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C -0.027 4.027 4 H 0.117 0.883 5 C 0.013 3.987 6 N -0.359 5.359 7 C 0.312 3.688 8 O -0.468 6.468 9 C -0.130 4.130 10 H 0.114 0.886 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.149 4.149 14 C -0.050 4.050 15 C -0.196 4.196 16 C -0.205 4.205 17 N -0.303 5.303 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.163 0.837 51 H 0.084 0.916 52 H 0.127 0.873 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.355 9.863 10.440 21.766 hybrid contribution 0.909 -1.326 -1.079 1.936 sum -15.446 8.537 9.362 19.977 Atomic orbital electron populations 1.21741 0.93955 1.02425 1.02349 1.22167 0.97964 0.96157 1.02517 1.21915 0.87014 0.96102 0.97705 0.88335 1.21314 0.97633 0.82777 0.96989 1.45939 1.52854 1.15735 1.21340 1.20760 0.79602 0.87228 0.81236 1.90622 1.41845 1.75996 1.38317 1.22172 0.99814 0.91137 0.99886 0.88602 1.22346 1.01324 0.97708 0.93983 1.22460 0.98016 0.94445 1.00521 1.22514 0.97905 0.99197 0.95273 1.21084 0.93723 0.93701 0.96527 1.21936 1.01365 1.00075 0.96174 1.22048 0.96992 1.00512 1.00912 1.60168 1.07991 1.53214 1.08936 1.21577 0.90677 1.03154 0.91211 1.20899 0.91264 0.82064 0.83151 1.90509 1.67142 1.56558 1.36731 1.41925 1.06839 1.65010 1.07288 1.19632 0.83075 1.49666 0.93754 0.90444 1.25984 1.04624 0.96392 0.94146 1.69659 1.37711 1.50373 0.98360 0.84979 0.77239 0.78602 0.77860 1.19794 1.19585 1.19802 0.92068 0.92399 0.91792 0.91501 0.91829 0.93456 0.90592 0.75345 0.91347 0.91933 0.90661 0.90287 0.92143 0.89674 0.92686 0.91181 0.91756 0.93700 0.91090 0.92819 0.83655 0.91558 0.87339 0.76973 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.56 71.98 0.69 -1.50 16 2 C -0.15 -2.69 5.39 30.60 0.16 -2.53 16 3 C 0.08 1.68 2.21 44.92 0.10 1.78 16 4 H 0.10 1.77 7.81 -2.38 -0.02 1.75 16 5 C 0.14 3.11 5.02 86.38 0.43 3.54 16 6 N -0.71 -16.94 5.02 -463.06 -2.32 -19.27 16 7 C 0.52 13.84 4.71 87.66 0.41 14.25 16 8 O -0.59 -19.29 14.84 -3.03 -0.04 -19.34 16 9 C -0.11 -2.34 2.94 -10.81 -0.03 -2.37 16 10 H 0.10 1.99 7.67 -2.39 -0.02 1.97 16 11 C -0.12 -2.45 6.32 31.67 0.20 -2.25 16 12 C -0.12 -1.85 6.90 31.89 0.22 -1.63 16 13 C -0.11 -1.74 5.92 31.74 0.19 -1.56 16 14 C -0.05 -0.87 0.94 -51.39 -0.05 -0.92 16 15 C -0.14 -2.03 8.14 71.98 0.59 -1.45 16 16 C -0.15 -2.79 7.22 71.98 0.52 -2.27 16 17 N -0.67 -18.61 5.34 -495.58 -2.64 -21.26 16 18 C 0.07 2.01 5.96 85.56 0.51 2.52 16 19 C 0.44 19.68 7.82 87.66 0.69 20.36 16 20 O -0.62 -33.15 15.75 -3.06 -0.05 -33.20 16 21 N -0.57 -28.23 5.29 -306.97 -1.62 -29.85 16 22 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -48.61 13.05 21.67 0.28 -48.32 16 26 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.87 6.95 -2.39 -0.02 0.85 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.26 7.36 -2.38 -0.02 1.24 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.62 6.95 -2.39 -0.02 1.60 16 37 H 0.41 9.50 8.14 -92.71 -0.75 8.74 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.60 6.91 -2.39 -0.02 1.59 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.04 7.84 -2.39 -0.02 1.03 16 43 H 0.08 1.04 7.84 -2.38 -0.02 1.02 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.04 1.05 6.86 -2.39 -0.02 1.04 16 48 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.05 1.04 7.20 -2.39 -0.02 1.02 16 50 H 0.34 10.74 8.13 -89.69 -0.73 10.01 16 51 H 0.07 1.78 7.37 -2.39 -0.02 1.76 16 52 H 0.11 2.86 8.08 -2.38 -0.02 2.84 16 53 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 54 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -67.85 422.41 0.22 -67.63 By element: Atomic # 1 Polarization: 52.39 SS G_CDS: -1.31 Total: 51.07 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.91 Total: 8.24 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -6.31 Total: -118.70 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.09 Total: -52.53 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.85 0.22 -67.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481840724.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.129 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds