Wall clock time and date at job start Wed Apr 1 2020 00:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 109.47547 * 2 1 4 4 N 1.46905 * 109.47360 * 120.00130 * 2 1 3 5 5 C 1.47840 * 110.99532 * 326.72227 * 4 2 1 6 6 C 1.54910 * 104.79635 * 146.35964 * 5 4 2 7 7 C 1.55143 * 101.65129 * 322.92999 * 6 5 4 8 8 C 1.47441 * 110.99685 * 87.55927 * 4 2 1 9 9 H 1.09006 * 109.88759 * 117.34079 * 8 4 2 10 10 C 1.50698 * 109.89366 * 356.15684 * 8 4 2 11 11 O 1.21288 * 119.99669 * 298.49102 * 10 8 4 12 12 N 1.34773 * 120.00484 * 118.49041 * 10 8 4 13 13 C 1.46496 * 120.00199 * 184.77097 * 12 10 8 14 14 C 1.53004 * 109.53934 * 299.91389 * 13 12 10 15 15 N 1.46495 * 109.47255 * 301.67363 * 14 13 12 16 16 C 1.36935 * 120.00373 * 185.15194 * 15 14 13 17 17 H 1.08004 * 119.99898 * 5.10602 * 16 15 14 18 18 C 1.38810 * 120.00405 * 185.10902 * 16 15 14 19 19 N 1.31624 * 119.99634 * 5.14992 * 18 16 15 20 20 Si 1.86793 * 120.00159 * 185.15274 * 18 16 15 21 21 H 1.48504 * 109.47280 * 89.99920 * 20 18 16 22 22 H 1.48498 * 109.47275 * 209.99832 * 20 18 16 23 23 H 1.48503 * 109.47148 * 329.99701 * 20 18 16 24 24 C 1.53179 * 109.54423 * 179.73742 * 13 12 10 25 25 C 1.53276 * 109.06511 * 297.02467 * 24 13 12 26 26 O 1.42901 * 109.45982 * 302.44945 * 25 24 13 27 27 C 1.42901 * 114.10409 * 61.15590 * 26 25 24 28 28 C 1.53091 * 109.41249 * 298.84416 * 27 26 25 29 29 H 1.08999 * 109.47278 * 319.32602 * 1 2 3 30 30 H 1.09003 * 109.47101 * 79.32677 * 1 2 3 31 31 H 1.08999 * 109.47307 * 199.32299 * 1 2 3 32 32 H 1.09002 * 109.47569 * 240.00260 * 2 1 3 33 33 H 1.09001 * 109.46654 * 55.06512 * 3 2 1 34 34 H 1.08998 * 109.47389 * 175.06017 * 3 2 1 35 35 H 1.08992 * 109.47246 * 295.06971 * 3 2 1 36 36 H 1.09001 * 110.37529 * 265.18730 * 5 4 2 37 37 H 1.09003 * 110.37906 * 27.53152 * 5 4 2 38 38 H 1.09007 * 110.98896 * 81.02113 * 6 5 4 39 39 H 1.08993 * 110.99484 * 204.79784 * 6 5 4 40 40 H 1.08998 * 110.70366 * 277.26525 * 7 6 5 41 41 H 1.09002 * 110.70069 * 154.03440 * 7 6 5 42 42 H 0.97000 * 119.99809 * 4.76071 * 12 10 8 43 43 H 1.08999 * 109.47325 * 61.67826 * 14 13 12 44 44 H 1.09001 * 109.46834 * 181.67241 * 14 13 12 45 45 H 0.97006 * 120.00009 * 5.14746 * 15 14 13 46 46 H 0.96999 * 119.99666 * 185.01026 * 19 18 16 47 47 H 1.09002 * 109.51899 * 57.01856 * 24 13 12 48 48 H 1.09006 * 109.52258 * 177.20390 * 24 13 12 49 49 H 1.08997 * 109.45932 * 182.44865 * 25 24 13 50 50 H 1.09001 * 109.46925 * 62.44785 * 25 24 13 51 51 H 1.09001 * 109.48670 * 178.85991 * 27 26 25 52 52 H 1.09008 * 109.48722 * 58.82754 * 27 26 25 53 53 H 1.09005 * 109.51985 * 297.69829 * 28 27 26 54 54 H 1.08996 * 109.57374 * 177.54119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1083 -0.4787 2.3438 6 6 1.1754 -1.7969 3.1546 7 6 1.2802 -2.8549 2.0247 8 6 2.1405 -2.1424 0.9601 9 1 3.1818 -2.4490 1.0589 10 6 1.6327 -2.4786 -0.4184 11 8 0.4760 -2.2577 -0.7091 12 7 2.4636 -3.0247 -1.3281 13 6 2.0000 -3.2550 -2.6986 14 6 0.8007 -4.2049 -2.6802 15 7 1.1865 -5.4663 -2.0428 16 6 0.3043 -6.5129 -2.0063 17 1 -0.6437 -6.4383 -2.5182 18 6 0.6284 -7.6699 -1.3112 19 7 1.7371 -7.7239 -0.6038 20 14 -0.5088 -9.1502 -1.3797 21 1 -0.1192 -10.0215 -2.5174 22 1 -0.4026 -9.9152 -0.1113 23 1 -1.9088 -8.6908 -1.5648 24 6 3.1314 -3.8739 -3.5251 25 6 4.2963 -2.8808 -3.6020 26 8 3.8381 -1.6526 -4.1709 27 6 2.8121 -1.0062 -3.4149 28 6 1.5882 -1.9220 -3.3311 29 1 -0.3634 0.7794 0.6698 30 1 -0.3633 0.1903 -1.0099 31 1 -0.3634 -0.9698 0.3400 32 1 1.8933 -0.5138 -0.8900 33 1 1.6063 1.9812 0.8425 34 1 3.1264 1.4437 0.0885 35 1 1.7506 1.9302 -0.9308 36 1 1.4520 0.3584 2.9513 37 1 0.0921 -0.3012 1.9917 38 1 2.0590 -1.8183 3.7927 39 1 0.2687 -1.9407 3.7421 40 1 0.2937 -3.0928 1.6270 41 1 1.7792 -3.7547 2.3844 42 1 3.3687 -3.2652 -1.0755 43 1 -0.0153 -3.7492 -2.1195 44 1 0.4753 -4.3990 -3.7023 45 1 2.0670 -5.5601 -1.6467 46 1 2.0005 -8.5545 -0.1776 47 1 3.4668 -4.7961 -3.0504 48 1 2.7712 -4.0909 -4.5308 49 1 5.0878 -3.2971 -4.2251 50 1 4.6824 -2.6953 -2.5997 51 1 2.5343 -0.0721 -3.9032 52 1 3.1784 -0.7962 -2.4099 53 1 1.1969 -2.0996 -4.3328 54 1 0.8202 -1.4500 -2.7184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484862694.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:06 Heat of formation + Delta-G solvation = -64.530742 kcal Electronic energy + Delta-G solvation = -33763.218993 eV Core-core repulsion = 29735.177134 eV Total energy + Delta-G solvation = -4028.041860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.40236 -40.68540 -38.65396 -37.08567 -35.49862 -35.30066 -33.33727 -32.32738 -32.04244 -30.49411 -29.80641 -28.19265 -28.00049 -25.47754 -24.75345 -24.05658 -23.22267 -22.87669 -21.67100 -20.55574 -19.98688 -19.27604 -18.38046 -17.49330 -17.14419 -16.90438 -16.86502 -16.65342 -16.36175 -15.98535 -15.56209 -15.37918 -15.14985 -15.08264 -14.87185 -14.45108 -14.22297 -13.96487 -13.86849 -13.63337 -13.41965 -13.30880 -13.12150 -13.07785 -12.87208 -12.79198 -12.66437 -12.58244 -12.31860 -12.24629 -12.13625 -12.05045 -12.00620 -11.97548 -11.69547 -11.52882 -11.49562 -11.26273 -10.99860 -10.59836 -10.33604 -9.85989 -9.28852 -8.93886 -7.95413 -5.22926 1.43586 1.44202 1.52321 1.63564 2.19664 2.53689 2.94559 3.01430 3.35127 3.47500 3.58577 3.71375 3.75647 3.87944 3.88792 3.99258 4.03859 4.17895 4.23423 4.28849 4.30435 4.38428 4.41704 4.49953 4.55290 4.63881 4.72048 4.74351 4.77360 4.82801 4.84826 4.85864 4.93234 4.94233 4.98467 5.01196 5.04896 5.06213 5.10932 5.17084 5.17818 5.21025 5.29018 5.35155 5.45578 5.52072 5.74094 5.91792 6.05452 6.23260 6.26567 6.62338 7.33400 7.36658 8.07555 8.36421 9.25908 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.004950 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.962768 B = 5654.804180 C = 7524.929704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.060 3.940 3 C -0.130 4.130 4 N -0.495 5.495 5 C 0.025 3.975 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.056 3.944 9 H 0.109 0.891 10 C 0.511 3.489 11 O -0.548 6.548 12 N -0.706 5.706 13 C 0.183 3.817 14 C 0.145 3.855 15 N -0.725 5.725 16 C -0.242 4.242 17 H 0.061 0.939 18 C -0.065 4.065 19 N -0.959 5.959 20 Si 0.963 3.037 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.279 1.279 24 C -0.147 4.147 25 C 0.066 3.934 26 O -0.391 6.391 27 C 0.072 3.928 28 C -0.155 4.155 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.404 0.596 43 H 0.022 0.978 44 H 0.015 0.985 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.113 0.887 50 H 0.062 0.938 51 H 0.107 0.893 52 H 0.053 0.947 53 H 0.076 0.924 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 18.853 2.201 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.048 4.048 3 C -0.187 4.187 4 N -0.220 5.220 5 C -0.102 4.102 6 C -0.154 4.154 7 C -0.168 4.168 8 C -0.055 4.055 9 H 0.126 0.874 10 C 0.298 3.702 11 O -0.426 6.426 12 N -0.358 5.358 13 C 0.097 3.903 14 C 0.018 3.982 15 N -0.368 5.368 16 C -0.374 4.374 17 H 0.079 0.921 18 C -0.258 4.258 19 N -0.610 5.610 20 Si 0.793 3.207 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.204 1.204 24 C -0.185 4.185 25 C -0.010 4.010 26 O -0.310 6.310 27 C -0.004 4.004 28 C -0.194 4.194 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.240 0.760 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.131 0.869 50 H 0.080 0.920 51 H 0.125 0.875 52 H 0.071 0.929 53 H 0.094 0.906 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.380 19.263 1.936 20.094 hybrid contribution -1.185 -2.153 0.119 2.461 sum 4.194 17.110 2.055 17.736 Atomic orbital electron populations 1.22515 0.96657 1.02010 1.01013 1.22091 0.93843 0.96523 0.92379 1.21728 1.01572 0.93523 1.01901 1.64280 1.47324 1.04871 1.05542 1.23433 0.96442 0.98761 0.91593 1.22679 1.03426 0.92793 0.96526 1.22685 0.99073 0.99290 0.95759 1.22662 1.01466 0.90507 0.90862 0.87362 1.21027 0.85870 0.76191 0.87133 1.90647 1.18132 1.53615 1.80252 1.46057 1.16503 1.63026 1.10241 1.20381 0.93990 0.94336 0.81632 1.21106 0.95964 0.86174 0.94971 1.42220 1.15869 1.09742 1.69002 1.19512 0.98920 0.94671 1.24312 0.92130 1.25353 0.99709 1.01189 0.99499 1.69804 1.26391 1.26317 1.38486 0.85287 0.78619 0.80152 0.76627 1.21199 1.22037 1.20417 1.22371 0.96017 0.99502 1.00652 1.22693 0.95155 0.83459 0.99739 1.87899 1.55311 1.36688 1.51109 1.22554 0.86371 0.95179 0.96312 1.22448 0.99899 0.95552 1.01511 0.92619 0.93884 0.91491 0.91121 0.92263 0.91850 0.91843 0.88360 0.92070 0.89203 0.89924 0.93410 0.90681 0.76014 0.95999 0.96723 0.79025 0.94047 0.90815 0.90334 0.86912 0.92026 0.87479 0.92856 0.90570 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 6.30 71.98 0.45 -3.80 16 2 C 0.06 1.40 2.43 44.91 0.11 1.51 16 3 C -0.13 -2.36 9.39 71.98 0.68 -1.69 16 4 N -0.50 -11.48 5.03 -839.86 -4.22 -15.70 16 5 C 0.02 0.52 6.20 86.78 0.54 1.05 16 6 C -0.12 -2.44 7.08 31.98 0.23 -2.21 16 7 C -0.13 -3.67 6.43 31.77 0.20 -3.46 16 8 C 0.06 1.51 3.74 44.51 0.17 1.67 16 9 H 0.11 2.60 7.95 -2.38 -0.02 2.58 16 10 C 0.51 16.08 3.80 87.66 0.33 16.42 16 11 O -0.55 -20.23 7.87 -3.05 -0.02 -20.25 16 12 N -0.71 -20.84 3.76 -422.38 -1.59 -22.43 16 13 C 0.18 5.80 0.32 3.73 0.00 5.80 16 14 C 0.15 6.21 4.94 86.38 0.43 6.64 16 15 N -0.73 -36.63 5.14 -343.46 -1.76 -38.39 16 16 C -0.24 -13.85 9.98 84.03 0.84 -13.01 16 17 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 18 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 19 N -0.96 -57.32 13.08 21.65 0.28 -57.04 16 20 Si 0.96 46.85 29.56 68.60 2.03 48.88 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 C -0.15 -4.22 4.78 30.75 0.15 -4.08 16 25 C 0.07 1.48 6.67 72.07 0.48 1.96 16 26 O -0.39 -9.61 10.77 -148.98 -1.60 -11.21 16 27 C 0.07 1.65 6.46 72.01 0.46 2.12 16 28 C -0.16 -4.32 4.53 30.68 0.14 -4.18 16 29 H 0.06 1.24 7.02 -2.39 -0.02 1.22 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 2.16 4.96 -2.39 -0.01 2.14 16 32 H 0.07 1.83 3.60 -2.39 -0.01 1.82 16 33 H 0.06 1.00 8.04 -2.39 -0.02 0.98 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.39 4.63 -2.39 -0.01 1.38 16 38 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.68 7.47 -2.39 -0.02 1.66 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.40 10.47 7.39 -92.71 -0.69 9.78 16 43 H 0.02 1.07 6.08 -2.39 -0.01 1.05 16 44 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.38 19.41 6.58 -92.70 -0.61 18.80 16 46 H 0.25 14.55 8.32 -92.71 -0.77 13.78 16 47 H 0.07 2.39 7.19 -2.39 -0.02 2.37 16 48 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 49 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.06 1.22 7.10 -2.39 -0.02 1.21 16 51 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.05 1.19 6.39 -2.38 -0.02 1.18 16 53 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 54 H 0.08 2.45 6.00 -2.39 -0.01 2.43 16 Total: -1.00 -66.63 389.31 -1.60 -68.23 By element: Atomic # 1 Polarization: 46.82 SS G_CDS: -0.38 Total: 46.44 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 5.67 Total: 1.49 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -7.29 Total: -133.57 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.63 Total: -31.47 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -66.63 -1.60 -68.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484862694.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.701 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds