Wall clock time and date at job start Tue Mar 31 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47373 * 2 1 4 4 H 1.09000 * 109.47300 * 54.99732 * 3 2 1 5 5 C 1.53005 * 109.46969 * 295.00006 * 3 2 1 6 6 C 1.50701 * 109.47379 * 175.00123 * 3 2 1 7 7 O 1.21286 * 120.00000 * 23.27492 * 6 3 2 8 8 N 1.34776 * 120.00071 * 203.27894 * 6 3 2 9 9 C 1.46930 * 120.63138 * 5.11240 * 8 6 3 10 10 C 1.53183 * 108.77667 * 233.58719 * 9 8 6 11 11 C 1.53042 * 109.31461 * 305.36620 * 10 9 8 12 12 C 1.53039 * 109.53921 * 61.36911 * 11 10 9 13 13 H 1.08998 * 109.50211 * 58.61579 * 12 11 10 14 14 C 1.52993 * 109.49721 * 178.68528 * 12 11 10 15 15 N 1.46900 * 109.47095 * 184.21984 * 14 12 11 16 16 C 1.46905 * 110.99898 * 75.59705 * 15 14 12 17 17 C 1.46906 * 111.00305 * 199.54856 * 15 14 12 18 18 C 1.50697 * 109.46954 * 170.00255 * 17 15 14 19 19 O 1.21295 * 120.00553 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99846 * 180.02562 * 18 17 15 21 21 C 1.37106 * 120.00096 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99839 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99739 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99451 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00190 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47325 * 89.99654 * 25 23 21 27 27 H 1.48507 * 109.47304 * 209.99672 * 25 23 21 28 28 H 1.48498 * 109.47652 * 329.99699 * 25 23 21 29 29 C 1.46927 * 120.62932 * 184.83680 * 8 6 3 30 30 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47296 * 60.00242 * 1 2 3 32 32 H 1.08997 * 109.47031 * 300.00267 * 1 2 3 33 33 H 1.09010 * 109.47260 * 119.99786 * 2 1 3 34 34 H 1.09004 * 109.47404 * 239.99770 * 2 1 3 35 35 H 1.08998 * 109.47306 * 57.35962 * 5 3 2 36 36 H 1.08999 * 109.47210 * 177.36232 * 5 3 2 37 37 H 1.09002 * 109.47003 * 297.36058 * 5 3 2 38 38 H 1.08997 * 109.58373 * 353.37612 * 9 8 6 39 39 H 1.09000 * 109.58301 * 113.79690 * 9 8 6 40 40 H 1.08998 * 109.49854 * 65.31976 * 10 9 8 41 41 H 1.09003 * 109.50155 * 185.38126 * 10 9 8 42 42 H 1.09006 * 109.45875 * 181.38723 * 11 10 9 43 43 H 1.08996 * 109.45977 * 301.35593 * 11 10 9 44 44 H 1.09000 * 109.47506 * 304.21758 * 14 12 11 45 45 H 1.09005 * 109.47334 * 64.22608 * 14 12 11 46 46 H 1.09002 * 109.46817 * 65.56446 * 16 15 14 47 47 H 1.09003 * 109.47201 * 185.56597 * 16 15 14 48 48 H 1.09000 * 109.46880 * 305.56344 * 16 15 14 49 49 H 1.08995 * 109.47306 * 290.00208 * 17 15 14 50 50 H 1.08997 * 109.46727 * 50.00550 * 17 15 14 51 51 H 0.96996 * 120.00106 * 359.97438 * 20 18 17 52 52 H 0.97002 * 119.99648 * 179.97438 * 24 23 21 53 53 H 1.08995 * 109.58678 * 246.19736 * 29 8 6 54 54 H 1.08996 * 109.59178 * 6.62674 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4442 0.1238 7 8 4.1792 0.4684 -0.2118 8 7 4.1769 2.5301 0.6075 9 6 3.4145 3.6759 1.1221 10 6 3.8914 4.9454 0.4099 11 6 5.4078 5.0765 0.5702 12 6 6.0967 3.8724 -0.0761 13 1 5.8265 3.8215 -1.1308 14 6 7.6137 4.0206 0.0559 15 7 8.2769 2.9174 -0.6519 16 6 8.2357 3.1244 -2.1057 17 6 9.6587 2.7463 -0.1835 18 6 10.2244 1.4670 -0.7440 19 8 9.5434 0.7662 -1.4626 20 7 11.4868 1.1008 -0.4460 21 6 12.0013 -0.0634 -0.9555 22 1 11.3952 -0.6869 -1.5960 23 6 13.3030 -0.4405 -0.6486 24 7 13.7959 -1.5567 -1.1366 25 14 14.3515 0.6382 0.4586 26 1 14.1631 0.2269 1.8730 27 1 15.7812 0.4884 0.0858 28 1 13.9441 2.0571 0.2974 29 6 5.6448 2.5882 0.6359 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 0.5519 2.0837 -1.4196 36 1 1.9577 3.1675 -1.2878 37 1 2.1078 1.6155 -2.1463 38 1 2.3526 3.5250 0.9280 39 1 3.5816 3.7739 2.1948 40 1 3.6415 4.8841 -0.6493 41 1 3.4022 5.8148 0.8493 42 1 5.7464 5.9921 0.0853 43 1 5.6591 5.1127 1.6302 44 1 7.9253 4.9704 -0.3788 45 1 7.8911 3.9949 1.1097 46 1 8.8283 4.0018 -2.3647 47 1 8.6446 2.2483 -2.6092 48 1 7.2038 3.2766 -2.4219 49 1 10.2632 3.5888 -0.5195 50 1 9.6703 2.7023 0.9055 51 1 12.0313 1.6610 0.1290 52 1 14.7048 -1.8198 -0.9227 53 1 5.9901 2.5995 1.6696 54 1 6.0549 1.7196 0.1208 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490754394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:53 Heat of formation + Delta-G solvation = -101.479667 kcal Electronic energy + Delta-G solvation = -30810.675786 eV Core-core repulsion = 26781.031701 eV Total energy + Delta-G solvation = -4029.644085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.46506 -40.51718 -39.11426 -37.48340 -36.45797 -35.93604 -34.07141 -33.75879 -32.38328 -30.67744 -29.57208 -27.88627 -26.98150 -26.47942 -25.56285 -24.26695 -22.68225 -22.12777 -21.26750 -20.88502 -20.15869 -19.56498 -18.31142 -17.77961 -17.13709 -16.84380 -16.59517 -16.40841 -16.30017 -15.84291 -15.57994 -15.45015 -15.12641 -15.05869 -14.89134 -14.51871 -14.35030 -14.11646 -14.08341 -14.01545 -13.61661 -13.45516 -13.24013 -13.04791 -13.01297 -12.83257 -12.65461 -12.56547 -12.51149 -12.45134 -12.41697 -11.99074 -11.92666 -11.84307 -11.68687 -11.59445 -11.48867 -11.45589 -11.36184 -10.61053 -10.35858 -10.24391 -9.59694 -9.14767 -8.42066 -6.03056 1.28048 1.34840 1.43367 1.63726 1.96350 2.06140 2.22294 2.62979 3.13425 3.24447 3.51032 3.78953 3.79753 3.87374 3.98210 4.02116 4.11843 4.13934 4.22651 4.33407 4.34993 4.41255 4.46687 4.48937 4.51524 4.58027 4.59700 4.67454 4.70706 4.73072 4.77152 4.82634 4.89265 4.94790 4.97980 5.02578 5.09474 5.12689 5.16429 5.19325 5.23518 5.33799 5.36124 5.46860 5.51022 5.53276 5.63091 5.90482 6.02845 6.23843 6.48239 6.59822 6.88474 7.23760 7.39529 7.98909 8.76137 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.002439 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.716059 B =11477.374008 C =12662.673901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.101 4.101 4 H 0.125 0.875 5 C -0.138 4.138 6 C 0.501 3.499 7 O -0.598 6.598 8 N -0.612 5.612 9 C 0.096 3.904 10 C -0.129 4.129 11 C -0.109 4.109 12 C -0.084 4.084 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.546 5.546 16 C 0.032 3.968 17 C 0.057 3.943 18 C 0.448 3.552 19 O -0.608 6.608 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.050 0.950 23 C -0.019 4.019 24 N -0.937 5.937 25 Si 0.969 3.031 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.230 1.230 29 C 0.125 3.875 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.045 0.955 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.121 0.879 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.068 0.932 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.908 23.193 9.760 36.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.143 0.857 5 C -0.196 4.196 6 C 0.291 3.709 7 O -0.478 6.478 8 N -0.344 5.344 9 C -0.026 4.026 10 C -0.167 4.167 11 C -0.147 4.147 12 C -0.104 4.104 13 H 0.073 0.927 14 C -0.065 4.065 15 N -0.270 5.270 16 C -0.116 4.116 17 C -0.074 4.074 18 C 0.236 3.764 19 O -0.492 6.492 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.068 0.932 23 C -0.217 4.217 24 N -0.578 5.578 25 Si 0.788 3.212 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.153 1.153 29 C 0.002 3.998 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.225 0.775 52 H 0.088 0.912 53 H 0.086 0.914 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.135 21.651 9.188 35.160 hybrid contribution 1.887 -0.160 -0.255 1.911 sum -24.248 21.491 8.933 33.610 Atomic orbital electron populations 1.21791 0.92690 1.02465 1.03201 1.21368 0.97655 0.94468 1.01370 1.21421 0.88966 0.99330 1.02514 0.85733 1.21799 1.03492 1.00346 0.93925 1.21590 0.91877 0.81767 0.75697 1.90741 1.69743 1.35773 1.51583 1.48352 1.07012 1.17605 1.61406 1.22177 0.96938 0.84374 0.99063 1.21910 0.95817 0.97771 1.01172 1.21550 0.95111 0.96351 1.01675 1.21490 0.94350 0.95021 0.99527 0.92680 1.22275 0.93282 0.91403 0.99582 1.61424 1.15288 1.44794 1.05486 1.22341 1.01293 0.99825 0.88121 1.21858 0.89973 0.93650 1.01948 1.21044 0.81636 0.89559 0.84136 1.90542 1.60037 1.56969 1.41644 1.42030 1.13088 1.21659 1.46753 1.18978 0.98234 0.99368 1.29097 0.93178 1.26176 0.97806 0.98222 0.99477 1.69823 1.17397 1.24542 1.46029 0.85316 0.77755 0.79606 0.78503 1.18110 1.19899 1.15289 1.21505 0.79234 0.98860 1.00210 0.92532 0.91144 0.90940 0.93385 0.93768 0.88463 0.90812 0.94558 0.87454 0.89773 0.92149 0.87510 0.90186 0.90269 0.92227 0.89012 0.94533 0.93610 0.91406 0.90143 0.86119 0.77473 0.91160 0.91382 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.67 71.98 0.70 -1.02 16 2 C -0.11 -2.18 4.82 30.59 0.15 -2.03 16 3 C -0.10 -1.74 1.88 -11.54 -0.02 -1.76 16 4 H 0.12 1.25 6.35 -2.39 -0.02 1.23 16 5 C -0.14 -1.89 8.87 71.98 0.64 -1.25 16 6 C 0.50 13.79 6.82 87.66 0.60 14.38 16 7 O -0.60 -24.44 15.61 -3.05 -0.05 -24.49 16 8 N -0.61 -13.36 2.97 -818.06 -2.43 -15.79 16 9 C 0.10 1.00 6.14 86.36 0.53 1.53 16 10 C -0.13 -1.04 6.08 30.67 0.19 -0.85 16 11 C -0.11 -1.18 5.16 30.62 0.16 -1.02 16 12 C -0.08 -1.67 2.40 -10.57 -0.03 -1.69 16 13 H 0.05 1.32 6.71 -2.39 -0.02 1.31 16 14 C 0.06 1.29 4.40 86.30 0.38 1.66 16 15 N -0.55 -17.41 3.98 -927.04 -3.69 -21.10 16 16 C 0.03 1.08 9.03 127.69 1.15 2.23 16 17 C 0.06 1.84 5.43 85.55 0.46 2.30 16 18 C 0.45 21.56 7.52 87.66 0.66 22.21 16 19 O -0.61 -36.23 13.88 -3.08 -0.04 -36.27 16 20 N -0.59 -29.36 5.09 -306.98 -1.56 -30.93 16 21 C -0.33 -20.09 10.16 84.04 0.85 -19.23 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -1.08 5.50 84.93 0.47 -0.61 16 24 N -0.94 -58.54 13.96 21.66 0.30 -58.24 16 25 Si 0.97 40.01 27.74 68.60 1.90 41.91 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.23 -7.92 6.52 99.48 0.65 -7.28 16 29 C 0.12 3.28 5.54 86.51 0.48 3.76 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.67 6.51 -2.39 -0.02 0.65 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.04 1.11 8.04 -2.38 -0.02 1.10 16 35 H 0.10 0.81 6.44 -2.39 -0.02 0.80 16 36 H 0.07 0.79 7.69 -2.39 -0.02 0.78 16 37 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.65 5.11 -2.39 -0.01 0.64 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 1.01 8.00 -2.39 -0.02 0.99 16 45 H 0.09 1.58 7.74 -2.38 -0.02 1.56 16 46 H 0.04 1.03 8.13 -2.39 -0.02 1.01 16 47 H 0.05 2.00 5.91 -2.39 -0.01 1.99 16 48 H 0.07 2.08 6.65 -2.39 -0.02 2.06 16 49 H 0.08 2.13 8.11 -2.39 -0.02 2.11 16 50 H 0.12 3.16 7.83 -2.39 -0.02 3.15 16 51 H 0.39 15.83 5.76 -92.71 -0.53 15.29 16 52 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 53 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 54 H 0.05 1.98 6.81 -2.39 -0.02 1.96 16 Total: -1.00 -92.59 412.29 2.09 -90.50 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.29 Total: 35.79 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 7.36 Total: 18.62 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -7.38 Total: -126.05 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -0.09 Total: -60.76 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.90 Total: 41.91 kcal Total: -92.59 2.09 -90.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490754394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.979 kcal (2) G-P(sol) polarization free energy of solvation -92.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds